Csor.00g097320 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g097320
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L21
Location	Csor_Chr14: 1869723 .. 1871015 (+)
RNA-Seq Expression	Csor.00g097320
Synteny	Csor.00g097320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCTGGCCATGGACTTAGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTAACTACTTATTTGAGGACCTTCAAGATCGGCGACTATGTTGACGTCAAAGTGAACGGCGCCATCCACAAAGGAATGCCGCATAAATTCTACCATGGTCGTACCGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAACAAGCAGGTCGATTTCTGTAACCGTTTTCACTTGTGATTGTATTGGTTCTGTTTTCCGTTCTTTTATTCGATCTGTTCTGGTGTTGATTCTACTCTGTATTATTGGAATATCTATGAATTTGGTGATTTAGGTTTAGGCTGGATTTATGGACTCTGTTCTATCTATTCAGTTTCTGATTGCTGTTGACTTGTTCAGAGAATGTTGAATATGCATCTGTTAATTTGTTTAGCAACTCATTCAGTTGTTGTTTCGGATATCGCGTGGCTTTTGATAGTCGAATGCTTTGCGTAACTATGGCCATTTCCTTTTTCTTTTTGCTGATTGATGCTGCTGGAATTTGAATTCATGTCAGATTTGTTTGTTAATAATCGGTTATTGCATATGCATTTGAAGAGTTGAATGTTTTGTGCCCTATCTGCCTTAGGGTGGGTAGTGTTCATCAATCGATTAGGTTTAATGTTTTGTGCCCTATCTGCCTTAGGGTGGGCATTTGAAGAGTTGAATGTTTTGTGCCCTATCTGCCTTAGGGTGGGTAGTGTTCATCAATCGATTAGGTTTAATGTTTTGTGCCCTATCTGCCTTAGGGTGGGCATTTGAAGAGTTGAATGTTTTGTGCCCTATCTGCCTTAGGGTGGGTAGTGTTCATCAATCGATTAGGTTTTTGGATGTAAAAGGCTTATCATTATAGGGTATCTGTATGATTATCCAGTCATCTAAACGAAGTTGTAGCCTCTGTTATTTGATTGTGATTCAAGCATTTTTCAAACCCACTTGTGTTCTGATGTTCTATATTAAAATTTTCAGGTGGGCAACAGAATCATAAGGAAGAGAATCCATGTCCGGGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAATGATCAACTGAAGGCTGAAGCCAAGGCCAAAGGTGAAGTCATTTGCACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTCGTCAATGATCTCAAGGGTGGTTATTAG

mRNA sequence

ATGCCGGCTGGCCATGGACTTAGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTAACTACTTATTTGAGGACCTTCAAGATCGGCGACTATGTTGACGTCAAAGTGAACGGCGCCATCCACAAAGGAATGCCGCATAAATTCTACCATGGTCGTACCGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAACAAGCAGGTGGGCAACAGAATCATAAGGAAGAGAATCCATGTCCGGGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAATGATCAACTGAAGGCTGAAGCCAAGGCCAAAGGTGAAGTCATTTGCACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTCGTCAATGATCTCAAGGGTGGTTATTAG

Coding sequence (CDS)

ATGCCGGCTGGCCATGGACTTAGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTAACTACTTATTTGAGGACCTTCAAGATCGGCGACTATGTTGACGTCAAAGTGAACGGCGCCATCCACAAAGGAATGCCGCATAAATTCTACCATGGTCGTACCGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAACAAGCAGGTGGGCAACAGAATCATAAGGAAGAGAATCCATGTCCGGGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAATGATCAACTGAAGGCTGAAGCCAAGGCCAAAGGTGAAGTCATTTGCACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTCGTCAATGATCTCAAGGGTGGTTATTAG

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY

Homology

[Close]

