Csor.00g101350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g101350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 2529825 .. 2530064 (-)
RNA-Seq Expression	Csor.00g101350
Synteny	Csor.00g101350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTGTAATCAAGAACAAGACAGATCTCGAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGGGTTGAAGATCCTCCATGAACAAGGAGCTCTATTCATTGTCGCGGTGGAAGCCACTCTATATCGGTCATTGCCGCGTCGCCTGCCTTCCACGCAGCCTACAGACCACCCAGCTTCCACGAGTCCTTTCTCGTTTTTCCTCTCCCTTCGATGGCGAACTAGTTGA

mRNA sequence

ATGGAACCTGTAATCAAGAACAAGACAGATCTCGAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGGGTTGAAGATCCTCCATGAACAAGGAGCTCTATTCATTGTCGCGGTGGAAGCCACTCTATATCGGTCATTGCCGCGTCGCCTGCCTTCCACGCAGCCTACAGACCACCCAGCTTCCACGAGTCCTTTCTCGTTTTTCCTCTCCCTTCGATGGCGAACTAGTTGA

Coding sequence (CDS)

ATGGAACCTGTAATCAAGAACAAGACAGATCTCGAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGGGTTGAAGATCCTCCATGAACAAGGAGCTCTATTCATTGTCGCGGTGGAAGCCACTCTATATCGGTCATTGCCGCGTCGCCTGCCTTCCACGCAGCCTACAGACCACCCAGCTTCCACGAGTCCTTTCTCGTTTTTCCTCTCCCTTCGATGGCGAACTAGTTGA

Protein sequence

MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTDHPASTSPFSFFLSLRWRTS

Homology

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BLAST of Csor.00g101350 vs. NCBI nr
Match: KAG6570802.1 (hypothetical protein SDJN03_29717, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (385), Expect = 1.86e-46
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTD 60
          MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTD
Sbjct: 1  MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTD 60

Query: 61 HPASTSPFSFFLSLRWRTS 79
          HPASTSPFSFFLSLRWRTS
Sbjct: 61 HPASTSPFSFFLSLRWRTS 79

The following BLAST results are available for this feature:

BLAST of Csor.00g101350 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g101350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570802.1	1.86e-46	100.00	hypothetical protein SDJN03_29717, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g101350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g101350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g101350.m01	Csor.00g101350.m01	mRNA