Csor.00g100330 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGAGCAACGCGAACACCTTGATGCAGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTCCTCCTCAGCTCCCTCGTCTTCTCCTTCTGCGCCAAACAACAAGCTCTTTGTTGCAGGTTCGTTTCTCTTTCGCAATCCCGTCCCACAGATGCTGCCCCAACATGATTCAAATGGTTTATGCATTGAATTTGATCTTGTTTTTTTCCTGCCGCTTCCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGTGAATGTTGAGTTTAAGCCTTTGATGTATGAGTTGTAGTCTACATGTTCGACGAAATGTCTAGTCGATTTCAGACCTCAGTTCATGATGTTTGCTTCTGGGTCGAAGCTTTTTGCTTCAATTCCATTCATAATTCCAATGAGTTTTTAGGAAAAAAGTTGTTTCATTGAAGTTTCCTGTTTTACTATGCTTCTATGATTTTCTTGGGATATTGAGACAGCAAGACAATGAGAAATTTAGAGATTGAAAATTCTGCATGAAGAACTGTGAAGTACAACGAATTTGAGAGGTGGGAAATTAAAATTTATGTTTGAGCTGAAAGAAATTTGATGGCCATTGGTGATCACTCTGGAACTTCTCCAGCAAAATAGCTTATGGACATGGAGTTCATTTGATTTAGTTTAGATGAAATTGAATGGTCTCTGTGAAAAATCAATGGTGGTCATTGTAGAAACCTTGATGCCCATTGGCTATCACTCTGAAACTTCTCCAGAAATTAGCCTATGGAATGCACTTGATATAGTTAGGATGAAATTCAATGGCCACTGAGAAACTTCAGTAATCGTCACTAAAGGAACTTTGATATCCATTGTTGATCACTCTGAAACTGCATCAGCAAATTGCTTATTAATTGAGTTCAAGCATGTTGGATAGTGATTTGAAATGCTTAAATTCATTGTTCTAGAGTTTGCTTTTAATCATTCAAAATCAATTTTGATAGCATAAAACTTATGTTGAATGATAAAAAACGTGTTTATGGGTGATTTTGAACATGAAAAATTATAGTTTAACCATTTCAAAATTACTCTCTAACACGCCCTTTTTCTGTTAAGATTTGAATGCTTATATATACTCTCTTGACAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCAAGTCACTATTTAATAAGAAGTTGTTTGACAATGTTTAATCTAACATCCTAAATTAGTCAAAATGATAGTCATCCCATCACTTTCAGGCACTATTAGGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACGTGTTTGGCCGAAGATCTTGA ATGATGAGCAACGCGAACACCTTGATGCAGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTCCTCCTCAGCTCCCTCGTCTTCTCCTTCTGCGCCAAACAACAAGCTCTTTGTTGCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCACTATTAGGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACGTGTTTGGCCGAAGATCTTGA ATGATGAGCAACGCGAACACCTTGATGCAGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTCCTCCTCAGCTCCCTCGTCTTCTCCTTCTGCGCCAAACAACAAGCTCTTTGTTGCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCACTATTAGGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACGTGTTTGGCCGAAGATCTTGA MMSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISFALDKVRGGPVVIPRLSNINVFGRRS Homology
BLAST of Csor.00g100330 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 5.4e-19 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.0e-17 Identity = 44/103 (42.72%), Postives = 74/103 (71.84%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17 Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2) HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17 Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.5e-16 Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 0
BLAST of Csor.00g100330 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 288 bits (738), Expect = 4.86e-98 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of Csor.00g100330 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 280 bits (717), Expect = 7.74e-95 Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Csor.00g100330 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 276 bits (706), Expect = 3.81e-93 Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0
BLAST of Csor.00g100330 vs. NCBI nr
Match: KAG7010748.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 276 bits (705), Expect = 4.72e-93 Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0
BLAST of Csor.00g100330 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 274 bits (701), Expect = 2.21e-92 Identity = 145/151 (96.03%), Postives = 146/151 (96.69%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1) HSP 1 Score: 280 bits (717), Expect = 3.75e-95 Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1) HSP 1 Score: 274 bits (701), Expect = 1.07e-92 Identity = 145/151 (96.03%), Postives = 146/151 (96.69%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1) HSP 1 Score: 238 bits (608), Expect = 2.48e-78 Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy TrEMBL
Match: A0A6J1CG90 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111011148 PE=4 SV=1) HSP 1 Score: 229 bits (585), Expect = 4.06e-75 Identity = 123/151 (81.46%), Postives = 131/151 (86.75%), Query Frame = 0
BLAST of Csor.00g100330 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1) HSP 1 Score: 229 bits (583), Expect = 1.18e-74 Identity = 121/149 (81.21%), Postives = 131/149 (87.92%), Query Frame = 0
BLAST of Csor.00g100330 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 155.6 bits (392), Expect = 3.1e-38 Identity = 90/140 (64.29%), Postives = 102/140 (72.86%), Query Frame = 0
BLAST of Csor.00g100330 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 95.5 bits (236), Expect = 3.8e-20 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 0
BLAST of Csor.00g100330 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 95.5 bits (236), Expect = 3.8e-20 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 0
BLAST of Csor.00g100330 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 ) HSP 1 Score: 91.7 bits (226), Expect = 5.5e-19 Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 0
BLAST of Csor.00g100330 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 ) HSP 1 Score: 91.3 bits (225), Expect = 7.2e-19 Identity = 44/103 (42.72%), Postives = 74/103 (71.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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