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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTAAGCTTCTCTACGTTTCGCGCTTTCCGCCGGATGGCTTATGCAAGACTGTTTGGTTGGTACCAAAATGTTGGGCTATCGGTAATGCCATTCCTTGCGGAATCCATTAGAACTCACTCTCTGCTTGAAATCGGAGCAGCTGACGGCCATTCATGGATAATTTCGTTTGGAATACGATACAGTGATTGTGTTACTTCTTTTATTCTCTTTTATCGCCATCCTTTTTAATTTCTCATTCGTATTCTTTGTCCTTCTCGATCGTTGATTATTTTGATTCAGTATCTTTTGGATTCTTTTCCCTTCTTCGGTTAATTTTGTCTTACTGACGAATTTCTGTGAGTTTGAGCTTACTGTTTCAATTCTCTGTTATTCCACAATGTACGAATGTGTTGGAGTACTTATCTATTTCTAGCTGCTATAGAATGTAATACTCGAACTATGTTTTGTGTTTCTGTGAATATTTTGAGCGTATTGATCGTTAGAATTGGTGGAGACAATGTCACTGGTCTTTCACGCATTATTCACAATCTTCCAATCATCGAATGAAATATAATTCATCCGCTTGATCCTGTGTTTTCCGACTCATTCTCACCTCGCTTCATTAATCGAACTGCTTGTTACTTGTATTAGTTCTATGTATAAACAAGTCTCAATCGTGTTAGTAGATTTGATTTTAGTTATTTCATTTGCTGTTGACGTGAAATATTAGCAACGACTTCCTGCAGGTTAAAGGCCACCTTAAAGTCTATGCTCCAACAAACCGAAGGATGAATTTGTATTTATCTGCTTTCTATTAGAGAAATCTCCATTTTCATTTTTGGGTGCTCATTACAGGTACTACAATCTAAGTGCTTGATGGTGGAAAATTGCATTCATTGATTCATTGGAGGGAGGGAATTAGTCGGAGAAGTATCTCTTATTTAATATTTTGTTTTGATTGTGTAATTGGAACAGTACATCCTGA mRNA sequence ATGGTAAGCTTCTCTACGTTTCGCGCTTTCCGCCGGATGGCTTATGCAAGACTGTTTGGTTGGTACCAAAATGTTGGGCTATCGGTAATGCCATTCCTTGCGGAATCCATTAGAACTCACTCTCTGCTTGAAATCGGAGCAGCTGACGGCCATTCATGGATAATTTCGTTTGGAATACGATACAAGAAATCTCCATTTTCATTTTTGGGTGCTCATTACAGTACATCCTGA Coding sequence (CDS) ATGGTAAGCTTCTCTACGTTTCGCGCTTTCCGCCGGATGGCTTATGCAAGACTGTTTGGTTGGTACCAAAATGTTGGGCTATCGGTAATGCCATTCCTTGCGGAATCCATTAGAACTCACTCTCTGCTTGAAATCGGAGCAGCTGACGGCCATTCATGGATAATTTCGTTTGGAATACGATACAAGAAATCTCCATTTTCATTTTTGGGTGCTCATTACAGTACATCCTGA Protein sequence MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIRYKKSPFSFLGAHYSTS
Homology
BLAST of Csor.00g101380 vs. NCBI nr
Match: KAG6570799.1 (hypothetical protein SDJN03_29714, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 157 bits (398), Expect = 1.56e-48 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 Query: 1 MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIR 60 MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIR Sbjct: 1 MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIR 60
Query: 61 YKKSPFSFLGAHYSTS 76 YKKSPFSFLGAHYSTS Sbjct: 61 YKKSPFSFLGAHYSTS 76
BLAST of Csor.00g101380 vs. NCBI nr
Match: KAG7010642.1 (OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 100 bits (248), Expect = 9.65e-23 Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 Query: 13 MAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIRYK 62 MAYARLFGWYQ VGLSVMPFLA+SIRTHSLLEIGAADGH+WIISFGIRY Sbjct: 1 MAYARLFGWYQIVGLSVMPFLAQSIRTHSLLEIGAADGHTWIISFGIRYS 50
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6570799.1 | 1.56e-48 | 100.00 | hypothetical protein SDJN03_29714, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7010642.1 | 9.65e-23 | 92.00 | OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosper... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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