Csor.00g102720 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g102720
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 1817983 .. 1818339 (-)
RNA-Seq Expression	Csor.00g102720
Synteny	Csor.00g102720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCGCCGCCGCCGCCGCCGCCGCCGTCGTCGTCGTCTTCAGTCTCTCTTGGCAAAGAGACCACCGAACCCGCCGTTCTTTTTCGGCGGGACTTGGACGGAATTCTTCCGGCCGCCACTGACGGTGCCGCTGTTACTGTCCTTGCCCTCGACCTTTTGAAGAACAGGGTCGGTTTCGAGAAGCTGATCCCTCTCCAAGCTTCCGATGATCCAATCAAGAAGGCCCTTTTCCTTCTTGCTTTCGCCGGCGCCCTTCGCCGCCGTGGCTGCGAACACGCGTCCGGCAGCCGGAGAGAATGCGATCGGAAGAGAAGCCATATATATATATTTTTCTTTTTGCCTTTTGTTTTCTAG

mRNA sequence

ATGGCATCGCCGCCGCCGCCGCCGCCGCCGTCGTCGTCGTCTTCAGTCTCTCTTGGCAAAGAGACCACCGAACCCGCCGTTCTTTTTCGGCGGGACTTGGACGGAATTCTTCCGGCCGCCACTGACGGTGCCGCTGTTACTGTCCTTGCCCTCGACCTTTTGAAGAACAGGGTCGGTTTCGAGAAGCTGATCCCTCTCCAAGCTTCCGATGATCCAATCAAGAAGGCCCTTTTCCTTCTTGCTTTCGCCGGCGCCCTTCGCCGCCGTGGCTGCGAACACGCGTCCGGCAGCCGGAGAGAATGCGATCGGAAGAGAAGCCATATATATATATTTTTCTTTTTGCCTTTTGTTTTCTAG

Coding sequence (CDS)

ATGGCATCGCCGCCGCCGCCGCCGCCGCCGTCGTCGTCGTCTTCAGTCTCTCTTGGCAAAGAGACCACCGAACCCGCCGTTCTTTTTCGGCGGGACTTGGACGGAATTCTTCCGGCCGCCACTGACGGTGCCGCTGTTACTGTCCTTGCCCTCGACCTTTTGAAGAACAGGGTCGGTTTCGAGAAGCTGATCCCTCTCCAAGCTTCCGATGATCCAATCAAGAAGGCCCTTTTCCTTCTTGCTTTCGCCGGCGCCCTTCGCCGCCGTGGCTGCGAACACGCGTCCGGCAGCCGGAGAGAATGCGATCGGAAGAGAAGCCATATATATATATTTTTCTTTTTGCCTTTTGTTTTCTAG

Protein sequence

MASPPPPPPPSSSSSVSLGKETTEPAVLFRRDLDGILPAATDGAAVTVLALDLLKNRVGFEKLIPLQASDDPIKKALFLLAFAGALRRRGCEHASGSRRECDRKRSHIYIFFFLPFVF

Homology

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BLAST of Csor.00g102720 vs. NCBI nr
Match: KAG6570665.1 (hypothetical protein SDJN03_29580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (583), Expect = 1.95e-75
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASPPPPPPPSSSSSVSLGKETTEPAVLFRRDLDGILPAATDGAAVTVLALDLLKNRVGF 60
           MASPPPPPPPSSSSSVSLGKETTEPAVLFRRDLDGILPAATDGAAVTVLALDLLKNRVGF
Sbjct: 1   MASPPPPPPPSSSSSVSLGKETTEPAVLFRRDLDGILPAATDGAAVTVLALDLLKNRVGF 60

Query: 61  EKLIPLQASDDPIKKALFLLAFAGALRRRGCEHASGSRRECDRKRSHIYIFFFLPFVF 118
           EKLIPLQASDDPIKKALFLLAFAGALRRRGCEHASGSRRECDRKRSHIYIFFFLPFVF
Sbjct: 61  EKLIPLQASDDPIKKALFLLAFAGALRRRGCEHASGSRRECDRKRSHIYIFFFLPFVF 118

The following BLAST results are available for this feature:

BLAST of Csor.00g102720 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g102720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570665.1	1.95e-75	100.00	hypothetical protein SDJN03_29580, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g102720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g102720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g102720.m01	Csor.00g102720.m01	mRNA