BLAST of Csor.00g097320 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 306.6 bits (784), Expect = 1.7e-82
Identity = 143/164 (87.20%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.8e-82
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  FKIG+YVDV  N A+HKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TG VWNVTKRAIGVEINK+V +RII+KRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of Csor.00g097320 vs. ExPASy Swiss-Prot
Match: Q54X53 (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRTF++GDYVD+K  G +HKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R  +N +   EAK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of Csor.00g097320 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-41
Identity = 82/157 (52.23%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ +K+GD VD+K NG+I KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TG V+NVTK ++GV INK VGNR + KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of Csor.00g097320 vs. NCBI nr
Match: KAG6580788.1 (60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335 bits (859), Expect = 4.92e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. NCBI nr
Match: XP_022934302.1 (60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal protein L21-1 [Cucurbita maxima] >XP_023527248.1 60S ribosomal protein L21-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527250.1 60S ribosomal protein L21-1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527251.1 60S ribosomal protein L21-1 [Cucurbita pepo subsp. pepo] >KAG6580787.1 60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335 bits (858), Expect = 6.98e-116
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. NCBI nr
Match: XP_022934303.1 (60S ribosomal protein L21-1-like [Cucurbita moschata])

HSP 1 Score: 333 bits (854), Expect = 2.85e-115
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRC EEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. NCBI nr
Match: XP_022983129.1 (60S ribosomal protein L21-1-like [Cucurbita maxima])

HSP 1 Score: 332 bits (850), Expect = 1.16e-114
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEF LRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFCLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 329 bits (844), Expect = 9.54e-114
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1)

HSP 1 Score: 335 bits (858), Expect = 3.38e-116
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. ExPASy TrEMBL
Match: A0A6J1F2B9 (60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 SV=1)

HSP 1 Score: 335 bits (858), Expect = 3.38e-116
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. ExPASy TrEMBL
Match: A0A6J1F7A4 (60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 PE=3 SV=1)

HSP 1 Score: 333 bits (854), Expect = 1.38e-115
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRC EEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. ExPASy TrEMBL
Match: A0A6J1J6F8 (60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=3 SV=1)

HSP 1 Score: 332 bits (850), Expect = 5.61e-115
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEF LRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFCLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. ExPASy TrEMBL
Match: A0A6J1KU90 (60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=3 SV=1)

HSP 1 Score: 328 bits (841), Expect = 1.32e-113
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCAEEF LRKVKNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-83
Identity = 143/164 (87.20%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-83
Identity = 143/164 (87.20%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 305.4 bits (781), Expect = 2.7e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Csor.00g097320 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 305.4 bits (781), Expect = 2.7e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of Csor.00g097320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43291	1.7e-82	87.20	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q9FDZ9	3.8e-82	86.59	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
O82574	1.1e-41	56.96	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]
Q54X53	1.1e-41	54.09	60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=...	[more]
Q02753	4.2e-41	52.23	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of Csor.00g097320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580788.1	4.92e-116	100.00	60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934302.1	6.98e-116	99.39	60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal p...	[more]
XP_022934303.1	2.85e-115	98.78	60S ribosomal protein L21-1-like [Cucurbita moschata]	[more]
XP_022983129.1	1.16e-114	98.78	60S ribosomal protein L21-1-like [Cucurbita maxima]	[more]
XP_038906379.1	9.54e-114	96.34	60S ribosomal protein L21-1 [Benincasa hispida]	[more]

BLAST of Csor.00g097320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYF0	3.38e-116	99.39	60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=...	[more]
A0A6J1F2B9	3.38e-116	99.39	60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 S...	[more]
A0A6J1F7A4	1.38e-115	98.78	60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 P...	[more]
A0A6J1J6F8	5.61e-115	98.78	60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=...	[more]
A0A6J1KU90	1.32e-113	96.95	60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=...	[more]

BLAST of Csor.00g097320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09590.1	1.2e-83	87.20	Translation protein SH3-like family protein	[more]
AT1G09690.1	1.2e-83	87.20	Translation protein SH3-like family protein	[more]
AT1G57660.1	2.7e-83	86.59	Translation protein SH3-like family protein	[more]
AT1G57860.1	2.7e-83	86.59	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..97 e-value: 2.0E-45 score: 154.8
None	No IPR available	GENE3D	6.10.250.3260		coord: 99..156 e-value: 3.3E-24 score: 86.7
None	No IPR available	PANTHER	PTHR20981:SF21	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..101 e-value: 3.3E-45 score: 152.1
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g097320.m01	Csor.00g097320.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome