Csor.00g092050 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGACGAGAAAGATGATGGCGAATTTGTGCTGTCTTTGGATAATCTTCCATCCAGATGCTCGTCTTTGGGTTGCTCCTCTCGTTTGTACTACTACAGGCGAACCACTGAAGGGGTTCCCTTTCAGTGGGAGATGCAACCGGGGACCCCCAAGGATCCGCCATACACGGAGGCTGTTACGCTGCTGATCACTCCACCGCCGGCTGCGCTCAGCCTACGCCCGCCGAAGCCAGCAAGGACTCAGGGTAAACAATCGTTGTTTCTGTTGTTTAGGCCGTGGAGGAAGCAGTCCAAGTCCCAGAAGCATTCTTGTCTGTCGGATGAGTTTGAGGATGGACGGACGAGATTTGGGTCTTGTGGGTCCCAATGTGAGTTTATCCAATCACTATGCGAGCCAAAATCTTCTTCTTCTTCTTCTTCTTGGTCGTCGTTGCCGCCGGCGGAATCTTCCGCTCACCGGCGGTTGGGATGCGGTCCGTGGAGGATCAACCCACTAAGAATTGCTATTGGAAGGCGAGTTTGA ATGAAGGACGAGAAAGATGATGGCGAATTTGTGCTGTCTTTGGATAATCTTCCATCCAGATGCTCGTCTTTGGGTTGCTCCTCTCGTTTGTACTACTACAGGCGAACCACTGAAGGGGTTCCCTTTCAGTGGGAGATGCAACCGGGGACCCCCAAGGATCCGCCATACACGGAGGCTGTTACGCTGCTGATCACTCCACCGCCGGCTGCGCTCAGCCTACGCCCGCCGAAGCCAGCAAGGACTCAGGGTAAACAATCGTTGTTTCTGTTGTTTAGGCCGTGGAGGAAGCAGTCCAAGTCCCAGAAGCATTCTTGTCTGTCGGATGAGTTTGAGGATGGACGGACGAGATTTGGGTCTTGTGGGTCCCAATGTGAGTTTATCCAATCACTATGCGAGCCAAAATCTTCTTCTTCTTCTTCTTCTTGGTCGTCGTTGCCGCCGGCGGAATCTTCCGCTCACCGGCGGTTGGGATGCGGTCCGTGGAGGATCAACCCACTAAGAATTGCTATTGGAAGGCGAGTTTGA ATGAAGGACGAGAAAGATGATGGCGAATTTGTGCTGTCTTTGGATAATCTTCCATCCAGATGCTCGTCTTTGGGTTGCTCCTCTCGTTTGTACTACTACAGGCGAACCACTGAAGGGGTTCCCTTTCAGTGGGAGATGCAACCGGGGACCCCCAAGGATCCGCCATACACGGAGGCTGTTACGCTGCTGATCACTCCACCGCCGGCTGCGCTCAGCCTACGCCCGCCGAAGCCAGCAAGGACTCAGGGTAAACAATCGTTGTTTCTGTTGTTTAGGCCGTGGAGGAAGCAGTCCAAGTCCCAGAAGCATTCTTGTCTGTCGGATGAGTTTGAGGATGGACGGACGAGATTTGGGTCTTGTGGGTCCCAATGTGAGTTTATCCAATCACTATGCGAGCCAAAATCTTCTTCTTCTTCTTCTTCTTGGTCGTCGTTGCCGCCGGCGGAATCTTCCGCTCACCGGCGGTTGGGATGCGGTCCGTGGAGGATCAACCCACTAAGAATTGCTATTGGAAGGCGAGTTTGA MKDEKDDGEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKDPPYTEAVTLLITPPPAALSLRPPKPARTQGKQSLFLLFRPWRKQSKSQKHSCLSDEFEDGRTRFGSCGSQCEFIQSLCEPKSSSSSSSWSSLPPAESSAHRRLGCGPWRINPLRIAIGRRV Homology
BLAST of Csor.00g092050 vs. NCBI nr
Match: KAG6587751.1 (hypothetical protein SDJN03_16316, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 356 bits (913), Expect = 6.11e-124 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
BLAST of Csor.00g092050 vs. NCBI nr
Match: KAG7021722.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 354 bits (909), Expect = 4.43e-119 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Csor.00g092050 vs. NCBI nr
Match: XP_023530969.1 (uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 338 bits (868), Expect = 4.46e-117 Identity = 166/174 (95.40%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Csor.00g092050 vs. NCBI nr
Match: XP_022930189.1 (uncharacterized protein LOC111436686 [Cucurbita moschata]) HSP 1 Score: 337 bits (865), Expect = 1.23e-116 Identity = 168/174 (96.55%), Postives = 168/174 (96.55%), Query Frame = 0
BLAST of Csor.00g092050 vs. NCBI nr
Match: XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima]) HSP 1 Score: 337 bits (865), Expect = 1.23e-116 Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Csor.00g092050 vs. ExPASy TrEMBL
Match: A0A6J1KZJ1 (uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680 PE=4 SV=1) HSP 1 Score: 337 bits (865), Expect = 5.97e-117 Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Csor.00g092050 vs. ExPASy TrEMBL
Match: A0A6J1EQV3 (uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC111436686 PE=4 SV=1) HSP 1 Score: 337 bits (865), Expect = 5.97e-117 Identity = 168/174 (96.55%), Postives = 168/174 (96.55%), Query Frame = 0
BLAST of Csor.00g092050 vs. ExPASy TrEMBL
Match: A0A0A0LUL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1) HSP 1 Score: 174 bits (440), Expect = 2.82e-52 Identity = 105/181 (58.01%), Postives = 124/181 (68.51%), Query Frame = 0
BLAST of Csor.00g092050 vs. ExPASy TrEMBL
Match: A0A5D3CJV8 (Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00380 PE=4 SV=1) HSP 1 Score: 149 bits (376), Expect = 7.23e-43 Identity = 90/156 (57.69%), Postives = 106/156 (67.95%), Query Frame = 0
BLAST of Csor.00g092050 vs. ExPASy TrEMBL
Match: A0A7J9FFW4 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_001801 PE=4 SV=1) HSP 1 Score: 107 bits (268), Expect = 3.84e-26 Identity = 71/168 (42.26%), Postives = 94/168 (55.95%), Query Frame = 0
BLAST of Csor.00g092050 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 5.1e-08 Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0
BLAST of Csor.00g092050 vs. TAIR 10
Match: AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B ) HSP 1 Score: 51.6 bits (122), Expect = 7.4e-07 Identity = 54/162 (33.33%), Postives = 74/162 (45.68%), Query Frame = 0
BLAST of Csor.00g092050 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05 Identity = 30/90 (33.33%), Postives = 41/90 (45.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|