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Csor.00g101450 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAAAAAGCGACACCAGCTACGTCTACGTATTCTCCGTCTCCTACCACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGATGTCGACTGGGTTCGCCCTGATGGCCGAAGCTTCCACCAGTGCCGTCCTGCTTGTATGTCTATCCTATTGTTTCATTTAATGTATGCTTAACTACACTTTCTAATTGCTGCTCGTCTAAGCTTATCGTTCTCAATTACTTTATCCTTGCGGAGTACGTTTATGGAATAATTAAATACAGAGCACGCGGGCTTTATTTCTACTATCACAATGCGAGACCAGACGAGCATTCAAATTTGCTCTGTATTCGTATGCTTTTGATATATTTTCCTGATAGCATGAATATGGTCTTGAGCATATTAGTTTATTGATGAAGATTTTCATGGTAATTGTTCATATGGCTTTCCCTTTTCCTGATAGCATGGTTAAAAATGTGTTGTCTCGACATTCAAGTCTTAATGGAAGGTTCTTCCTTGGAGGCATGGTTGGGTACACTTGGTACTTGATAATGAAGTCCTTGACTTCAGCAAAGGATGGTTTTGAACATATGTTACTCGGTGGTTTTTACATTTTTGTTGTTGAATCTATACTAAAACACCACTTTATTGTAACTAAAGTCATTGTTTACTTGCAGTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGGAACACGAAGGTCATTGTTTCTGTGTAAGTTTTAGCTTTCCTCCTACTCCAAGTATCGTGCTCTCTGTGATTTCTAGGTGTCTCTTTGCTGATGAGAGTTTGAGTACCAATGCTTCTACGTGAACTTCCCATTTGATAAACTTGTGTTCCTTTCCTTTTATCGTTTTAGTCTTTTGCTACTGTTTTGTAGTTTTTTGTGCATGAATTAAGAGCTTTCCCCTTTATTCAAATTCTGCATTCTTTTCATCAGATTCGGCCCTAGAGAAAGTAAGAAAGCAATGATGTATAGTGATATTGGCCGGCTCAATTGTAGCGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGAATACTTCCCTTGTTCTATATAGTTTAGATTGTTGTCGTCTGATTAACTCATTTTGTTAGGGATCGGAAAACAAGGAGTTCTCCTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACCACTGTGGATGTATTTGCCTTAGTGTTGGAATCTGGAGGCAGTAAGTATAAGGATTGTTTTAGATGGATGGTAATTGTCCGTATATTGGTAGATAAACATGAACCAGTAATCTAGCTTATTCGCATGTGGGAATACCGACGTAGTTATGATACAATTTTGAAGTAGAAAAAACTAAGATCCTTTTGAGAAGATTCACAAGTAGCATGTTCTAATATCCTTTTGAGAAGATTCAAAAGTATCATGTTCTAATCTCGTAACGTGAAGGAAATTTCAGTTGCTGGTTTTTGTCTCTCTTTTAGAAGATGGTCCATTAACCTAGGTGGAGAATGTTGGTTATTCTTTTTGTGTCACGTAACTATTTGTTAGCTATATCTTTTATATCAAGGTATTCATGATGTGAATTTTGTGCTTGTTGTCATCACTTCGGAGCCTGAACTGACTATTTTTCTTCTTAGCTCTCTGCTGCACCCTCAGAATTTATACTGTTCTTTTTATGTAAACTAAATCTTGTCTACATTGTTATTTTGTTGTTGCAGGCGATCTTCCTGTTGTAATATCATGTGCTAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCTTGTGCACAATCTTAACTCTCCTGTTTCTACGATAATTAATTTTGTATGTCTATCCATCCCAAGTCCACTACTAGCCGACATTGTCCTCTTCAGGCTTTTGTTTCTGGACTTCCCCTCAAGGTTTCAAAACGTGTATGCTAGGAAGAGGTTTTCACACCCTTATAAGGAATATTTCATTCCTCTCCAACCAATGTGGGATCTCACAATCTACTTCCCTTGAGCGCCAGCATCCTCGCTAACACACCATTCGGAACTTGGCTCTGATACCATTTGTAACCGCCCCAAGCCTACCGCTAGTAGATATTGTCTGTTTTGGCTCGTTACATATCGTTGTCAGCCTCACGATTTTAAAATGCATCTACTATGGAGAGGGTCTAGCCCTACTCCGACCAGTGTCTTGCACTGTCCGATGACTAGCTCTAATACCATTTATAACAGCCCAACCCCACCGCTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTCTGGGCTTTCCCTCAAGATTTTAAAACGCGTCTGCTAAGGAGAGATTTTCACACCCTTATAAGGAATGCTTCGTTCCCCTCTCTAACGAACGTGGGATCTCGCAAAATCTTTCAGCAACATGCATTTTATTTTGTGAAGTATATTATGTGTTCTCTTTTCATATGCAACAAGTTTTTTGATTGCACACAATTTTGAATGTATACAGGTATTTGATAATTGAATCCTAAAAGTAGGAGATCTTTGTGTTCCCTTGCCTATTTTCTTCTTTCTGCAATTGAGGAAGATATTTTTATGCTATAAAATGACAATTGGCTGTCCTGAAAACAGAACCTTAAATTTTGTTTCCTGTTTCTATAAAGCACTGATGGTCCTTACGAATTACTATTTGAAGTTCTGATACAATCACACTCTTATTTGTTAACTAGAGCTGCTTTGGTAAGAATCTTCTTATTGATCCTGCATTGGAAGAGGAAAACTACCAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACTGGCGAATGGTCAACCGCTAAAATTAATGAGGTATAACATCAACTTTGAACTTCGTCTTTCAACTATGACAATGATTAAGTACTAAATTAATGATGTTTTTGAGAGTAATTACAAGAGAAGGTTTTATAAACAACAGGGTCAATATTGTTATTTAAAATTTGATACTATGAATACAGAAGAATATGAATTGATTTGTTGTACTGAAAATAAACGAAGTAACACTCTTTGATTACACAGCGTGTAAGTATCTGATGCTTTCGTGATGCCACCACAGGGTATGCAGCTTTGTCTTGATGCTTCGTGTAAGCTTGTGACGATCATGCGGTCATGCTTGAAGGAATCTGCCGCCACGGTTTCAGAGGAATAA