Csor.00g098840 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGCTACTGACGAGACTCACCACCACCATATGCAAGGTATGGCGCCGCCGCCGGCCTCTTCCGCCGCGTCGTCGGGGATGACGATGCATCACCGGATGATGCACATGACCTTCTTTTGGGGAACTAACGCTGAGATTCTGTTCCGTAACTGGCCTGGAGACCGATCCGGTATGTACGCCTTGGCCTTGATCTTCATTTTCGTGCTTGCTTTCCTCGTCGAGTGGCTTTCGCATAGCCGATTGATTAGGGAAGATTCTAGCTCCGTAGCGGGGCTGATTCGATTTGGAATTTTGAAGGTTCAAAACCGAAATTTGTTTTCTGGAATTCTTGCAGCTTATCTGAAGTTATAA ATGGACGCTACTGACGAGACTCACCACCACCATATGCAAGGTATGGCGCCGCCGCCGGCCTCTTCCGCCGCGTCGTCGGGGATGACGATGCATCACCGGATGATGCACATGACCTTCTTTTGGGGAACTAACGCTGAGATTCTGTTCCGTAACTGGCCTGGAGACCGATCCGGTATGTACGCCTTGGCCTTGATCTTCATTTTCGTGCTTGCTTTCCTCGTCGAGTGGCTTTCGCATAGCCGATTGATTAGGGAAGATTCTAGCTCCGTAGCGGGGCTGATTCGATTTGGAATTTTGAAGGTTCAAAACCGAAATTTGTTTTCTGGAATTCTTGCAGCTTATCTGAAGTTATAA ATGGACGCTACTGACGAGACTCACCACCACCATATGCAAGGTATGGCGCCGCCGCCGGCCTCTTCCGCCGCGTCGTCGGGGATGACGATGCATCACCGGATGATGCACATGACCTTCTTTTGGGGAACTAACGCTGAGATTCTGTTCCGTAACTGGCCTGGAGACCGATCCGGTATGTACGCCTTGGCCTTGATCTTCATTTTCGTGCTTGCTTTCCTCGTCGAGTGGCTTTCGCATAGCCGATTGATTAGGGAAGATTCTAGCTCCGTAGCGGGGCTGATTCGATTTGGAATTTTGAAGGTTCAAAACCGAAATTTGTTTTCTGGAATTCTTGCAGCTTATCTGAAGTTATAA MDATDETHHHHMQGMAPPPASSAASSGMTMHHRMMHMTFFWGTNAEILFRNWPGDRSGMYALALIFIFVLAFLVEWLSHSRLIREDSSSVAGLIRFGILKVQNRNLFSGILAAYLKL Homology
BLAST of Csor.00g098840 vs. ExPASy Swiss-Prot
Match: Q9STG2 (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20 Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2) HSP 1 Score: 97.8 bits (242), Expect = 8.5e-20 Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy Swiss-Prot
Match: Q94EE4 (Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16 Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 2.2e-15 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy Swiss-Prot
Match: Q60EN8 (Copper transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT2 PE=1 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 7.7e-13 Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0
BLAST of Csor.00g098840 vs. NCBI nr
Match: KAG6607278.1 (Copper transporter 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 237 bits (604), Expect = 1.13e-78 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Csor.00g098840 vs. NCBI nr
Match: XP_022948633.1 (copper transporter 1-like [Cucurbita moschata]) HSP 1 Score: 193 bits (490), Expect = 8.86e-61 Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0
BLAST of Csor.00g098840 vs. NCBI nr
Match: XP_023523443.1 (copper transporter 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 189 bits (479), Expect = 4.20e-59 Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0
BLAST of Csor.00g098840 vs. NCBI nr
Match: XP_022998909.1 (copper transporter 1-like [Cucurbita maxima]) HSP 1 Score: 180 bits (457), Expect = 9.39e-56 Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of Csor.00g098840 vs. NCBI nr
Match: XP_004145275.1 (copper transporter 1 [Cucumis sativus] >XP_031741185.1 copper transporter 1-like [Cucumis sativus]) HSP 1 Score: 148 bits (373), Expect = 5.64e-43 Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy TrEMBL
Match: A0A6J1G9U6 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111452256 PE=3 SV=1) HSP 1 Score: 193 bits (490), Expect = 4.29e-61 Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy TrEMBL
Match: A0A6J1KFM2 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493432 PE=3 SV=1) HSP 1 Score: 180 bits (457), Expect = 4.55e-56 Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy TrEMBL
Match: A0A0A0LVF3 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526830 PE=3 SV=1) HSP 1 Score: 148 bits (373), Expect = 2.73e-43 Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy TrEMBL
Match: A0A1S3C5M2 (Copper transporter OS=Cucumis melo OX=3656 GN=LOC103497118 PE=3 SV=1) HSP 1 Score: 145 bits (366), Expect = 3.16e-42 Identity = 72/96 (75.00%), Postives = 77/96 (80.21%), Query Frame = 0
BLAST of Csor.00g098840 vs. ExPASy TrEMBL
Match: A0A5A7SLZ1 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001730 PE=3 SV=1) HSP 1 Score: 145 bits (366), Expect = 3.80e-42 Identity = 72/96 (75.00%), Postives = 77/96 (80.21%), Query Frame = 0
BLAST of Csor.00g098840 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 ) HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21 Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0
BLAST of Csor.00g098840 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 ) HSP 1 Score: 97.8 bits (242), Expect = 6.0e-21 Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 0
BLAST of Csor.00g098840 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family ) HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 0
BLAST of Csor.00g098840 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 ) HSP 1 Score: 71.2 bits (173), Expect = 6.0e-13 Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Csor.00g098840 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 ) HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10 Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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