Csor.00g102940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g102940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 1714778 .. 1715071 (+)
RNA-Seq Expression	Csor.00g102940
Synteny	Csor.00g102940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTTAACTCTTCATGCAGCTCTCTTTGACATATCTAAAATCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAACCGGTTTTAG

mRNA sequence

ATGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTTAACTCTTCATGCAGCTCTCTTTGACATATCTAAAATCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAACCGGTTTTAG

Coding sequence (CDS)

ATGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTTAACTCTTCATGCAGCTCTCTTTGACATATCTAAAATCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAAAACCGCGGAGAGCTCAACTCTTCATGCAGCTCTCTTTGACATATCTAACCGGTTTTAG

Protein sequence

MESSTLHAALFDISKTAESLTLHAALFDISKIAESSTLHAALFDISKTAESSTLHAALFDISKTAESSTLHAALFDISKTAESSTLHAALFDISNRF

Homology

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BLAST of Csor.00g102940 vs. NCBI nr
Match: KAG6570643.1 (hypothetical protein SDJN03_29558, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (441), Expect = 1.93e-54
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MESSTLHAALFDISKTAESLTLHAALFDISKIAESSTLHAALFDISKTAESSTLHAALFD 60
          MESSTLHAALFDISKTAESLTLHAALFDISKIAESSTLHAALFDISKTAESSTLHAALFD
Sbjct: 1  MESSTLHAALFDISKTAESLTLHAALFDISKIAESSTLHAALFDISKTAESSTLHAALFD 60

Query: 61 ISKTAESSTLHAALFDISKTAESSTLHAALFDISNRF 97
          ISKTAESSTLHAALFDISKTAESSTLHAALFDISNRF
Sbjct: 61 ISKTAESSTLHAALFDISKTAESSTLHAALFDISNRF 97

The following BLAST results are available for this feature:

BLAST of Csor.00g102940 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g102940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570643.1	1.93e-54	100.00	hypothetical protein SDJN03_29558, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g102940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g102940 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g102940.m01	Csor.00g102940.m01	mRNA