Csor.00g092810 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g092810
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 1535753 .. 1536390 (-)
RNA-Seq Expression	Csor.00g092810
Synteny	Csor.00g092810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTGAAGATGTTGATGATTTCGATCGAAACCTTAGAAACTGAGGAGTGTGTTTCGATCAGAATTGCCGACAATGAACATGAACGTGTATTTCTACCGTTGATGATGTTGAAGATTTGGATCAGAAATGCTGCCGGAGATGATTCTGATGATGTTGATGAGCCTCGTCCGAAATGTTCGGAAAGATCGGGACCAGGAGAGAGACAATTTGGAAAAGGTTGGAGAGCAGGAATAGGAGTCCATTGGAGGCACCTGAACAGCTCGTCTCCACCTTTCTGCACTCTCAATGCCGAGTTCTTGCTGACACAGGTTTGCCAATTTTCTTATGTTATGTGATGTGGGTCATTTCTTAACCTAATTTCCTTTGATGTGCCTCATTTTGCCTTCCTCCTCTCTCTACACATTTCTTAACCTAATACCTTTTTATTATTTCCTTTTTCATACACCTTTCTGACTCACGCAAACCATAGCACAACATTAGTTTTGTTCAGCCATGCCCTCAACCAGGGCAGATTAATTTCTTGGACAAAAACAGCCTATGCCCTACAGATAACAAAGGAGTCACCTTGAAGGGCCAGATGTTTTTAGGTACAGCGCAACCACCATTTATGGCTTCGGCTATTCGGAACCCCTAA

mRNA sequence

ATGATTCTGAAGATGTTGATGATTTCGATCGAAACCTTAGAAACTGAGGAGTGTGTTTCGATCAGAATTGCCGACAATGAACATGAACGTGTATTTCTACCGTTGATGATGTTGAAGATTTGGATCAGAAATGCTGCCGGAGATGATTCTGATGATGTTGATGAGCCTCGTCCGAAATGTTCGGAAAGATCGGGACCAGGAGAGAGACAATTTGGAAAAGGTTGGAGAGCAGGAATAGGAGTCCATTGGAGGCACCTGAACAGCTCGTCTCCACCTTTCTGCACTCTCAATGCCGAGTTCTTGCTGACACAGCACAACATTAGTTTTGTTCAGCCATGCCCTCAACCAGGGCAGATTAATTTCTTGGACAAAAACAGCCTATGCCCTACAGATAACAAAGGAGTCACCTTGAAGGGCCAGATGTTTTTAGGTACAGCGCAACCACCATTTATGGCTTCGGCTATTCGGAACCCCTAA

Coding sequence (CDS)

ATGATTCTGAAGATGTTGATGATTTCGATCGAAACCTTAGAAACTGAGGAGTGTGTTTCGATCAGAATTGCCGACAATGAACATGAACGTGTATTTCTACCGTTGATGATGTTGAAGATTTGGATCAGAAATGCTGCCGGAGATGATTCTGATGATGTTGATGAGCCTCGTCCGAAATGTTCGGAAAGATCGGGACCAGGAGAGAGACAATTTGGAAAAGGTTGGAGAGCAGGAATAGGAGTCCATTGGAGGCACCTGAACAGCTCGTCTCCACCTTTCTGCACTCTCAATGCCGAGTTCTTGCTGACACAGCACAACATTAGTTTTGTTCAGCCATGCCCTCAACCAGGGCAGATTAATTTCTTGGACAAAAACAGCCTATGCCCTACAGATAACAAAGGAGTCACCTTGAAGGGCCAGATGTTTTTAGGTACAGCGCAACCACCATTTATGGCTTCGGCTATTCGGAACCCCTAA

Protein sequence

MILKMLMISIETLETEECVSIRIADNEHERVFLPLMMLKIWIRNAAGDDSDDVDEPRPKCSERSGPGERQFGKGWRAGIGVHWRHLNSSSPPFCTLNAEFLLTQHNISFVQPCPQPGQINFLDKNSLCPTDNKGVTLKGQMFLGTAQPPFMASAIRNP

Homology

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BLAST of Csor.00g092810 vs. NCBI nr
Match: KAG6587675.1 (hypothetical protein SDJN03_16240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330 bits (846), Expect = 2.99e-114
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MILKMLMISIETLETEECVSIRIADNEHERVFLPLMMLKIWIRNAAGDDSDDVDEPRPKC 60
           MILKMLMISIETLETEECVSIRIADNEHERVFLPLMMLKIWIRNAAGDDSDDVDEPRPKC
Sbjct: 1   MILKMLMISIETLETEECVSIRIADNEHERVFLPLMMLKIWIRNAAGDDSDDVDEPRPKC 60

Query: 61  SERSGPGERQFGKGWRAGIGVHWRHLNSSSPPFCTLNAEFLLTQHNISFVQPCPQPGQIN 120
           SERSGPGERQFGKGWRAGIGVHWRHLNSSSPPFCTLNAEFLLTQHNISFVQPCPQPGQIN
Sbjct: 61  SERSGPGERQFGKGWRAGIGVHWRHLNSSSPPFCTLNAEFLLTQHNISFVQPCPQPGQIN 120

Query: 121 FLDKNSLCPTDNKGVTLKGQMFLGTAQPPFMASAIRNP 158
           FLDKNSLCPTDNKGVTLKGQMFLGTAQPPFMASAIRNP
Sbjct: 121 FLDKNSLCPTDNKGVTLKGQMFLGTAQPPFMASAIRNP 158

The following BLAST results are available for this feature:

BLAST of Csor.00g092810 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g092810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587675.1	2.99e-114	100.00	hypothetical protein SDJN03_16240, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g092810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g092810 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g092810.m01	Csor.00g092810.m01	mRNA