Csor.00g101270 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g101270
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	50S ribosomal protein
Location	Csor_Chr20: 2556291 .. 2557464 (+)
RNA-Seq Expression	Csor.00g101270
Synteny	Csor.00g101270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGACAGGAAGCAATTCGGCAAGCTCTAGAAACAACAGACCTATCCAAAACTCAAAAACGAAGTAATAGAAAATGTTAAACACGAAATTGGAAGATGGGTTTTCGAATTAGGGTAGAAAGAGAGAAAAGAGGAGGGAGGCTGCGTATCACTTCTTAGAATTGAGATTTCTCAAAATTCTGAAATAATTCTCTAAATTTATGTTGTTGAATGTCCTTATTTGAATAAATTATCTGATGGGCTGCTTATTATTCATTGCAGAGAAGTTTCGGTCTTTGGAAATCGATTGTTGTTACATTATCTTTGTGGGTTCTTGGAGCTCATCGATTGATGATTCAAGGTTCAAAACCTCTAACCATTTAGGTCAGGCTCCCATTAGCTGCAATATTTGATTTTCATATGCATTCTACAATACTGCAACGCTTATGATGTGATTAGATTTCGCTTTTTGATTGAAAATGACTAATAGGAAGCCTAAATTTACTCCATCAGATGTTATGCATACCCTTATAGAGTGTTCATTGTCTTAATGAATGATTTCATCATATGCGTAATCAGATGTTTGCCGGTTTTATAAAATGAAATGGTTCTAAAACCTTGTAACTTATTGCAGTTTTTTGGTCTCTCTGTGTGAATCTATCATTCAATTGTAACTTGTAAGGGATGCTTTTTTAAGGTTGGGCTTAATGGACACTTTGTTTTCCAGAGTATGAACATTAATGGGATATTTTAACATTTTGGATAGGTGATTGGAAGGGGGATTTTGAACATCTAACTGTTGGGAATGACAGTATTAAAGCGCTACGTGGTACGATTATTCATATCTTTAAAGTATATAACCGCAAATGTGGTAGATAGAAACAATGGACGGATTGTCGCAACTGCATCCACAGTTGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAACCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGTGTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA

mRNA sequence

ATGGTAGGACAGGAAGCAATTCGGCAAGCTCTAGAAACAACAGACCTATCCAAAACTCAAAAACGAAAGAAGTTTCGGTCTTTGGAAATCGATTGTTGTTACATTATCTTTGTGGGTTCTTGGAGCTCATCGATTGATGATTCAAGGTTCAAAACCTCTAACCATTTAGGTGATTGGAAGGGGGATTTTGAACATCTAACTGTTGGGAATGACAGTATTAAAGCGCTACGTGTTGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAACCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGTGTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA

Coding sequence (CDS)

ATGGTAGGACAGGAAGCAATTCGGCAAGCTCTAGAAACAACAGACCTATCCAAAACTCAAAAACGAAAGAAGTTTCGGTCTTTGGAAATCGATTGTTGTTACATTATCTTTGTGGGTTCTTGGAGCTCATCGATTGATGATTCAAGGTTCAAAACCTCTAACCATTTAGGTGATTGGAAGGGGGATTTTGAACATCTAACTGTTGGGAATGACAGTATTAAAGCGCTACGTGTTGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAACCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGTGTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA

Protein sequence

MVGQEAIRQALETTDLSKTQKRKKFRSLEIDCCYIIFVGSWSSSIDDSRFKTSNHLGDWKGDFEHLTVGNDSIKALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE

Homology

[Close]

BLAST of Csor.00g101270 vs. NCBI nr
Match: KAG6570810.1 (hypothetical protein SDJN03_29725, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344 bits (883), Expect = 1.57e-119
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MVGQEAIRQALETTDLSKTQKRKKFRSLEIDCCYIIFVGSWSSSIDDSRFKTSNHLGDWK 60
           MVGQEAIRQALETTDLSKTQKRKKFRSLEIDCCYIIFVGSWSSSIDDSRFKTSNHLGDWK
Sbjct: 1   MVGQEAIRQALETTDLSKTQKRKKFRSLEIDCCYIIFVGSWSSSIDDSRFKTSNHLGDWK 60

Query: 61  GDFEHLTVGNDSIKALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRG 120
           GDFEHLTVGNDSIKALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRG
Sbjct: 61  GDFEHLTVGNDSIKALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRG 120

Query: 121 IHMDINKETEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169
           IHMDINKETEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE
Sbjct: 121 IHMDINKETEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169

[Close]

BLAST of Csor.00g101270 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >KAG7010651.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185 bits (469), Expect = 4.80e-57
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKE EKKGF
Sbjct: 34  ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169
           KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE
Sbjct: 94  KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 128

[Close]

BLAST of Csor.00g101270 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184 bits (468), Expect = 6.81e-57
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMD+NKE EKKGF
Sbjct: 34  ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDVNKEIEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169
           KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE
Sbjct: 94  KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 128

[Close]

BLAST of Csor.00g101270 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima])

HSP 1 Score: 182 bits (463), Expect = 3.92e-56
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKE EKKGF
Sbjct: 34  ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169
           KNRTKIWAIVNSLKNNGVKLILDNNDDDA RPSYE
Sbjct: 94  KNRTKIWAIVNSLKNNGVKLILDNNDDDAVRPSYE 128

