|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAACCTGTAATCAAGAACAAGACAGATCTCGAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGGGTTGAAGATCCTCCATGAACAAGGAGCTCTATTCATTGTCGCGGTGGAAGCCACTCTATATCGGTCATTGCCGCGTCGCCTGCCTTCCACGCAGCCTACAGACCACCCAGCTTCCACGAGTCCTTTCTCGTTTTTCCTCTCCCTTCGATGGCGAACTAGTTGA mRNA sequence ATGGAACCTGTAATCAAGAACAAGACAGATCTCGAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGGGTTGAAGATCCTCCATGAACAAGGAGCTCTATTCATTGTCGCGGTGGAAGCCACTCTATATCGGTCATTGCCGCGTCGCCTGCCTTCCACGCAGCCTACAGACCACCCAGCTTCCACGAGTCCTTTCTCGTTTTTCCTCTCCCTTCGATGGCGAACTAGTTGA Coding sequence (CDS) ATGGAACCTGTAATCAAGAACAAGACAGATCTCGAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGGGTTGAAGATCCTCCATGAACAAGGAGCTCTATTCATTGTCGCGGTGGAAGCCACTCTATATCGGTCATTGCCGCGTCGCCTGCCTTCCACGCAGCCTACAGACCACCCAGCTTCCACGAGTCCTTTCTCGTTTTTCCTCTCCCTTCGATGGCGAACTAGTTGA Protein sequence MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTDHPASTSPFSFFLSLRWRTS
Homology
BLAST of Csor.00g101350 vs. NCBI nr
Match: KAG6570802.1 (hypothetical protein SDJN03_29717, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 152 bits (385), Expect = 1.86e-46 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 Query: 1 MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTD 60 MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTD Sbjct: 1 MEPVIKNKTDLENQEEEEEEEEEELGLKILHEQGALFIVAVEATLYRSLPRRLPSTQPTD 60
Query: 61 HPASTSPFSFFLSLRWRTS 79 HPASTSPFSFFLSLRWRTS Sbjct: 61 HPASTSPFSFFLSLRWRTS 79
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6570802.1 | 1.86e-46 | 100.00 | hypothetical protein SDJN03_29717, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 4..33 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
Relationships
The following mRNA feature(s) are a part of this gene:
|