Csor.00g100540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g100540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	high mobility group B protein 3-like
Location	Csor_Chr20: 2944552 .. 2947370 (-)
RNA-Seq Expression	Csor.00g100540
Synteny	Csor.00g100540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGTAAGTACAGTTTATAATTTAACTCTAGTGCTCTAAAGAGTCTGCTTCACTCTGAAAACCTTCCTTTACATTCTAGCTTACATTATATTGGTCCGTTCTGATTTACATTCTTGTCTTGGCAAATGATAGGGAGGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTGAGATCCTATACTGTTACTTTTAATCAGCATTGCTTTCTTTTTATGCCTCCATTTATGTTTAGATATGACTGAGTGGAGGATCAGAAGACTTCTCGAGTTGGCTAGATTTGTTAATTGTGGTTAACTGTGTTTTGTTATTTTGCAGGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTGTAAGATCATGAATCTCCTATTTTCATGCTATTTCCATTGAAAACTAATTCGAGGCTAAATAATTATTAGCAGCCTTAACAATAAATGATTAAGCTATAAGATTTGAGGTTAGTTGTTCTAATTTATATGAAGATCGTTTCATGTTTTGCTCTCTGTATTCACTTCGCTACTAGATCAGAGTTATTGACTATACGAGTCTGCTGGCACTTGTGTTTCTTCCTCAGGAAAAAGCTCCTTGCGCTGAAAAAGCTTTGAGAAAGGAAGGCAGAGCATGAGATATCTCTTGAAGCATACACGAAGAATCTCGTAACGCGTTCCCACTCCATCTCTTCTTTCACTCCTTCGGCTTCCATTTAAACACCACCATATGATTCCATTTATTATCTATTGTCCCTATCTCTCTTCTCACTAAGATCTCCTGGCTTACAGAATTGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCAGAGCAGGAAGCTAGCTCCAGCTCTTAGGTATTGTTTCCCTATCCAAAGATTTCATCCTCCGAAGCATGTATGCTATAGCACCAAACAATGTACATCAGCATATCCTCTTCTAGTGATTATAATACCATAGATGTTGATTTTATCATTACGGCCAGCTGATATTTGGTTTTCTACATCGTCTGCCAAGATTTGCAGGACTTCACCGTCCCTTGGAGGTAACAGAATTCCTTATTTTCTCAAATAAAAGTTTCATGGTTATTTGGACGAGAGCTAGCAAGTAGAAAGGGAGTCAAGAGTATGCTAGAACTTACATAACTTTTTAACAATTTTAGAACAAATTTTTAGTAATTTCTTTCGGTACATATGTTGTTCTACGTATGGATATTTCGGAAGATTGGAGTAAGTTGAATTAGGAACAAAGAAATTAAGAAATATATGGATTTGAAACAAAATTTAGTTTTAAATTTCTGTCGAAGATTATCTGTGGTGCTGTATTTGATTACAAGAATCTCTAAAATTTTCATTTAAATAGATTAGAAAGAAAATAGTACTATATTATCCTCTGATCAACTTTAAATATAATACCTATAATAAATTGTAATGGAAGTTAATTATATATAAAAATGAAGCTTATAATCAAAAGTCAAATGTGATAAAAATGTTAAACCAGAGTGAGCTTAGGTGAATGGGAGTGGGGGAGTGAAAGGAGGGAGGATGAGATTAAACTCTAAATTTAAAATAAGGGATGAAATTGGTTTCATCTTCAAAGCTAAATTAGAAAATTAATTAAAATACAAATGAAGTTAACAAACCAAACATCAAATATAACTACAGAAATTCTCGACTCTAAAAGCCACCGAAATTTGACACAATAATCAGAGAGAGTAGTCAGCTTTTGTCGTGGGGAATGGAGTGCAGACGTAATCAAAGGATAACAGGATCCATTGGAGGATCAAGGGTGGAACGAGACACGGGAGAGGATGGCCTCATTATGCCTAATGGATAGGAAAAAGAATTGAAGAAGATGGTGGCGCTTTCGCTGGAAGAGAATTGAAGAAGAATTTTTGTTATTTTACGAAGAATCAGAGTGGATAAAGATTTAAAATATTTTACTCTATGTGCAGAACTTAGCAGCTGTTTCTACATTTGCAAATAGGAGAAACATTTTAGCTACATACTATAATGCCGCTAGTGAACTTTTGAATCTTGTTATAAGACAAAAAGGTCCGATCTTTACCATTTTCTCAAGTAGACTTCTACTTTTGTACTCGCAAGCGCTTAAATGTTTGTAAAAGTTAAACAGCGATTTAAACTAAATTAAACCACCGATGTTGCGATCATTTTCATGTTTATGTGTAGATTTTGTTCTTTGCCAGAAGGGAGTAACTTACAGATGCTGAGAAGGTGGACCTGGCTAAGGAAGAGCAATGGATTTGAAGAAGCCATTGTTAAAAGCTCGCCAAAAGCAATAGAAATCATAAGAAGGGTTTGGAGGTAAGCATTCTGTGGTGTCGGACTGTCGATTCACTTGTTTCTAATCACCATTTTCTTCCTTCTTGTCATAGTTTCCTCTATTTAATTGTACAATCAACTCGTGTTTTTAAAGAAGTTCATGAAACCCATTTTCCTCATCGAACCAGAAATTGATTGGTGTAGTCAATTCATTCTTACCCAGTTGGAAACGATGCGAATGGTCCTCCCACTGTCGCTACGCGATTCTGTAAGTCTCGTGATTCTTATTTCTCTGAACCACTGTAAGGTTCCGTTTCAATGTCGAATTTGTAATTCTATGTAATATATTGTTTCAGTTTAATTCAGTGA