[Close]

BLAST of Csor.00g101270 vs. NCBI nr
Match: XP_038901007.1 (uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901009.1 uncharacterized protein LOC120088052 [Benincasa hispida])

HSP 1 Score: 173 bits (439), Expect = 1.75e-52
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH D+NKE EKKGF
Sbjct: 34  ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADVNKEIEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169
           KNRTKIWAIVN+LKNNGVKLILDNN DDASR SY+
Sbjct: 94  KNRTKIWAIVNALKNNGVKLILDNNVDDASRSSYQ 128

[Close]

BLAST of Csor.00g101270 vs. ExPASy TrEMBL
Match: A0A6J1FXG0 (uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC111448460 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 2.32e-57
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKE EKKGF
Sbjct: 34  ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169
           KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE
Sbjct: 94  KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 128

[Close]

BLAST of Csor.00g101270 vs. ExPASy TrEMBL
Match: A0A6J1JBQ5 (uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 1.90e-56
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKE EKKGF
Sbjct: 34  ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSYE 169
           KNRTKIWAIVNSLKNNGVKLILDNNDDDA RPSYE
Sbjct: 94  KNRTKIWAIVNSLKNNGVKLILDNNDDDAVRPSYE 128

[Close]

BLAST of Csor.00g101270 vs. ExPASy TrEMBL
Match: A0A6P3ZI60 (uncharacterized protein LOC107411474 OS=Ziziphus jujuba OX=326968 GN=LOC107411474 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 1.66e-52
Identity = 83/100 (83.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 69  GNDSIKALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKE 128
           G +   +  VEHSIKGSLECGRSCNAKAA+VVGEVLAMRLKV+GLEQGQGRGIH+D+NKE
Sbjct: 28  GRNVATSSTVEHSIKGSLECGRSCNAKAASVVGEVLAMRLKVEGLEQGQGRGIHVDVNKE 87

Query: 129 TEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSY 168
            EKKGFKNRTKIWAIVNSLKNNGVKLILD+ND+++SRPSY
Sbjct: 88  VEKKGFKNRTKIWAIVNSLKNNGVKLILDDNDENSSRPSY 127

[Close]

BLAST of Csor.00g101270 vs. ExPASy TrEMBL
Match: A0A2N9ELK5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7658 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 5.31e-51
Identity = 82/93 (88.17%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKV+GLEQGQGRGIH+D+NKE EKKGF
Sbjct: 34  ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDDASRPS 167
           KNRTKIWAIVN+LKNNGVKLILD+NDD+ S+PS
Sbjct: 94  KNRTKIWAIVNALKNNGVKLILDDNDDNTSQPS 126

[Close]

BLAST of Csor.00g101270 vs. ExPASy TrEMBL
Match: A0A5C7GTN9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027435 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 8.13e-51
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 69  GNDSIKALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKE 128
           G   + A  VEHSIK SLECGRSCNAKAAA+VGEVLAMRLKV+GLEQGQGRGIH+D+NKE
Sbjct: 85  GRIVVTASTVEHSIKNSLECGRSCNAKAAAIVGEVLAMRLKVEGLEQGQGRGIHVDVNKE 144

Query: 129 TEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDDDASRPSY 168
            EKKGFKNRTKIWAIVNSLKNNG+KL+L++NDD+ SRPSY
Sbjct: 145 IEKKGFKNRTKIWAIVNSLKNNGIKLLLEDNDDNTSRPSY 184

[Close]

BLAST of Csor.00g101270 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-35
Identity = 67/88 (76.14%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 75  ALRVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKETEKKGF 134
           A  VEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIH D+ KE EKKGF
Sbjct: 34  ASTVEHTIKNSLECGRTCNAKAAAIVGEVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGF 93

Query: 135 KNRTKIWAIVNSLKNNGVKLILDNNDDD 163
           K+RTK+WA++NSL+NNGV LILD++DDD
Sbjct: 94  KSRTKVWAVINSLRNNGVTLILDDDDDD 121

The following BLAST results are available for this feature:

BLAST of Csor.00g101270 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g101270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570810.1	1.57e-119	100.00	hypothetical protein SDJN03_29725, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022943852.1	4.80e-57	96.84	uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 unchar...	[more]
XP_023511782.1	6.81e-57	95.79	uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783....	[more]
XP_022985582.1	3.92e-56	95.79	uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharac...	[more]
XP_038901007.1	1.75e-52	90.53	uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 unchara...	[more]

BLAST of Csor.00g101270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXG0	2.32e-57	96.84	uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1JBQ5	1.90e-56	95.79	uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610...	[more]
A0A6P3ZI60	1.66e-52	83.00	uncharacterized protein LOC107411474 OS=Ziziphus jujuba OX=326968 GN=LOC10741147...	[more]
A0A2N9ELK5	5.31e-51	88.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7658 PE=4 SV=1	[more]
A0A5C7GTN9	8.13e-51	81.00	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027435 PE=4 SV=1	[more]

BLAST of Csor.00g101270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45020.1	6.2e-35	76.14	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 67..154 e-value: 5.1E-5 score: 25.7
None	No IPR available	PANTHER	PTHR12899:SF12	OS09G0549700 PROTEIN	coord: 75..165
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 78..152
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 75..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g101270.m01	Csor.00g101270.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome