Csor.00g101380 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g101380
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 2516489 .. 2517455 (+)
RNA-Seq ExpressionCsor.00g101380
SyntenyCsor.00g101380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGCTTCTCTACGTTTCGCGCTTTCCGCCGGATGGCTTATGCAAGACTGTTTGGTTGGTACCAAAATGTTGGGCTATCGGTAATGCCATTCCTTGCGGAATCCATTAGAACTCACTCTCTGCTTGAAATCGGAGCAGCTGACGGCCATTCATGGATAATTTCGTTTGGAATACGATACAGTGATTGTGTTACTTCTTTTATTCTCTTTTATCGCCATCCTTTTTAATTTCTCATTCGTATTCTTTGTCCTTCTCGATCGTTGATTATTTTGATTCAGTATCTTTTGGATTCTTTTCCCTTCTTCGGTTAATTTTGTCTTACTGACGAATTTCTGTGAGTTTGAGCTTACTGTTTCAATTCTCTGTTATTCCACAATGTACGAATGTGTTGGAGTACTTATCTATTTCTAGCTGCTATAGAATGTAATACTCGAACTATGTTTTGTGTTTCTGTGAATATTTTGAGCGTATTGATCGTTAGAATTGGTGGAGACAATGTCACTGGTCTTTCACGCATTATTCACAATCTTCCAATCATCGAATGAAATATAATTCATCCGCTTGATCCTGTGTTTTCCGACTCATTCTCACCTCGCTTCATTAATCGAACTGCTTGTTACTTGTATTAGTTCTATGTATAAACAAGTCTCAATCGTGTTAGTAGATTTGATTTTAGTTATTTCATTTGCTGTTGACGTGAAATATTAGCAACGACTTCCTGCAGGTTAAAGGCCACCTTAAAGTCTATGCTCCAACAAACCGAAGGATGAATTTGTATTTATCTGCTTTCTATTAGAGAAATCTCCATTTTCATTTTTGGGTGCTCATTACAGGTACTACAATCTAAGTGCTTGATGGTGGAAAATTGCATTCATTGATTCATTGGAGGGAGGGAATTAGTCGGAGAAGTATCTCTTATTTAATATTTTGTTTTGATTGTGTAATTGGAACAGTACATCCTGA

mRNA sequence

ATGGTAAGCTTCTCTACGTTTCGCGCTTTCCGCCGGATGGCTTATGCAAGACTGTTTGGTTGGTACCAAAATGTTGGGCTATCGGTAATGCCATTCCTTGCGGAATCCATTAGAACTCACTCTCTGCTTGAAATCGGAGCAGCTGACGGCCATTCATGGATAATTTCGTTTGGAATACGATACAAGAAATCTCCATTTTCATTTTTGGGTGCTCATTACAGTACATCCTGA

Coding sequence (CDS)

ATGGTAAGCTTCTCTACGTTTCGCGCTTTCCGCCGGATGGCTTATGCAAGACTGTTTGGTTGGTACCAAAATGTTGGGCTATCGGTAATGCCATTCCTTGCGGAATCCATTAGAACTCACTCTCTGCTTGAAATCGGAGCAGCTGACGGCCATTCATGGATAATTTCGTTTGGAATACGATACAAGAAATCTCCATTTTCATTTTTGGGTGCTCATTACAGTACATCCTGA

Protein sequence

MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIRYKKSPFSFLGAHYSTS
Homology
[Close]
BLAST of Csor.00g101380 vs. NCBI nr
Match: KAG6570799.1 (hypothetical protein SDJN03_29714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157 bits (398), Expect = 1.56e-48
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIR 60
          MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIR
Sbjct: 1  MVSFSTFRAFRRMAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIR 60

Query: 61 YKKSPFSFLGAHYSTS 76
          YKKSPFSFLGAHYSTS
Sbjct: 61 YKKSPFSFLGAHYSTS 76

[Close]
BLAST of Csor.00g101380 vs. NCBI nr
Match: KAG7010642.1 (OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100 bits (248), Expect = 9.65e-23
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 13 MAYARLFGWYQNVGLSVMPFLAESIRTHSLLEIGAADGHSWIISFGIRYK 62
          MAYARLFGWYQ VGLSVMPFLA+SIRTHSLLEIGAADGH+WIISFGIRY 
Sbjct: 1  MAYARLFGWYQIVGLSVMPFLAQSIRTHSLLEIGAADGHTWIISFGIRYS 50

The following BLAST results are available for this feature:
BLAST of Csor.00g101380 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g101380 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570799.11.56e-48100.00hypothetical protein SDJN03_29714, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010642.19.65e-2392.00OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosper... [more]
BLAST of Csor.00g101380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g101380 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g101380.m01Csor.00g101380.m01mRNA