Csor.00g101790 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g101790
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description40S ribosomal protein S23
LocationCsor_Chr20: 2304436 .. 2307427 (-)
RNA-Seq ExpressionCsor.00g101790
SyntenyCsor.00g101790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCTCCCGCTGTTCTTGGATCACCTCTACAAGTCTGGTACCCATAGTAAATCCCACATCGGTTGGAGAGGGAAACGAAATATTGCTTATAAGGGTGTGAAAACCTCTCACTAGCAGATGTGTTTTAAAATCGTGAGGCTAACGGTGATACGTAACGGACTAAAGCAGACAATATTTGCTAGCGGTGGACTTGGGCCGTTACATTTGGTATTTGACTAACTATCAGTTTAAATTATCTCATTATATAGACAGAGCATCTGCATCTGCTACTCTCCTCATGGAGAATCTGCCATCTTTCCTTATTTTTCAGGCCTTCTATCTGTTGAGCCTCTTGGAGTGCATGCTGTGCTAGGGGTTGTATTCCCTAGAAGCCTCCAAGTATTCCCCGTGGTTGAGAAAAGACTTTCCAAATCTTCTTCGTATTTGATGCTGGATTTCGAGATTTAGTTGTTGCTTCTACGCTCTCGAGAGACCTCTCTCAGAATGTATCGACAAAGCTAGAGGAGCTACTGATTATCCAGATTTTGATTCGTCACTCTAAAGATTACGTTGAAGTCGAAAAGAAATTGTTGCATTATCGATGCTTATCAGCGATATTCCTTGGCAACTTGAACTAGATTTTAATGATAGTGAATTTGTGACATCCAAGTAAATGAGAAGTACACGAATGAATCGAGACTATATCTTATAACAAAAGTGCACCTTCCTTTTTTTGGTGGCTCAATCTTTGAATTTTGTTAAGAAGCATATAACTTAACATGTTAAAAAGATTTATATTGGTATGTAGGAATTGATCCGTAAATAATTAAGGTCTCGAATTTTTTTCAAAACGGGAACCTCTCCAACAAGGTATGTTTTGCAATTCCATTGCCTCTAATTCCTATCTCGGCTTCAACTTAGTTTAATTAGTAGCGGGTTTTCCACCAAATTCAGAGTTTTTTCCCATTATCATGATTCACACTCGGGGAAAAGGAATTCAAAAAAGATAACGAATAACATATCTCTCATCCATAAGCTTATTGTGTCGATGTTTGCCCTTTAGAGAAACACGAAGGGGCTACGAGCTGACCTAAAAGAATTCTAGCTAGTTCGTGATGACACTTTTCATTCAGAAATTCATTCTAACGAGTAGGTTTTGGAGCTTTTGACAGCAAGTCGAAAGTAAGAAGCCCTCTCCTACTATTTTTCACTATGGGTTACCAAGAAAAAACAGTGTTAAACAGCCCTCGGTTAATCTTGAATAATCTTCTAATCAAATTTAGGGAAAAATCAATTTCTTCCGTTATTTAAATAAAAAAAATTATGAAGATTAAATTGACAATAACATATAACATGGGAAACTAATTTTATTTATTAATTTGCAATTTACAACAAGAAATCCTCAAAAAAAAAGAAAAAAGAAATTTAACTAGGCGATGCCGACGTGGCAAATTAGTTGTATTTCAGCGAGGATTGGCTTAGCGAAGAACCTCAGTATAAAAGCTACGCAACAAGCCTAGGGTTTCTCATTCACAGACGGTGCGGCGGCCTCATCAAACCAGCATCGTCTCTACCGGCGTCGGAACTTCACTACCTTACTTGAAGATCCTCTTCTCGCACTCACCATGGGGTATGTCCTCTTTCCATCCTATTTTGGTGTTCCCGAATTGTTTATCGAGATGAATGTTCTAGGGAAAGAAATAGACAATTTAGTCGAGATTTGCTTGGCTTTACTGGACCATATCCATTTAGAAGATCGAAAAATAGAAGTTACTCTGTTGACGGGAGTCGCCGATTTATTTCCTTATTGTTTCGTTACTATCGTTCTACATGTGGGAAGAACAGTAGTTGTATCTGTCTTAAGGTTGTAGGATACGACTGTGCGCCTGACTTTAATGTGAACAAGTTGGTGGCTATGGTTCTAGCTTAATTTAACGAACTTTTCCTCCATTTTGAACAATCGATGTCGTTTCTTTACCACTGGAAAGGTTGGTGTTGCTTGGTACAAGCATTCTTGATGGTATGAACATCGTTATGACTTCGATTCAACTGCTAAATGTTTTATTAGTTAATAGCCTTAAATCTAGAGGCAAAATTGACGAGGCTTTCAGGGAATTGGGAAAATGGTCTATGCTCTGTGCAAATCTGCAGCTGAATTCTCTTTGTTAAAGTAGTACTAATATCTTACAGGAAAACACGTGGAATGGGAGCGGGTCGCAAGCTGAAGTCCCACCGTCGAAGACAAAGGTGGGCTGACAAAGCGTACAAGAAATCCCATCTTGGAAATGAATGGAAGAAACCATTTGCCGGATCTTCCCATGCCAAAGGCATTGTTCTAGAAAAGATGTAAGATGATTTTATTGCTGCTGTTCTTTTCTGAGGCGTAATTAGCAAAATTCCATTTAATAAATAGTTTTCTGGTGCAATGTGCAGTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCGGCGTTTGTTCCGAACGATGGTTGCTTAAATTACATTGAAGAGAATGTAAGTATTTTGAGGGAAGCTTGGGATTTTCGTTACTATTATCCTCTACTTTTCAATAATATTTATTGGCATGAACAGGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACACGCTGTCGGTGATATTCCCGGAGTTAGATTTAAGGTGGTCAAGGTTTCAGGTGTATCTCTTCTTGCTCTTTTCAAGGAAAAGAAGGAGAAGCCAAGGTCTTAAGCTAAGGTAGATTATGTCTCCATTTTCTTCTTTTCTGGCCAGAGACAACTAATGAGACAACGAATCACGAGTTAAGTTAGATTATCGGGTCGGGTGATAGAAACTTTTGCACTGCAATTCTATTGTTGAGACTTGATTATCAGGCATGATTTTCTTTGCAATGAGAACAGCTTCTGTTATTGTGTTAATTTCAGGAAGTTTTGTCGTGGAATGATTCTGTTGATTCTATAG

