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Csor.00g101620 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAGAGAAGCGGGAACTTCAAAACCAGCCCCCAAAAACAAGACCCACAACAACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAACAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCATGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGTAAGCCCTCAACACCCCGCCCCACCCCACACAGGCATTGCTCAAAATTAGGTCTTTTCTTGTTGGTGGAAGATGGATAGGCATTGTTTGTTTCTAAAGGTCTGTAAGCTTCTTAATTGGTTGCAGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTCCTATTCTCTATCCTGATATCATGCTCAATCTTCATTTTCATTTACCCTTCTTGTCTGGTTCTGATCTAAAAAGAAAGCTAGACCTGTGAATTATATCATTGTGTACTTCAACTGCACTATCATATGCCCATGGCAGGGCTTTACCTTTAATGAAATGTTTCAATATATGTTCCCCATGATTCAAGGGACCAGATTTAAGAATGGCTGGTCCTGTTTTTTCTGTATTCATGCTGCAAAATGAATAGCAGCATGATGGTCAGCTATTTAGTAGTGACAAGGAAGATATCGTGATCACTGTCATAGTTTAACATGGATTATGACCTTAGATTTAGGTTACTCCAATTACATGGTTGTTAAGGGACTTGAATTATATGAGCCTCTATCTGTCAAACTATTGCGTTGTGGAGAATTACTGATTTGTATTATCAGTGCATTGCTTTATGCTTTCAAAGAGCTAGATCCCCGATGAGTTCACATATATGAGGAGGAAGAATAAAAGCCAGTGGAAGGAAAGTTGTTGAATCTGATACTTGGGAAGGGCATAAGTTGGTTGGGGAGGGGTCTATAACTGTAACAACTCAAGTCCACCACTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGATTTCCTTCAAGGTTTTAAAACGCGTCTGTCAGGGAGGTTTACTCACCCTTATAAAGAATGGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCGCGTTCCCTTCTCCATTCGATGTGGGACCCCCCAATCCACCCCCTTTCGAGACCCAACGTCCTTGCTGGCACATTGCCTTGTGTCCACCTCCTTTGGGGCTCAGCCTTCTCGCTCACACATCGCCCGGTGTCTGGCTCTGATATCATTTGTAACCACCCAAGTCCACTACTAGCACATATTGTCCTCTTTGGGCTTTCCCTTTCAGGCTTCCCTTCAAGGTTTTAAAACGCATCTGCTAAGGAGAGGTTTCCATACCCTTATAAAAAATGGTACGTTCTCCTCTCCAACCGATGTGGGATCTCACGGTAATTGATATCAGCACTCCTTTTGGACAACGGTAAGGTAGGTGGTCTAGGGAACAGAAAGGGAGAATATTGAAGTACATATTTGGTAGACAAAAATGGGGAGGGATTGTGAGTCTAGTATGAAATTTCAATTTGGATGAGGAGAGAACAGGAAGACTCCTGGATCTCTTCCCTTTTGTTTTGTTCTGCTATCTATTCCTAGAAAGTGAATTCAAGTGTCTATCATCTGTCTAGGGGACGAAATTTTGATAAGCCTTTCGTTTTACTTATTGCTTCATATATCTACTATTGCTAATAATTTCACCTGTGAGAATTCTGAAGATACTTCTTTTCTTTATGACCACATTTTGATGTTGGAAAATGTGGGGGTAGAAAGGAAAAAAGGAGGCATTTTCTTCTATCCCGAATAAAGGAAAAGAGGAGGCATTGTGTTATGTGTAAGATTTTTATTGAAGTAGTAGTAAGACTCTCCTTTGTTGTTGCAGCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGGTACGTACATACCCATGCCTATTACTTAAGGCTCAACTACTGCTACTATTAGAAAGATTCTTGAACTGTCAAACGCGGTATAAGACGTGTTTTTTTCATCTCCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAG ATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAGAGAAGCGGGAACTTCAAAACCAGCCCCCAAAAACAAGACCCACAACAACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAACAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCATGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAG ATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAGAGAAGCGGGAACTTCAAAACCAGCCCCCAAAAACAAGACCCACAACAACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAACAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCATGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAG MASSKKSSSEAKSREAGTSKPAPKNKTHNNNNNARTIDKVYSKKKKVSNNNKHTSNGSVKENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNHGKKEQNGYVEEEEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD Homology
BLAST of Csor.00g101620 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.6e-06 Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = 0
BLAST of Csor.00g101620 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.6e-06 Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 0
BLAST of Csor.00g101620 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 7.8e-06 Identity = 35/110 (31.82%), Postives = 58/110 (52.73%), Query Frame = 0
BLAST of Csor.00g101620 vs. NCBI nr
Match: KAG6570775.1 (Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 408 bits (1048), Expect = 7.23e-143 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
BLAST of Csor.00g101620 vs. NCBI nr
Match: KAG7010622.1 (Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 395 bits (1014), Expect = 1.10e-137 Identity = 222/226 (98.23%), Postives = 222/226 (98.23%), Query Frame = 0
BLAST of Csor.00g101620 vs. NCBI nr
Match: XP_023512055.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512056.1 DNA polymerase epsilon subunit C-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 385 bits (990), Expect = 5.76e-134 Identity = 216/228 (94.74%), Postives = 219/228 (96.05%), Query Frame = 0
BLAST of Csor.00g101620 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 384 bits (985), Expect = 3.33e-133 Identity = 217/229 (94.76%), Postives = 220/229 (96.07%), Query Frame = 0
BLAST of Csor.00g101620 vs. NCBI nr
Match: XP_022944557.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 380 bits (975), Expect = 7.52e-132 Identity = 213/224 (95.09%), Postives = 215/224 (95.98%), Query Frame = 0
BLAST of Csor.00g101620 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1) HSP 1 Score: 384 bits (985), Expect = 1.61e-133 Identity = 217/229 (94.76%), Postives = 220/229 (96.07%), Query Frame = 0
BLAST of Csor.00g101620 vs. ExPASy TrEMBL
Match: A0A6J1FVY8 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448974 PE=4 SV=1) HSP 1 Score: 380 bits (975), Expect = 3.64e-132 Identity = 213/224 (95.09%), Postives = 215/224 (95.98%), Query Frame = 0
BLAST of Csor.00g101620 vs. ExPASy TrEMBL
Match: A0A6J1JCZ8 (DNA polymerase epsilon subunit C-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1) HSP 1 Score: 313 bits (801), Expect = 4.52e-106 Identity = 179/191 (93.72%), Postives = 182/191 (95.29%), Query Frame = 0
BLAST of Csor.00g101620 vs. ExPASy TrEMBL
Match: A0A6J1FY58 (DNA polymerase epsilon subunit C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448974 PE=4 SV=1) HSP 1 Score: 309 bits (791), Expect = 1.03e-104 Identity = 175/186 (94.09%), Postives = 177/186 (95.16%), Query Frame = 0
BLAST of Csor.00g101620 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1) HSP 1 Score: 299 bits (766), Expect = 2.90e-100 Identity = 179/233 (76.82%), Postives = 191/233 (81.97%), Query Frame = 0
BLAST of Csor.00g101620 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 ) HSP 1 Score: 94.7 bits (234), Expect = 9.8e-20 Identity = 84/224 (37.50%), Postives = 122/224 (54.46%), Query Frame = 0
BLAST of Csor.00g101620 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 ) HSP 1 Score: 43.5 bits (101), Expect = 2.6e-04 Identity = 28/102 (27.45%), Postives = 60/102 (58.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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