ATGGCCAAAAAAGCGACACCAGCTACGTCTACGTATTCTCCGTCTCCTACCACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGATGTCGACTGGGTTCGCCCTGATGGCCGAAGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGGAACACGAAGGTCATTGTTTCTGTATTCGGCCCTAGAGAAAGTAAGAAAGCAATGATGTATAGTGATATTGGCCGGCTCAATTGTAGCGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGAGTTCTCCTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACCACTGTGGATGTATTTGCCTTAGTGTTGGAATCTGGAGGCAGCGATCTTCCTGTTGTAATATCATGTGCTAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGAATCTTCTTATTGATCCTGCATTGGAAGAGGAAAACTACCAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACTGGCGAATGGTCAACCGCTAAAATTAATGAGGGTATGCAGCTTTGTCTTGATGCTTCGTGTAAGCTTGTGACGATCATGCGGTCATGCTTGAAGGAATCTGCCGCCACGGTTTCAGAGGAATAA ATGGCCAAAAAAGCGACACCAGCTACGTCTACGTATTCTCCGTCTCCTACCACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGATGTCGACTGGGTTCGCCCTGATGGCCGAAGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGGAACACGAAGGTCATTGTTTCTGTATTCGGCCCTAGAGAAAGTAAGAAAGCAATGATGTATAGTGATATTGGCCGGCTCAATTGTAGCGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGAGTTCTCCTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACCACTGTGGATGTATTTGCCTTAGTGTTGGAATCTGGAGGCAGCGATCTTCCTGTTGTAATATCATGTGCTAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGAATCTTCTTATTGATCCTGCATTGGAAGAGGAAAACTACCAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACTGGCGAATGGTCAACCGCTAAAATTAATGAGGGTATGCAGCTTTGTCTTGATGCTTCGTGTAAGCTTGTGACGATCATGCGGTCATGCTTGAAGGAATCTGCCGCCACGGTTTCAGAGGAATAA MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE Homology
BLAST of Csor.00g101450 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1) HSP 1 Score: 379.0 bits (972), Expect = 4.2e-104 Identity = 188/257 (73.15%), Postives = 218/257 (84.82%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2) HSP 1 Score: 134.8 bits (338), Expect = 1.4e-30 Identity = 81/216 (37.50%), Postives = 121/216 (56.02%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy Swiss-Prot
Match: Q8U0L9 (Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rrp41 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27 Identity = 80/241 (33.20%), Postives = 126/241 (52.28%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy Swiss-Prot
Match: O59223 (Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=rrp41 PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.9e-27 Identity = 79/241 (32.78%), Postives = 127/241 (52.70%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy Swiss-Prot
Match: B6YSI2 (Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=523850 GN=rrp41 PE=3 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27 Identity = 78/241 (32.37%), Postives = 124/241 (51.45%), Query Frame = 0