mRNA sequence

ATGTTCCTCCCGCTGTTCTTGGATCACCTCTACAAGTCTGACGGTGCGGCGGCCTCATCAAACCAGCATCGTCTCTACCGGCGTCGGAACTTCACTACCTTACTTGAAGATCCTCTTCTCGCACTCACCATGGGGAAAACACGTGGAATGGGAGCGGGTCGCAAGCTGAAGTCCCACCGTCGAAGACAAAGGTGGGCTGACAAAGCGTACAAGAAATCCCATCTTGGAAATGAATGGAAGAAACCATTTGCCGGATCTTCCCATGCCAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCGGCGTTTGTTCCGAACGATGGTTGCTTAAATTACATTGAAGAGAATGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACACGCTGTCGGTGATATTCCCGGAGTTAGATTTAAGGTGGTCAAGGTTTCAGGTGTATCTCTTCTTGCTCTTTTCAAGGAAAAGAAGGAGAAGCCAAGGCATGATTTTCTTTGCAATGAGAACAGCTTCTGTTATTGTGTTAATTTCAGGAAGTTTTGTCGTGGAATGATTCTGTTGATTCTATAG

Coding sequence (CDS)

ATGTTCCTCCCGCTGTTCTTGGATCACCTCTACAAGTCTGACGGTGCGGCGGCCTCATCAAACCAGCATCGTCTCTACCGGCGTCGGAACTTCACTACCTTACTTGAAGATCCTCTTCTCGCACTCACCATGGGGAAAACACGTGGAATGGGAGCGGGTCGCAAGCTGAAGTCCCACCGTCGAAGACAAAGGTGGGCTGACAAAGCGTACAAGAAATCCCATCTTGGAAATGAATGGAAGAAACCATTTGCCGGATCTTCCCATGCCAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCGGCGTTTGTTCCGAACGATGGTTGCTTAAATTACATTGAAGAGAATGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACACGCTGTCGGTGATATTCCCGGAGTTAGATTTAAGGTGGTCAAGGTTTCAGGTGTATCTCTTCTTGCTCTTTTCAAGGAAAAGAAGGAGAAGCCAAGGCATGATTTTCTTTGCAATGAGAACAGCTTCTGTTATTGTGTTAATTTCAGGAAGTTTTGTCGTGGAATGATTCTGTTGATTCTATAG

