Csor.00g100500 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g100500
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
LocationCsor_Chr20: 2979123 .. 2979794 (-)
RNA-Seq ExpressionCsor.00g100500
SyntenyCsor.00g100500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAGATTATGGAGTCGAAGACGATGACAACACAGCGATGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGATGTAAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCCAAGTCTGCTGCAGCAGTTGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCAAAATGCTTGAATTCTCCCTTTTGAACACTTTTTTTTTTCTTTTTCTTTAACATAAATTGTAGTCTGGATATTTTTGTAGTTCTGTGAAAACAAACCCAATTTCCTGCATTTTTTCGATCGGACTAGACGAGCTTCAAACGAAAATTTAGACACAAACTGTTATGAATTCCCATTATTTACAACATGACTTTTGAATAGCGCAAATAGGACTGGTTTTAGTTAGTTAAAATAAAACTATACAGAAAAGCTTTGCATTTGAAGGGATAACACAGAGACAACTGATGGGGGTGAGGAGAATATACAAGAAGAAGAGCAAATATGATCCTTTCTCCTTCCCATTTTATGTAGACCTTCCGAGTCTTGTTGTGTTTCAGCACGCCCCGAACGTGTTTTCCCCGCTGTAG

mRNA sequence

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAGATTATGGAGTCGAAGACGATGACAACACAGCGATGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGATGTAAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCCAAGTCTGCTGCAGCAGTTGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGAAAAGCTTTGCATTTGAAGGGATAACACAGAGACAACTGATGGGGGTGAGGAGAATATACAAGAAGAAGAGCAAATATGATCCTTTCTCCTTCCCATTTTATGTAGACCTTCCGAGTCTTGTTGTGTTTCAGCACGCCCCGAACGTGTTTTCCCCGCTGTAG

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAGATTATGGAGTCGAAGACGATGACAACACAGCGATGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGATGTAAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCCAAGTCTGCTGCAGCAGTTGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGAAAAGCTTTGCATTTGAAGGGATAACACAGAGACAACTGATGGGGGTGAGGAGAATATACAAGAAGAAGAGCAAATATGATCCTTTCTCCTTCCCATTTTATGTAGACCTTCCGAGTCTTGTTGTGTTTCAGCACGCCCCGAACGTGTTTTCCCCGCTGTAG

Protein sequence

MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAAVGAQKVKSGTSVGIKWVKNQYQKKKSFAFEGITQRQLMGVRRIYKKKSKYDPFSFPFYVDLPSLVVFQHAPNVFSPL
Homology
BLAST of Csor.00g100500 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264 bits (674), Expect = 1.06e-88
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
           MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA
Sbjct: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKKSFAFEGITQRQLMGVRRIYKKKSKYDPFSFPFYVD 120
           VGAQKVKSGTSVGIKWVKNQYQKKKSFAFEGITQRQLMGVRRIYKKKSKYDPFSFPFYVD
Sbjct: 61  VGAQKVKSGTSVGIKWVKNQYQKKKSFAFEGITQRQLMGVRRIYKKKSKYDPFSFPFYVD 120

Query: 121 LPSLVVFQHAPNVFSPL 137
           LPSLVVFQHAPNVFSPL
Sbjct: 121 LPSLVVFQHAPNVFSPL 137

BLAST of Csor.00g100500 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157 bits (396), Expect = 5.09e-47
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
          MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86
          VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 86

BLAST of Csor.00g100500 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 9.18e-41
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGDYGVEDDDNT-AMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAA 60
          MGSKAPSWADQWGSG+YGVEDDDN  A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 AVGAQKVKSGTSVGIKWVKNQYQKKKS 86
           VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVS 87

BLAST of Csor.00g100500 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133 bits (334), Expect = 1.99e-36
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
           MGSKAPSWADQWGSG+YGVEDDD   + KKGSSNG+SSKKM +VKAAASAGFVKAK+ AA
Sbjct: 91  MGSKAPSWADQWGSGNYGVEDDDKM-VAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVAA 150

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKKS 86
           VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 151 VGAQKVKSGTSVGIKWVKNQYQKKVS 175