mRNA sequence

ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGGAGGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTAATTGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGAACTTAGCAGCTGTTTCTACATTTGCAAATAGGAGAAACATTTTAGCTACATACTATAATGCCGCTAGTGAACTTTTGAATCTTGTTATAAGACAAAAAGAAGGGAGTAACTTACAGATGCTGAGAAGGTGGACCTGGCTAAGGAAGAGCAATGGATTTGAAGAAGCCATTGTTAAAAGCTCGCCAAAAGCAATAGAAATCATAAGAAGGGTTTGGAGTTGGAAACGATGCGAATGGTCCTCCCACTGTCGCTACGCGATTCTTTTAATTCAGTGA

Coding sequence (CDS)

ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGGAGGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTAATTGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGAACTTAGCAGCTGTTTCTACATTTGCAAATAGGAGAAACATTTTAGCTACATACTATAATGCCGCTAGTGAACTTTTGAATCTTGTTATAAGACAAAAAGAAGGGAGTAACTTACAGATGCTGAGAAGGTGGACCTGGCTAAGGAAGAGCAATGGATTTGAAGAAGCCATTGTTAAAAGCTCGCCAAAAGCAATAGAAATCATAAGAAGGGTTTGGAGTTGGAAACGATGCGAATGGTCCTCCCACTGTCGCTACGCGATTCTTTTAATTCAGTGA

Protein sequence

MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSENLAAVSTFANRRNILATYYNAASELLNLVIRQKEGSNLQMLRRWTWLRKSNGFEEAIVKSSPKAIEIIRRVWSWKRCEWSSHCRYAILLIQ

Homology

[Close]

BLAST of Csor.00g100540 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-14
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 4  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
          + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5  KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64 AVGKAGGEKWKSLSDA 71
          AVGKAGGEKWKSLSD+
Sbjct: 65 AVGKAGGEKWKSLSDS 80

[Close]

BLAST of Csor.00g100540 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 6  KSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWK 65
          K +   TK  K   KD N PKRP + FF+FME+FRKT+KEK P+ K+   VGKAGG+KWK
Sbjct: 17 KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWK 76

Query: 66 SLSDA 71
           L+ A
Sbjct: 77 QLTAA 81

[Close]

BLAST of Csor.00g100540 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 20 KDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA 71
          KD N PKRP + FF+FMEEFRK F ++ P+ KA  AVGKA G KWK++SDA
Sbjct: 39 KDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDA 89

[Close]

BLAST of Csor.00g100540 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-11
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 2  LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGG 61
          L   K   K     K   KD N PKRPA+ FF+FME+FR+TFK++ P  K+   VGKA G
Sbjct: 15 LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 62 EKWKSLSDA 71
          +KWKSLSD+
Sbjct: 75 DKWKSLSDS 83

[Close]

