Csor.00g093300 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g093300
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 1291270 .. 1292988 (-)
RNA-Seq Expression	Csor.00g093300
Synteny	Csor.00g093300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAATGGGTTTGGACCAGAAGGGACGAGTCGTTTTTCGACGCCATACCGGGGATCGATCTCGGCTGCAGCCGGGGGAGAGGCGGCGAGAGGGTGGGCATGGGTGTGGTGGTGGTGGTGGTGGAGGTGGTTGTGACGGTGGTGAAAGGTGGTGAAGTGAAATTTAGGAGACAAGAGCTTTCTGGAATGGGAAAAAGATGGGGGTTTTGGAATGTTGTGAAGAGAAGCTCCATGACAGAAGATGGGTGAGAAGGAGAGGAGGAGGAGGAGGAGGAGGAGAAGAGAGAAGAATTTGGAGAGGTTTAATGGCATGATTAATAATGGTGTGGAGGGTGGGGAGAGGGAGGGGAGAATGGGAGGGAGAGGGATGCATGGAAGAGAGAAAGAGAAGGGAGAGGATTAAGAAATGGGGTTTAATTCTGGGAGTTTGAATATAAAAAGGTTGACTTTTGGACTGTATTTGTAGAGAGAGAAGAAGAAGATGAAGAAGAAGAAGGGAGACAAACTGTCTCAGAATTCTTGTTTCAATGACAACTTCCTTTGCGTTCAAGGAACTAACCCTCATTTAAAGCAGATTGTCAAACTTTCAATATTATATATATATATATATATATATATATGTATGTATGTATGTATATATAATGTTAGAAGTTGTTTAAATTTCAACCTCAAACTATAAAAAAAAATTATAGATGAAATAAATAACAGAGAATTGATATATACAATGATTTAAAAAAACATATATAAAAATGAATAATATTTATATAATCTTAGGCCAGCAAAACATGTTCAATTATTTTTAGTATTAATTAACAAATAAAAATATGAAATTCTGCAACTAGAAGTCCTGATTTGTCTCTTATACAGTGGTTCCAACCCCTTGCCGAACTCATTTGAAATGAGTGTGGGAACGAAACATTTTTTTAGATGGATGTGGAAATCTCACGCTAGCAGATGAGTTATAAAATCGTGAGACTCGACGAACAATACATCATGAGTCAAAACAGACAATATCTGGTATTAGTGAGCTTAGTCATTATAAATGGTAGTCGAGCTATGTGCTAGAAGACGCTAAGTCTCAAAGGGGAATGGATTGTGAGATCTCATATCAATTCGAGAGGGGAATAAGTGTCCGTAAAGACATTGGGCTTCAAAGGGATGAATTGTAAGATCTCACATCGGTTGGAGAGAAAGAATTTGAATCATTACACAATCAACAAAGATCCAATATGATTGAGTGTGCAAACCCAAGTTCCCAAGCAAAATATTTCTTTTTGTTAAAAAAACAAAGCACAGCCCCTTTTCTTCCGGAAGTGGGAAAATGACCTTTGAATGGCTTTCTTTCAAGATCACTTTGTCGGCTAAGCTCTCAATATCATGCCTTTATATCTTATCACTAGAAAATATTGACCATTCGATCATTCACCACGATGTAAATGGGGAAGACAATTCTTATGCAGAAATGTCGGCATCGGTTGGGAAAAACTGATGAGATGAGGAAGGGGAAAGTCAAATCACCCCCCACCTAGGATTGACTTTGCTTAAACTACAGACACCTTCCACCTAATAACACTCGGAGTTCACATTTGGCATATCAGAGTCAGAAGGGATAGCCTTAAACCTGATGGCTTGAGGCTTTCCTACTCATATTCCTTCTGTTCTTTCCAGCTAGTCCACTACATGGCTGAGAAGTTGAGCAACCTCCCTCTGTCCTGA

mRNA sequence

ATGGTGCAATGGGTTTGGACCAGAAGGGACGAGTCGTTTTTCGACGCCATACCGGGGATCGATCTCGGCTGCAGCCGGGGGAGAGGCGGCGAGAGGGTGGGCATGGGTGTGGTGGTGGTGGTGGTGGAGGTGGTTGTGACGGTGGTGAAAGGTGGTGAAGTGAAATTTAGGAGACAAGAGCTTTCTGGAATGGGAAAAAGATGGGGGTTTTGGAATGTTGTGAAGAGAAGCTCCATGACAGAAGATGGAGTCAGAAGGGATAGCCTTAAACCTGATGGCTTGAGGCTTTCCTACTCATATTCCTTCTGTTCTTTCCAGCTAGTCCACTACATGGCTGAGAAGTTGAGCAACCTCCCTCTGTCCTGA