BLAST of Csor.00g100500 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131 bits (330), Expect = 1.86e-35
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
           MGSKAPSWADQWGSG+YGVEDDD   + KKGS NG+SSKKM +VKAAASAGFVKAK+ AA
Sbjct: 80  MGSKAPSWADQWGSGNYGVEDDDKM-VAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 139

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKKS 86
           VGAQKVKSGTSVGIKWVKNQYQKK++
Sbjct: 140 VGAQKVKSGTSVGIKWVKNQYQKKET 164

BLAST of Csor.00g100500 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 4.44e-41
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGDYGVEDDDNT-AMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAA 60
          MGSKAPSWADQWGSG+YGVEDDDN  A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 AVGAQKVKSGTSVGIKWVKNQYQKKKS 86
           VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVS 87

BLAST of Csor.00g100500 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 5.82e-40
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGDYGVEDDDNT-AMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAA 60
           MGSKAPSWADQWGSG+YGVEDDDN  A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 145

Query: 61  AVGAQKVKSGTSVGIKWVKNQYQKKKS 86
            VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 146 TVGAQKVKSGTSVGIKWVKNQYQKKVS 172

BLAST of Csor.00g100500 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.79e-33
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
          MGSKAPSWADQWGSG +G E+DDN  +TKK SS+G SSKKMA+ KAAASAGF KAK+AA+
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNKLVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAAS 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86
          VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 VGAQKVKSGTSVGLKWVKKQYQKKSS 85

BLAST of Csor.00g100500 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 8.43e-29
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
          MGSKAPSWADQWG+G +GV+++D+  +TK  SS+G +  K+ +VKAAASAGF KAKSAAA
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86
          VGAQKVK+GTS GIKWVK QYQKK S
Sbjct: 61 VGAQKVKAGTSAGIKWVKKQYQKKGS 84

BLAST of Csor.00g100500 vs. ExPASy TrEMBL
Match: A0A2G5E5C3 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 2.41e-28
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
          M  +APSWADQWGSG YG + +D+   TKKGSS   S KKMAD+K+ ASAG  KAK+AAA
Sbjct: 1  MAKEAPSWADQWGSGGYGADPEDDHNNTKKGSSG--SGKKMADMKSTASAGLDKAKAAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86
          VGAQKVKSGTSVGIKW+KNQYQKK S
Sbjct: 61 VGAQKVKSGTSVGIKWMKNQYQKKTS 84

BLAST of Csor.00g100500 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 7  SWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAAVGAQKV 66
          SWA+QW S      +  ++  T  G   G +S K    K    AG  K K+AA+ G +KV
Sbjct: 5  SWAEQWDS------NQQSSGKTTHGGEGGGASSK---YKEKVGAGLGKTKAAASSGLKKV 64

Query: 67 KSGTSVGIKWVKNQYQK 84
          K GTS+G+ WVK++Y K
Sbjct: 65 KIGTSLGLNWVKDKYNK 72

BLAST of Csor.00g100500 vs. TAIR 10
Match: AT1G11740.1 (ankyrin repeat family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 30/85 (35.29%), Postives = 38/85 (44.71%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60
           M S+APSWADQWG+G  GV   + T   KK  +   S K  A                  
Sbjct: 573 MASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGKTKA------------------ 632

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKK 86
            G  K K    +G+ W+KN  Q+KK
Sbjct: 633 -GINKAKIVVFIGVNWMKNLVQRKK 638

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6570886.11.06e-88100.00hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010736.15.09e-4798.84hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0059574.19.18e-4189.66hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865... [more]
KAG7034974.11.99e-3686.05hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6604861.11.86e-3583.72hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5D3DKS54.44e-4189.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LR115.82e-4089.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1[more]
A0A5C7HG951.79e-3379.07Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1[more]
V4UEV48.43e-2970.93Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ... [more]
A0A2G5E5C32.41e-2872.09Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4... [more]
Match NameE-valueIdentityDescription
AT3G48180.12.4e-0540.26unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G11740.12.1e-0435.29ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR33386OS02G0740600 PROTEINcoord: 1..86
NoneNo IPR availablePANTHERPTHR33386:SF13ANKYRIN REPEAT PROTEINcoord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g100500.m02Csor.00g100500.m02mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007229 integrin-mediated signaling pathway