Protein sequence

MFLPLFLDHLYKSDGAAASSNQHRLYRRRNFTTLLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRHDFLCNENSFCYCVNFRKFCRGMILLIL
Homology
[Close]
BLAST of Csor.00g101790 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.3e-74
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 103
           MGKTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 104 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 163
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 164 VVKVSGVSLLALFKEKKEKPR 185
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]
BLAST of Csor.00g101790 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-73
Identity = 137/141 (97.16%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 103
           MGKT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 104 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 163
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 164 VVKVSGVSLLALFKEKKEKPR 185
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]
BLAST of Csor.00g101790 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 4.6e-72
Identity = 136/141 (96.45%), Postives = 136/141 (96.45%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 103
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 104 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 163
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 164 VVKVSGVSLLALFKEKKEKPR 185
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]
BLAST of Csor.00g101790 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 2.1e-69
Identity = 133/141 (94.33%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 103
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 104 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 163
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 164 VVKVSGVSLLALFKEKKEKPR 185
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]
BLAST of Csor.00g101790 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.6e-62
Identity = 115/142 (80.99%), Postives = 126/142 (88.73%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 103
           MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 104 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 163
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 164 KVVKVSGVSLLALFKEKKEKPR 185
           KVVKV+ VSLLAL+K+KKE+PR
Sbjct: 121 KVVKVASVSLLALYKQKKERPR 142

[Close]
BLAST of Csor.00g101790 vs. NCBI nr
Match: KAG6570758.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433 bits (1113), Expect = 3.55e-153
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 

Query: 1   MFLPLFLDHLYKSDGAAASSNQHRLYRRRNFTTLLEDPLLALTMGKTRGMGAGRKLKSHR 60
           MFLPLFLDHLYKSDGAAASSNQHRLYRRRNFTTLLEDPLLALTMGKTRGMGAGRKLKSHR
Sbjct: 1   MFLPLFLDHLYKSDGAAASSNQHRLYRRRNFTTLLEDPLLALTMGKTRGMGAGRKLKSHR 60

Query: 61  RRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG 120
           RRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG
Sbjct: 61  RRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG 120

Query: 121 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 180
           KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK
Sbjct: 121 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 180

Query: 181 EKPRHDFLCNENSFCYCVNFRKFCRGMILLIL 212
           EKPRHDFLCNENSFCYCVNFRKFCRGMILLIL
Sbjct: 181 EKPRHDFLCNENSFCYCVNFRKFCRGMILLIL 212

[Close]
BLAST of Csor.00g101790 vs. NCBI nr
Match: KAF3946178.1 (hypothetical protein CMV_027526, partial [Castanea mollissima])

HSP 1 Score: 288 bits (736), Expect = 1.95e-96
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0 

Query: 32  TTLLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKG 91
           T +  +  L++TMGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKG
Sbjct: 12  TLVAVEQFLSVTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKG 71

Query: 92  IVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 151
           IVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG
Sbjct: 72  IVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 131

Query: 152 HAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           HAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 132 HAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 164

[Close]
BLAST of Csor.00g101790 vs. NCBI nr
Match: PIA25887.1 (hypothetical protein AQUCO_10500021v1, partial [Aquilegia coerulea])

HSP 1 Score: 285 bits (729), Expect = 4.07e-95
Identity = 147/163 (90.18%), Postives = 150/163 (92.02%), Query Frame = 0 

Query: 25  LYRRRNFTTLLEDP---LLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKK 84
           L R R+   LL D    +L   MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKK
Sbjct: 19  LLRLRSSCFLLPDSTNLILPSIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK 78

Query: 85  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 144
           PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE
Sbjct: 79  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 138

Query: 145 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 139 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 181

[Close]
BLAST of Csor.00g101790 vs. NCBI nr
Match: CBI32689.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 285 bits (729), Expect = 5.18e-95
Identity = 142/148 (95.95%), Postives = 146/148 (98.65%), Query Frame = 0 

Query: 37  DPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEK 96
           + LL++ MGKTRGMGAGRKLKSHRRRQRWADKAYKKS+LGNEWKKPFAGSSHAKGIVLEK
Sbjct: 41  EQLLSVAMGKTRGMGAGRKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEK 100

Query: 97  IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 156
           IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD
Sbjct: 101 IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 160

Query: 157 IPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           IPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 161 IPGVRFKVVKVSGVSLLALFKEKKEKPR 188

[Close]
BLAST of Csor.00g101790 vs. NCBI nr
Match: XP_004137806.1 (40S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protein S23 [Cucumis sativus] >XP_004149560.1 40S ribosomal protein S23 [Cucumis sativus] >XP_008442648.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463567.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463898.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_010244979.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_010253521.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_011077380.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094704.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094750.1 40S ribosomal protein S23 [Sesamum indicum] >XP_015871640.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_015874365.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_019159119.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_019199308.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_022146292.1 40S ribosomal protein S23 [Momordica charantia] >XP_022846964.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022860588.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022868249.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022893103.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022923344.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022944535.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022951215.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022985542.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_022990481.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023005893.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023512024.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_023538819.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_028112674.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_028118234.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_031111005.1 40S ribosomal protein S23 [Ipomoea triloba] >XP_038890679.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038900543.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038903484.1 40S ribosomal protein S23 [Benincasa hispida] >KAG6602334.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010604.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG8376519.1 hypothetical protein BUALT_Bualt09G0071800 [Buddleja alternifolia] >PIN05081.1 40S ribosomal protein S23 [Handroanthus impetiginosus] >CAA3000695.1 40S ribosomal S23 [Olea europaea subsp. europaea] >GFZ11112.1 ribosomal protein S12/S23 family protein [Actinidia rufa])

HSP 1 Score: 283 bits (724), Expect = 5.97e-95
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 103
           MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 104 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 163
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 164 VVKVSGVSLLALFKEKKEKPR 184
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]
BLAST of Csor.00g101790 vs. ExPASy TrEMBL
Match: A0A5B6Z065 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006978 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 1.77e-96
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0 

Query: 36  EDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLE 95
           ++P L+ TMGKTRGMGAGRKLKSHRRRQRWADKAYKKS+LGNEWKKPFAGSSHAKGIVLE
Sbjct: 24  QEPPLSATMGKTRGMGAGRKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLE 83

Query: 96  KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG 155
           KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG
Sbjct: 84  KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG 143

Query: 156 DIPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           DIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 144 DIPGVRFKVVKVSGVSLLALFKEKKEKPR 172

[Close]
BLAST of Csor.00g101790 vs. ExPASy TrEMBL
Match: A0A5B7CBP6 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_047868 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 2.17e-96
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0 

Query: 36  EDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLE 95
           ++P L+ TMGKTRGMGAGRKLKSHRRRQRWADKAYKKS+LGNEWKKPFAGSSHAKGIVLE
Sbjct: 30  QEPPLSATMGKTRGMGAGRKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLE 89

Query: 96  KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG 155
           KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG
Sbjct: 90  KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG 149

Query: 156 DIPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           DIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 150 DIPGVRFKVVKVSGVSLLALFKEKKEKPR 178

[Close]
BLAST of Csor.00g101790 vs. ExPASy TrEMBL
Match: M5X0T9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012246mg PE=3 SV=1)

HSP 1 Score: 285 bits (729), Expect = 1.72e-95
Identity = 143/161 (88.82%), Postives = 147/161 (91.30%), Query Frame = 0 

Query: 24  RLYRRRNFTTLLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPF 83
           RL     F   ++D  L+  MGKTRGMGA RKLK HRRRQRWADK+YKKSHLGNEWKKPF
Sbjct: 17  RLSALSTFAAEVQDSTLSAAMGKTRGMGAARKLKDHRRRQRWADKSYKKSHLGNEWKKPF 76

Query: 84  AGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 143
           AGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
Sbjct: 77  AGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL 136

Query: 144 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 137 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 177

[Close]
BLAST of Csor.00g101790 vs. ExPASy TrEMBL
Match: A0A2G5C510 (Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_10500021v1 PE=3 SV=1)

HSP 1 Score: 285 bits (729), Expect = 1.97e-95
Identity = 147/163 (90.18%), Postives = 150/163 (92.02%), Query Frame = 0 

Query: 25  LYRRRNFTTLLEDP---LLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKK 84
           L R R+   LL D    +L   MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKK
Sbjct: 19  LLRLRSSCFLLPDSTNLILPSIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK 78

Query: 85  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 144
           PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE
Sbjct: 79  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 138

Query: 145 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 139 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 181

[Close]
BLAST of Csor.00g101790 vs. ExPASy TrEMBL
Match: A0A7N0R9F0 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 2.04e-95
Identity = 150/178 (84.27%), Postives = 153/178 (85.96%), Query Frame = 0 

Query: 7   LDHLYKSDGAAASSNQHRLYRRRNFTTLLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWA 66
           LD   K   + +    HR  R  + T      L A  MGKTRGMGAGRKLKSHRRRQRWA
Sbjct: 48  LDLKLKRRNSESELPAHRRLRSASETLASSSALPA--MGKTRGMGAGRKLKSHRRRQRWA 107

Query: 67  DKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 126
           DKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF
Sbjct: 108 DKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 167

Query: 127 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 184
           VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 168 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 223

[Close]
BLAST of Csor.00g101790 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 272.3 bits (695), Expect = 3.2e-73
Identity = 136/141 (96.45%), Postives = 136/141 (96.45%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 103
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 104 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 163
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 164 VVKVSGVSLLALFKEKKEKPR 185
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]
BLAST of Csor.00g101790 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-70
Identity = 133/141 (94.33%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 44  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 103
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 104 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 163
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 164 VVKVSGVSLLALFKEKKEKPR 185
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]
BLAST of Csor.00g101790 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 77  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 136
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 137 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 167
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Csor.00g101790 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 77  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 136
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 137 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 167
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Csor.00g101790 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 77  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 136
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 137 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 167
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:
BLAST of Csor.00g101790 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462971.3e-7497.8740S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1[more]
Q9M5Z91.1e-7397.1640S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1[more]
P492014.6e-7296.4540S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2[more]
Q9SF352.1e-6994.3340S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2[more]
Q9GRJ35.6e-6280.9940S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1[more]
BLAST of Csor.00g101790 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570758.13.55e-153100.0040S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF3946178.11.95e-9693.46hypothetical protein CMV_027526, partial [Castanea mollissima][more]
PIA25887.14.07e-9590.18hypothetical protein AQUCO_10500021v1, partial [Aquilegia coerulea][more]
CBI32689.35.18e-9595.95unnamed protein product, partial [Vitis vinifera][more]
XP_004137806.15.97e-95100.0040S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protei... [more]
BLAST of Csor.00g101790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5B6Z0651.77e-9695.97Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006978... [more]
A0A5B7CBP62.17e-9695.97Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_047868... [more]
M5X0T91.72e-9588.82Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012246mg PE=3 SV=1[more]
A0A2G5C5101.97e-9590.18Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_1050... [more]
A0A7N0R9F02.04e-9584.27Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1[more]
BLAST of Csor.00g101790 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02960.13.2e-7396.45Ribosomal protein S12/S23 family protein [more]
AT3G09680.11.5e-7094.33Ribosomal protein S12/S23 family protein [more]
ATCG00065.15.8e-0636.26ribosomal protein S12A [more]
ATCG01230.15.8e-0636.26ribosomal protein S12B [more]
ATCG00905.15.8e-0636.26ribosomal protein S12C [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 49..184
e-value: 2.1E-52
score: 174.5
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 69..182
e-value: 6.9219E-80
score: 232.16
NoneNo IPR availableGENE3D2.40.50.140coord: 68..185
e-value: 2.7E-46
score: 157.9
NoneNo IPR availablePANTHERPTHR11652:SF59BNACNNG03140D PROTEINcoord: 34..184
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 74..184
e-value: 2.2E-49
score: 165.8
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 34..184
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 102..109
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 63..184

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g101790.m01Csor.00g101790.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome