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Csor.00g103060 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTAACAGTTTAAGGTGTTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATCCGAATCGTTCATTTGAACGGCCACGTTGAAGAAATTGCCCATCCCATCACCGCCGGCGAGGTTCTAAAAGCGAACCCAAATCATGTTCTTACTAAGCCTTCTTCACAAGGGGTTGTTCGTCGGATTCTGATTCTCTCGCCGGAATCTGAGCTCAAAAGGGGCACTATTTATTTCGTGATTCCGGCGACTTCTCTGCCGGAGAAGAAAAGAAACGCCGGAAGCAGCCTCAAAACTCCGTCTTCAAAGGCCAAAAACTGTACCGCCACCGCAGACAGTGATTCTTACCTCTCCGATGTTGTATCCGACAAGAAACCGTCACGGCGGGACCGCCGCGGTGCCCGGGTGGTCGTATGGCGGCCCCGTTTGGAGAGCATTTCTGAAGACTAA ATGGGTAACAGTTTAAGGTGTTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATCCGAATCGTTCATTTGAACGGCCACGTTGAAGAAATTGCCCATCCCATCACCGCCGGCGAGGTTCTAAAAGCGAACCCAAATCATGTTCTTACTAAGCCTTCTTCACAAGGGGTTGTTCGTCGGATTCTGATTCTCTCGCCGGAATCTGAGCTCAAAAGGGGCACTATTTATTTCGTGATTCCGGCGACTTCTCTGCCGGAGAAGAAAAGAAACGCCGGAAGCAGCCTCAAAACTCCGTCTTCAAAGGCCAAAAACTGTACCGCCACCGCAGACAGTGATTCTTACCTCTCCGATGTTGTATCCGACAAGAAACCGTCACGGCGGGACCGCCGCGGTGCCCGGGTGGTCGTATGGCGGCCCCGTTTGGAGAGCATTTCTGAAGACTAA ATGGGTAACAGTTTAAGGTGTTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATCCGAATCGTTCATTTGAACGGCCACGTTGAAGAAATTGCCCATCCCATCACCGCCGGCGAGGTTCTAAAAGCGAACCCAAATCATGTTCTTACTAAGCCTTCTTCACAAGGGGTTGTTCGTCGGATTCTGATTCTCTCGCCGGAATCTGAGCTCAAAAGGGGCACTATTTATTTCGTGATTCCGGCGACTTCTCTGCCGGAGAAGAAAAGAAACGCCGGAAGCAGCCTCAAAACTCCGTCTTCAAAGGCCAAAAACTGTACCGCCACCGCAGACAGTGATTCTTACCTCTCCGATGTTGTATCCGACAAGAAACCGTCACGGCGGGACCGCCGCGGTGCCCGGGTGGTCGTATGGCGGCCCCGTTTGGAGAGCATTTCTGAAGACTAA MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVVRRILILSPESELKRGTIYFVIPATSLPEKKRNAGSSLKTPSSKAKNCTATADSDSYLSDVVSDKKPSRRDRRGARVVVWRPRLESISED Homology
BLAST of Csor.00g103060 vs. NCBI nr
Match: KAG6570631.1 (hypothetical protein SDJN03_29546, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 295 bits (754), Expect = 1.63e-100 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
BLAST of Csor.00g103060 vs. NCBI nr
Match: XP_023512271.1 (uncharacterized protein LOC111777063 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 293 bits (750), Expect = 6.66e-100 Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0
BLAST of Csor.00g103060 vs. NCBI nr
Match: XP_022944509.1 (uncharacterized protein LOC111448946 [Cucurbita moschata]) HSP 1 Score: 290 bits (743), Expect = 7.78e-99 Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0
BLAST of Csor.00g103060 vs. NCBI nr
Match: XP_023512270.1 (uncharacterized protein LOC111777061 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 268 bits (685), Expect = 4.59e-90 Identity = 136/149 (91.28%), Postives = 140/149 (93.96%), Query Frame = 0
BLAST of Csor.00g103060 vs. NCBI nr
Match: XP_038902054.1 (uncharacterized protein LOC120088703 [Benincasa hispida]) HSP 1 Score: 267 bits (683), Expect = 1.30e-89 Identity = 135/154 (87.66%), Postives = 144/154 (93.51%), Query Frame = 0
BLAST of Csor.00g103060 vs. ExPASy TrEMBL
Match: A0A6J1FWT9 (uncharacterized protein LOC111448946 OS=Cucurbita moschata OX=3662 GN=LOC111448946 PE=4 SV=1) HSP 1 Score: 290 bits (743), Expect = 3.77e-99 Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0
BLAST of Csor.00g103060 vs. ExPASy TrEMBL
Match: A0A0A0KBY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G217470 PE=4 SV=1) HSP 1 Score: 266 bits (680), Expect = 1.81e-89 Identity = 133/154 (86.36%), Postives = 144/154 (93.51%), Query Frame = 0
BLAST of Csor.00g103060 vs. ExPASy TrEMBL
Match: A0A6J1FW13 (uncharacterized protein LOC111448640 OS=Cucurbita moschata OX=3662 GN=LOC111448640 PE=4 SV=1) HSP 1 Score: 264 bits (674), Expect = 1.06e-88 Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 0
BLAST of Csor.00g103060 vs. ExPASy TrEMBL
Match: A0A5A7UMR0 (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold55219G00010 PE=4 SV=1) HSP 1 Score: 263 bits (671), Expect = 4.55e-88 Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 0
BLAST of Csor.00g103060 vs. ExPASy TrEMBL
Match: A0A1S3CK32 (uncharacterized protein LOC103501874 OS=Cucumis melo OX=3656 GN=LOC103501874 PE=4 SV=1) HSP 1 Score: 263 bits (671), Expect = 4.55e-88 Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 0
BLAST of Csor.00g103060 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 181.4 bits (459), Expect = 5.3e-46 Identity = 102/167 (61.08%), Postives = 118/167 (70.66%), Query Frame = 0
BLAST of Csor.00g103060 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 174.9 bits (442), Expect = 4.9e-44 Identity = 98/175 (56.00%), Postives = 118/175 (67.43%), Query Frame = 0
BLAST of Csor.00g103060 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 135.6 bits (340), Expect = 3.3e-32 Identity = 83/188 (44.15%), Postives = 113/188 (60.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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