Csor.00g102710 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g102710
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionJosephin-like protein
LocationCsor_Chr20: 1819309 .. 1819635 (-)
RNA-Seq ExpressionCsor.00g102710
SyntenyCsor.00g102710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACGGCAACAATGGAGCAGAGAATTGAGAAAAGGAACATGTCGAGCAACGCAACCAGGCGAAGCACAGGGTCGTTTAGAAAGTTGAGATTTAAGTCGCTGAAAGGCCTGCAATTCTCTCCGCTGAGCTTTTTGAAGCATCTGGCCAATAAAGTGACCCGAGCTTGGCATTTGATGGCCATGAAGAGAAGACCCCACCATGAGCAACAACCTGTTCCGGCCATGCCTGTCGCCACCTCGAAGCCACTGCCGGTGTCCGCCGTCGACTCACATAGAACAGAGGCTGTGGAGGACTGCATCAAGTACATCAACTCTTCCTCGTAG

mRNA sequence

ATGACGACGGCAACAATGGAGCAGAGAATTGAGAAAAGGAACATGTCGAGCAACGCAACCAGGCGAAGCACAGGGTCGTTTAGAAAGTTGAGATTTAAGTCGCTGAAAGGCCTGCAATTCTCTCCGCTGAGCTTTTTGAAGCATCTGGCCAATAAAGTGACCCGAGCTTGGCATTTGATGGCCATGAAGAGAAGACCCCACCATGAGCAACAACCTGTTCCGGCCATGCCTGTCGCCACCTCGAAGCCACTGCCGGTGTCCGCCGTCGACTCACATAGAACAGAGGCTGTGGAGGACTGCATCAAGTACATCAACTCTTCCTCGTAG

Coding sequence (CDS)

ATGACGACGGCAACAATGGAGCAGAGAATTGAGAAAAGGAACATGTCGAGCAACGCAACCAGGCGAAGCACAGGGTCGTTTAGAAAGTTGAGATTTAAGTCGCTGAAAGGCCTGCAATTCTCTCCGCTGAGCTTTTTGAAGCATCTGGCCAATAAAGTGACCCGAGCTTGGCATTTGATGGCCATGAAGAGAAGACCCCACCATGAGCAACAACCTGTTCCGGCCATGCCTGTCGCCACCTCGAAGCCACTGCCGGTGTCCGCCGTCGACTCACATAGAACAGAGGCTGTGGAGGACTGCATCAAGTACATCAACTCTTCCTCGTAG

Protein sequence

MTTATMEQRIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHHEQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS
Homology
BLAST of Csor.00g102710 vs. NCBI nr
Match: KAG6570666.1 (hypothetical protein SDJN03_29581, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210 bits (535), Expect = 1.96e-68
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MTTATMEQRIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLM 60
           MTTATMEQRIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLM
Sbjct: 1   MTTATMEQRIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLM 60

Query: 61  AMKRRPHHEQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
           AMKRRPHHEQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS
Sbjct: 61  AMKRRPHHEQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108

BLAST of Csor.00g102710 vs. NCBI nr
Match: KAG7010513.1 (Josephin-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196 bits (499), Expect = 2.07e-60
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 9   RIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHH 68
           RIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHH
Sbjct: 195 RIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHH 254

Query: 69  EQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
           EQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS
Sbjct: 255 EQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 294

BLAST of Csor.00g102710 vs. NCBI nr
Match: XP_023512266.1 (uncharacterized protein LOC111777056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (499), Expect = 1.51e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 9   RIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHH 68
           RIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHH
Sbjct: 266 RIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHH 325

Query: 69  EQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
           EQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS
Sbjct: 326 EQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 365

BLAST of Csor.00g102710 vs. NCBI nr
Match: KAG6605423.1 (hypothetical protein SDJN03_02740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144 bits (363), Expect = 2.66e-42
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 5   TMEQRIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKR 64
           TMEQ       SSN T ++ GSF+K RF+SLKGLQFSPLSFLKHLA+KVTRAWHLM MKR
Sbjct: 4   TMEQ-------SSNRTEQTRGSFQKCRFRSLKGLQFSPLSFLKHLADKVTRAWHLMGMKR 63

Query: 65  RPHHEQQPVPAM-PVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
           +P HEQ   PA+  +A SKPLPVSA+DSHRTEAVEDCIKYINSSS
Sbjct: 64  KPRHEQTAAPAVVSIANSKPLPVSAIDSHRTEAVEDCIKYINSSS 101

BLAST of Csor.00g102710 vs. NCBI nr
Match: KAG7035372.1 (hypothetical protein SDJN02_02168, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144 bits (363), Expect = 5.39e-42
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 5   TMEQRIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKR 64
           TMEQ       SSN T ++ GSF+K RF+SLKGLQFSPLSFLKHLA+KVTRAWHLM MKR
Sbjct: 27  TMEQ-------SSNRTEQTRGSFQKCRFRSLKGLQFSPLSFLKHLADKVTRAWHLMGMKR 86

Query: 65  RPHHEQQPVPAM-PVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
           +P HEQ   PA+  +A SKPLPVSA+DSHRTEAVEDCIKYINSSS
Sbjct: 87  KPRHEQTAAPAVVSIANSKPLPVSAIDSHRTEAVEDCIKYINSSS 124

BLAST of Csor.00g102710 vs. ExPASy TrEMBL
Match: A0A5A7V4L5 (Josephin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00520 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 5.47e-37
Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 0

Query: 1   MTTATMEQRIEKRNMSSNATRRSTGSFRKLRF---KSLKGLQFSPLSFLKHLANKVTRAW 60
           MTT T+EQ+++K N SSN  R    +F+K RF   KSLKGLQFSPL FLKHLA+KVTRA 
Sbjct: 1   MTTTTLEQKVKKPNSSSNNNRTGRSTFQKCRFRSPKSLKGLQFSPLCFLKHLADKVTRAL 60

Query: 61  HLMAMKRRPHHEQQPVPAMPVATSKPLPVSA-VDSHRTEAVEDCIKYINSSS 108
           H MAMKR    ++QPVPA+P+A+SK + V A VDSHRTEAVEDCIKYIN+S+
Sbjct: 61  HFMAMKRNRPLQKQPVPAVPLASSKAIQVPATVDSHRTEAVEDCIKYINAST 112

BLAST of Csor.00g102710 vs. ExPASy TrEMBL
Match: A0A0A0KE45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187920 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 7.49e-30
Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 0

Query: 3   TATMEQRIEKRNMSSNATRRSTGSFRKLRF---KSLKGLQFSPLSFLKHLANKVTRAWHL 62
           T T+EQ+++K N SSN  R    +F+K RF   KSLK LQFSPL FLKHLA+KVTRA H 
Sbjct: 2   TTTLEQKVKKPNSSSN-NRTGRSTFQKCRFPSPKSLKRLQFSPLCFLKHLADKVTRALHF 61

Query: 63  MAMKRRPHHEQQPVPA-MPVATSKPLPVSA-VDSHRTEAVEDCIKYINSSS 108
           MAMKR    ++Q VPA +PVA+SK + V A +DSHRTEAVEDCIKYIN+S+
Sbjct: 62  MAMKRNRPLQKQHVPAAVPVASSKAVQVPATIDSHRTEAVEDCIKYINAST 111

BLAST of Csor.00g102710 vs. ExPASy TrEMBL
Match: A0A5J5QPN0 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G113700v1 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.80e-12
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 4   ATMEQRIEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMK 63
           AT+   I K N S+ A  +     R   F   K  +FSP+ FLKHL  K+ R  H+++MK
Sbjct: 13  ATVSTIIHKSNTSA-AGNKGVPRSRSYHFMRCKTSKFSPVRFLKHLGGKLARGLHVVSMK 72

Query: 64  RRPHHEQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
            R    Q P  +     SKP  V+ VDSHRT AVEDCI++INSS+
Sbjct: 73  IR----QSPKVSSSSGRSKPF-VTPVDSHRTAAVEDCIEFINSSA 111

BLAST of Csor.00g102710 vs. ExPASy TrEMBL
Match: A0A6A1VD78 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G009091 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.83e-12
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 0

Query: 13  RNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHHEQQP 72
           RN S   +  S  + +  RFK  KG +  P+ FLKH+A+K+ RA H  +++R      Q 
Sbjct: 12  RNYSKRVSANSGFARQYCRFKLPKGPEL-PIRFLKHIADKIARALHSASLRR-----SQS 71

Query: 73  VPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
                  +SKP+    VDSHRTEA+EDCI+++NSSS
Sbjct: 72  AKDSSFGSSKPIVAMTVDSHRTEAIEDCIEFLNSSS 101

BLAST of Csor.00g102710 vs. ExPASy TrEMBL
Match: A0A6A3B894 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110290pilonHSYRG00003 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.40e-12
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 10  IEKRNMSSNATRRSTGSFRKLRFKSLKGLQFSPLSFLKHLANKVTRAWHLMAMKRRPHHE 69
           I+K N  +   +  +GS+    F   K L+FSP+ FL+HL  KV++  H ++MK RP H+
Sbjct: 18  IQKSNTGAAGNKGISGSW-SCGFMLRKRLKFSPVRFLRHLGGKVSKVLHEVSMKIRPSHK 77

Query: 70  QQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYINSSS 108
                +     SKP  V+ VD+HRT A+EDCI++INSS+
Sbjct: 78  V----SSSSGRSKPF-VTTVDAHRTAAIEDCIEFINSSA 110

BLAST of Csor.00g102710 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related )

HSP 1 Score: 44.7 bits (104), Expect = 5.6e-05
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 46  LKHLANKVTRAWHLMAMKRRPHHEQQPVPAMPVATSKPLPVSAVDSHRTEAVEDCIKYIN 105
           +KHL  K  +   L+ M+++       V +    +  P+     DSHR+EA+EDCI++IN
Sbjct: 57  IKHLGCKFAKGLRLVVMRKKKRSPPSKVSSFSGRSQPPIIPINNDSHRSEAIEDCIQFIN 116

Query: 106 SSS 109
           SSS
Sbjct: 117 SSS 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6570666.11.96e-68100.00hypothetical protein SDJN03_29581, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010513.12.07e-60100.00Josephin-like protein [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023512266.11.51e-59100.00uncharacterized protein LOC111777056 [Cucurbita pepo subsp. pepo][more]
KAG6605423.12.66e-4273.33hypothetical protein SDJN03_02740, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035372.15.39e-4273.33hypothetical protein SDJN02_02168, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A5A7V4L55.47e-3765.18Josephin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold57... [more]
A0A0A0KE457.49e-3062.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187920 PE=4 SV=1[more]
A0A5J5QPN03.80e-1243.81Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G113700v1 PE... [more]
A0A6A1VD785.83e-1241.67Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G009091 PE=4 SV=1[more]
A0A6A3B8947.40e-1241.41Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110290pilon... [more]
Match NameE-valueIdentityDescription
AT1G07300.15.6e-0536.51josephin protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..91
NoneNo IPR availablePANTHERPTHR34355JOSEPHIN-LIKE PROTEINcoord: 5..108
NoneNo IPR availablePANTHERPTHR34355:SF7JOSEPHIN PROTEIN-LIKE PROTEINcoord: 5..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g102710.m01Csor.00g102710.m01mRNA