Coding sequence (CDS)

ATGGTGCAATGGGTTTGGACCAGAAGGGACGAGTCGTTTTTCGACGCCATACCGGGGATCGATCTCGGCTGCAGCCGGGGGAGAGGCGGCGAGAGGGTGGGCATGGGTGTGGTGGTGGTGGTGGTGGAGGTGGTTGTGACGGTGGTGAAAGGTGGTGAAGTGAAATTTAGGAGACAAGAGCTTTCTGGAATGGGAAAAAGATGGGGGTTTTGGAATGTTGTGAAGAGAAGCTCCATGACAGAAGATGGAGTCAGAAGGGATAGCCTTAAACCTGATGGCTTGAGGCTTTCCTACTCATATTCCTTCTGTTCTTTCCAGCTAGTCCACTACATGGCTGAGAAGTTGAGCAACCTCCCTCTGTCCTGA

Protein sequence

MVQWVWTRRDESFFDAIPGIDLGCSRGRGGERVGMGVVVVVVEVVVTVVKGGEVKFRRQELSGMGKRWGFWNVVKRSSMTEDGVRRDSLKPDGLRLSYSYSFCSFQLVHYMAEKLSNLPLS

Homology

[Close]

BLAST of Csor.00g093300 vs. NCBI nr
Match: KAG6587626.1 (hypothetical protein SDJN03_16191, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 8.16e-83
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVQWVWTRRDESFFDAIPGIDLGCSRGRGGERVGMGVVVVVVEVVVTVVKGGEVKFRRQE 60
           MVQWVWTRRDESFFDAIPGIDLGCSRGRGGERVGMGVVVVVVEVVVTVVKGGEVKFRRQE
Sbjct: 1   MVQWVWTRRDESFFDAIPGIDLGCSRGRGGERVGMGVVVVVVEVVVTVVKGGEVKFRRQE 60

Query: 61  LSGMGKRWGFWNVVKRSSMTEDGVRRDSLKPDGLRLSYSYSFCSFQLVHYMAEKLSNLPL 120
           LSGMGKRWGFWNVVKRSSMTEDGVRRDSLKPDGLRLSYSYSFCSFQLVHYMAEKLSNLPL
Sbjct: 61  LSGMGKRWGFWNVVKRSSMTEDGVRRDSLKPDGLRLSYSYSFCSFQLVHYMAEKLSNLPL 120

[Close]

BLAST of Csor.00g093300 vs. NCBI nr
Match: KAG6589564.1 (hypothetical protein SDJN03_14987, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 1.48e-14
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1  MVQWVWTRRDESFFDAIPGIDLGCSRGRGGERVGMGVVVVVVEVVVTVVKGGEVKFRRQE 60
          MVQW+WT RDESFFDA+PGIDL CS GR G  V + VV+ +  ++  V + GEVKF   E
Sbjct: 1  MVQWIWTSRDESFFDAVPGIDLRCSWGRIGVMVAV-VVMAITSLMEMVKEDGEVKF---E 60

Query: 61 LSGMGKRWGFWNVVKRSSMTEDGV 84
          LS   K    W  ++R  M E+GV
Sbjct: 61 LSVERKGGVIWVGMERKGMKEEGV 80

The following BLAST results are available for this feature:

BLAST of Csor.00g093300 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g093300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587626.1	8.16e-83	100.00	hypothetical protein SDJN03_16191, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589564.1	1.48e-14	51.19	hypothetical protein SDJN03_14987, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g093300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g093300 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g093300.m01	Csor.00g093300.m01	mRNA