BLAST of Csor.00g100540 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 5   KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKW 64
           +K   + T+  K  KKD N PKR  + FF+F+E+FR TFK++ P+ KA  AVGKAGG+KW
Sbjct: 33  EKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKW 92

Query: 65  KSLSDANCCSGAEAEIEMPTESQK 89
           KS+S A      E   +   E +K
Sbjct: 93  KSMSQAEKAPYEEKAAKRKAEYEK 116

[Close]

BLAST of Csor.00g100540 vs. NCBI nr
Match: KAG6570882.1 (High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365 bits (937), Expect = 2.66e-127
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG
Sbjct: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60

Query: 61  GEKWKSLSDANCCSGAEAEIEMPTESQKSTSENLAAVSTFANRRNILATYYNAASELLNL 120
           GEKWKSLSDANCCSGAEAEIEMPTESQKSTSENLAAVSTFANRRNILATYYNAASELLNL
Sbjct: 61  GEKWKSLSDANCCSGAEAEIEMPTESQKSTSENLAAVSTFANRRNILATYYNAASELLNL 120

Query: 121 VIRQKEGSNLQMLRRWTWLRKSNGFEEAIVKSSPKAIEIIRRVWSWKRCEWSSHCRYAIL 180
           VIRQKEGSNLQMLRRWTWLRKSNGFEEAIVKSSPKAIEIIRRVWSWKRCEWSSHCRYAIL
Sbjct: 121 VIRQKEGSNLQMLRRWTWLRKSNGFEEAIVKSSPKAIEIIRRVWSWKRCEWSSHCRYAIL 180

Query: 181 LIQ 183
           LIQ
Sbjct: 181 LIQ 183

[Close]

BLAST of Csor.00g100540 vs. NCBI nr
Match: KAG7010731.1 (High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (464), Expect = 2.24e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
          MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG
Sbjct: 1  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60

Query: 61 GEKWKSLSDANCCSGAEAEIEMPTESQKSTSE 92
          GEKWKSLSDANCCSGAEAEIEMPTESQKSTSE
Sbjct: 61 GEKWKSLSDANCCSGAEAEIEMPTESQKSTSE 92

[Close]

BLAST of Csor.00g100540 vs. NCBI nr
Match: XP_022140698.1 (high mobility group B protein 3-like [Momordica charantia])

HSP 1 Score: 144 bits (363), Expect = 1.80e-40
Identity = 81/119 (68.07%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQ+K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSE 92
           GEKWKSLSDA                           NCC  A+AE  MPTESQKSTSE
Sbjct: 78  GEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCC--ADAEAAMPTESQKSTSE 134

[Close]

BLAST of Csor.00g100540 vs. NCBI nr
Match: XP_022947100.1 (high mobility group B protein 3-like [Cucurbita moschata])

HSP 1 Score: 143 bits (361), Expect = 3.84e-40
Identity = 78/119 (65.55%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSE 92
           GEKWKS+SDA                           NC + AEAE+EM TESQKSTS+
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAAEAEVEMSTESQKSTSD 136

[Close]

BLAST of Csor.00g100540 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 143 bits (361), Expect = 3.84e-40
Identity = 77/119 (64.71%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQ+K+EMKSTK  K  KKDQNAPKRPAT FF+FMEEFRKTFKE+FPD KAGP VGKAG
Sbjct: 18  MLKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTFKEEFPDAKAGPVVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSE 92
           GEKWKS+SD                            NCC+ AEAEIEMPTESQKSTSE
Sbjct: 78  GEKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADAEAEIEMPTESQKSTSE 136

[Close]

BLAST of Csor.00g100540 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 144 bits (363), Expect = 8.71e-41
Identity = 81/119 (68.07%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQ+K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSE 92
           GEKWKSLSDA                           NCC  A+AE  MPTESQKSTSE
Sbjct: 78  GEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCC--ADAEAAMPTESQKSTSE 134

[Close]

BLAST of Csor.00g100540 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 143 bits (361), Expect = 1.86e-40
Identity = 78/119 (65.55%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSE 92
           GEKWKS+SDA                           NC + AEAE+EM TESQKSTS+
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAAEAEVEMSTESQKSTSD 136

[Close]

BLAST of Csor.00g100540 vs. ExPASy TrEMBL
Match: A0A6J1FWU6 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111448951 PE=3 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.05e-39
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
          MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG
Sbjct: 18 MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 77

Query: 61 GEKWKSLSDA 70
          GEKWKSLSDA
Sbjct: 78 GEKWKSLSDA 87

[Close]

BLAST of Csor.00g100540 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 141 bits (355), Expect = 1.50e-39
Identity = 77/119 (64.71%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSE 92
           GEKWKS+SDA                           NC   AEAE+E+ TESQKSTS+
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAAEAEVELSTESQKSTSD 136

[Close]

BLAST of Csor.00g100540 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 4.33e-33
Identity = 71/118 (60.17%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 2   LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGG 61
           LKQ+K+EMKSTK     KKDQNAPKRPAT FF+FMEEFR  FKE+FPD KAGP VGKAGG
Sbjct: 19  LKQRKAEMKSTK---SKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGG 78

Query: 62  EKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSE 92
           EKWKS+SDA                           NC + AE E+EMPTESQKSTSE
Sbjct: 79  EKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSE 133

[Close]

BLAST of Csor.00g100540 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-15
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 4  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
          + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5  KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64 AVGKAGGEKWKSLSDA 71
          AVGKAGGEKWKSLSD+
Sbjct: 65 AVGKAGGEKWKSLSDS 80

[Close]

BLAST of Csor.00g100540 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-15
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 4  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
          + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5  KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64 AVGKAGGEKWKSLSDA 71
          AVGKAGGEKWKSLSD+
Sbjct: 65 AVGKAGGEKWKSLSDS 80

[Close]

BLAST of Csor.00g100540 vs. TAIR 10
Match: AT1G20696.2 (high mobility group B3 )

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 4   QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
           + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64  AVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKS-TSENLAAVSTFANRRNILATYYNA 123
           AVGKAGGEKWKSLSD+          +   E +K+  + N   V      RN+ + +   
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLVIALRKMRNLTSQFQRL 124

Query: 124 ASELLNLVIRQKEGSNLQMLRRW 137
              ++  +  ++  + ++ L+ W
Sbjct: 125 TMRMMLRMAVKRRKTMIKKLKLW 147

[Close]

BLAST of Csor.00g100540 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 2  LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGG 61
          L   K   K     K   KD N PKRPA+ FF+FME+FR+TFK++ P  K+   VGKA G
Sbjct: 15 LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 62 EKWKSLSDA 71
          +KWKSLSD+
Sbjct: 75 DKWKSLSDS 83

[Close]

BLAST of Csor.00g100540 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 2  LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGG 61
          L   K   K     K   KD N PKRPA+ FF+FME+FR+TFK++ P  K+   VGKA G
Sbjct: 15 LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 62 EKWKSLSDA 71
          +KWKSLSD+
Sbjct: 75 DKWKSLSDS 83

The following BLAST results are available for this feature:

BLAST of Csor.00g100540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93047	6.4e-14	53.95	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	1.6e-12	55.38	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	1.3e-11	62.75	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
O49596	3.0e-11	52.17	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
O49595	5.1e-11	45.24	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]

BLAST of Csor.00g100540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570882.1	2.66e-127	100.00	High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7010731.1	2.24e-56	100.00	High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022140698.1	1.80e-40	68.07	high mobility group B protein 3-like [Momordica charantia]	[more]
XP_022947100.1	3.84e-40	65.55	high mobility group B protein 3-like [Cucurbita moschata]	[more]
XP_038902242.1	3.84e-40	64.71	high mobility group B protein 1-like [Benincasa hispida]	[more]

BLAST of Csor.00g100540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIL2	8.71e-41	68.07	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G5W3	1.86e-40	65.55	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1FWU6	1.05e-39	100.00	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A6J1I4V5	1.50e-39	64.71	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A1S3C2L9	4.33e-33	60.17	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Csor.00g100540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	4.5e-15	53.95	high mobility group B3	[more]
AT1G20696.3	4.5e-15	53.95	high mobility group B3	[more]
AT1G20696.2	5.9e-15	34.27	high mobility group B3	[more]
AT1G20693.1	2.1e-12	52.17	high mobility group B2	[more]
AT1G20693.2	2.1e-12	52.17	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 25..70 e-value: 4.4E-10 score: 39.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 25..101 score: 11.478614
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 18..72 e-value: 1.6E-13 score: 52.9
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 11..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..71
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 25..69 e-value: 2.20837E-10 score: 52.245
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g100540.m01	Csor.00g100540.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin