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Csor.00g101580 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCGTCGCTTTCTCTTTGGAACAAACGGAGGAAGTTCCGCCATCTTCACCCCCTGAATCTGCTGTAAGTTTTCCTCCACTGTCCTCTCCTACTCCATTTCCTCACGTTCCGGCGAGTTCACCGGTGGAATCGCCTTTGCACTCTCCTCCTGCGCCTCCGCTCTCAGATCTCGTTCCCAGTCCATCTCCTGCGCGTGGTCCTTCTCCGTCACTGAATCCGGCCCCATCGCCAGCGGCTGATGGCGATTTCCGTAACAGCATTTCTAATAACGGTGGAGAAGAGTCGGAATCCTCCAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCCGCAGCGTGTTTCGTTGGAATAGGAGGAATCGTGTACAAGAAGCGGCAAGACAACATTCGTCGATCTCAGTACGGGAACGCTGCTAGATCTTCGTTCTTATGA ATGAGCGTCGCTTTCTCTTTGGAACAAACGGAGGAAGTTCCGCCATCTTCACCCCCTGAATCTGCTGTAAGTTTTCCTCCACTGTCCTCTCCTACTCCATTTCCTCACGTTCCGGCGAGTTCACCGGTGGAATCGCCTTTGCACTCTCCTCCTGCGCCTCCGCTCTCAGATCTCGTTCCCAGTCCATCTCCTGCGCGTGGTCCTTCTCCGTCACTGAATCCGGCCCCATCGCCAGCGGCTGATGGCGATTTCCGTAACAGCATTTCTAATAACGGTGGAGAAGAGTCGGAATCCTCCAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCCGCAGCGTGTTTCGTTGGAATAGGAGGAATCGTGTACAAGAAGCGGCAAGACAACATTCGTCGATCTCAGTACGGGAACGCTGCTAGATCTTCGTTCTTATGA ATGAGCGTCGCTTTCTCTTTGGAACAAACGGAGGAAGTTCCGCCATCTTCACCCCCTGAATCTGCTGTAAGTTTTCCTCCACTGTCCTCTCCTACTCCATTTCCTCACGTTCCGGCGAGTTCACCGGTGGAATCGCCTTTGCACTCTCCTCCTGCGCCTCCGCTCTCAGATCTCGTTCCCAGTCCATCTCCTGCGCGTGGTCCTTCTCCGTCACTGAATCCGGCCCCATCGCCAGCGGCTGATGGCGATTTCCGTAACAGCATTTCTAATAACGGTGGAGAAGAGTCGGAATCCTCCAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCCGCAGCGTGTTTCGTTGGAATAGGAGGAATCGTGTACAAGAAGCGGCAAGACAACATTCGTCGATCTCAGTACGGGAACGCTGCTAGATCTTCGTTCTTATGA MSVAFSLEQTEEVPPSSPPESAVSFPPLSSPTPFPHVPASSPVESPLHSPPAPPLSDLVPSPSPARGPSPSLNPAPSPAADGDFRNSISNNGGEESESSKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL Homology
BLAST of Csor.00g101580 vs. NCBI nr
Match: KAG6570779.1 (hypothetical protein SDJN03_29694, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 273 bits (698), Expect = 6.11e-92 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of Csor.00g101580 vs. NCBI nr
Match: XP_022944675.1 (alpha carbonic anhydrase 8-like [Cucurbita moschata]) HSP 1 Score: 262 bits (669), Expect = 2.51e-87 Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0
BLAST of Csor.00g101580 vs. NCBI nr
Match: XP_023513399.1 (classical arabinogalactan protein 2-like [Cucurbita pepo subsp. pepo] >XP_023513400.1 classical arabinogalactan protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 254 bits (650), Expect = 1.97e-84 Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 0
BLAST of Csor.00g101580 vs. NCBI nr
Match: XP_022986136.1 (proline-rich receptor-like protein kinase PERK12 [Cucurbita maxima]) HSP 1 Score: 251 bits (640), Expect = 6.59e-83 Identity = 141/150 (94.00%), Postives = 143/150 (95.33%), Query Frame = 0
BLAST of Csor.00g101580 vs. NCBI nr
Match: XP_022995398.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]) HSP 1 Score: 213 bits (542), Expect = 6.57e-68 Identity = 122/150 (81.33%), Postives = 127/150 (84.67%), Query Frame = 0
BLAST of Csor.00g101580 vs. ExPASy TrEMBL
Match: A0A6J1FYT3 (alpha carbonic anhydrase 8-like OS=Cucurbita moschata OX=3662 GN=LOC111449065 PE=4 SV=1) HSP 1 Score: 262 bits (669), Expect = 1.21e-87 Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0
BLAST of Csor.00g101580 vs. ExPASy TrEMBL
Match: A0A6J1JA87 (proline-rich receptor-like protein kinase PERK12 OS=Cucurbita maxima OX=3661 GN=LOC111483972 PE=4 SV=1) HSP 1 Score: 251 bits (640), Expect = 3.19e-83 Identity = 141/150 (94.00%), Postives = 143/150 (95.33%), Query Frame = 0
BLAST of Csor.00g101580 vs. ExPASy TrEMBL
Match: A0A6J1K7T9 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111490958 PE=4 SV=1) HSP 1 Score: 213 bits (542), Expect = 3.18e-68 Identity = 122/150 (81.33%), Postives = 127/150 (84.67%), Query Frame = 0
BLAST of Csor.00g101580 vs. ExPASy TrEMBL
Match: A0A6J1H149 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111459430 PE=4 SV=1) HSP 1 Score: 211 bits (537), Expect = 1.83e-67 Identity = 120/150 (80.00%), Postives = 126/150 (84.00%), Query Frame = 0
BLAST of Csor.00g101580 vs. ExPASy TrEMBL
Match: A0A0A0KGE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1) HSP 1 Score: 181 bits (459), Expect = 1.22e-55 Identity = 109/148 (73.65%), Postives = 118/148 (79.73%), Query Frame = 0
BLAST of Csor.00g101580 vs. TAIR 10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 82.8 bits (203), Expect = 2.6e-16 Identity = 63/133 (47.37%), Postives = 80/133 (60.15%), Query Frame = 0
BLAST of Csor.00g101580 vs. TAIR 10
Match: AT2G28440.1 (proline-rich family protein ) HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09 Identity = 62/163 (38.04%), Postives = 77/163 (47.24%), Query Frame = 0
BLAST of Csor.00g101580 vs. TAIR 10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G45230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06 Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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