BLAST of Csor.00g101450 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 509 bits (1310), Expect = 1.13e-181 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of Csor.00g101450 vs. NCBI nr
Match: XP_022986160.1 (exosome complex component RRP41-like [Cucurbita maxima]) HSP 1 Score: 508 bits (1307), Expect = 3.24e-181 Identity = 257/258 (99.61%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of Csor.00g101450 vs. NCBI nr
Match: XP_022944714.1 (exosome complex component RRP41-like [Cucurbita moschata]) HSP 1 Score: 506 bits (1303), Expect = 1.32e-180 Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of Csor.00g101450 vs. NCBI nr
Match: XP_023512894.1 (exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 504 bits (1298), Expect = 7.63e-180 Identity = 256/258 (99.22%), Postives = 256/258 (99.22%), Query Frame = 0
BLAST of Csor.00g101450 vs. NCBI nr
Match: KAG7010638.1 (Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 499 bits (1284), Expect = 9.32e-178 Identity = 255/258 (98.84%), Postives = 255/258 (98.84%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1) HSP 1 Score: 508 bits (1307), Expect = 1.57e-181 Identity = 257/258 (99.61%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1) HSP 1 Score: 506 bits (1303), Expect = 6.39e-181 Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1) HSP 1 Score: 486 bits (1251), Expect = 5.21e-173 Identity = 245/258 (94.96%), Postives = 252/258 (97.67%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1) HSP 1 Score: 486 bits (1251), Expect = 5.60e-173 Identity = 245/259 (94.59%), Postives = 253/259 (97.68%), Query Frame = 0
BLAST of Csor.00g101450 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1) HSP 1 Score: 481 bits (1237), Expect = 7.35e-171 Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0
BLAST of Csor.00g101450 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein ) HSP 1 Score: 379.0 bits (972), Expect = 3.0e-105 Identity = 188/257 (73.15%), Postives = 218/257 (84.82%), Query Frame = 0
BLAST of Csor.00g101450 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein ) HSP 1 Score: 98.6 bits (244), Expect = 7.8e-21 Identity = 67/223 (30.04%), Postives = 106/223 (47.53%), Query Frame = 0
BLAST of Csor.00g101450 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein ) HSP 1 Score: 98.6 bits (244), Expect = 7.8e-21 Identity = 67/223 (30.04%), Postives = 106/223 (47.53%), Query Frame = 0
BLAST of Csor.00g101450 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein ) HSP 1 Score: 70.1 bits (170), Expect = 3.0e-12 Identity = 51/163 (31.29%), Postives = 77/163 (47.24%), Query Frame = 0
BLAST of Csor.00g101450 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein ) HSP 1 Score: 70.1 bits (170), Expect = 3.0e-12 Identity = 51/163 (31.29%), Postives = 77/163 (47.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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