Csor.00g091790 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g091790
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Small nuclear ribonucleoprotein E
Location	Csor_Chr11: 2100500 .. 2104004 (-)
RNA-Seq Expression	Csor.00g091790
Synteny	Csor.00g091790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTGTACGTATTGAATCTATTCATCTCCCTTCCTTTGTTGCTTTTACTTGGGGCTGACTTTAAACTATTTCTGTGCTTTACTGATGGGTTCTGTATCTTTGTCTTTTCCCTCTCGATCCCGGTGCTTCTTTGGAACTAGAACTTGATATTCAGGTTTCTTCAAAGTGTAAGAAGTTACTCATCCATTCTTTTTTAAAAAAGCCATCGCACCTGGCTTTTCTGGTTTAATTTGGTCTTCTAATTCGAGTTTCAAATAAATGCAGAAAGCTCGCATTCAGATTTGGCTGTTTGAGCAAAAAGACCTTAGGATCGAGGGCCGAATTATTGTAAGGTTTTACTTTTTGCTGGTTTACTATTCTTTTTTTCTATATTGGCAATTAATGTAATATGAATTGAAAGCCTCTGTTTCCGTATATGTTGATCTCTTGTTGATAGTTTAATGGGTTTACTGCATTCTACTTTTCTTGTTGGCCTATGTTCATGATTTATAGATGCTCCAAATTCATAGTTGGATGTAATTTACTCTCCCACATGCTTCTTACAGAAATCCTGTGATTTTAGTGGAGAACAGGACATGAATGTGTTAAAAAGTTCTTAGATGTTTTGTGTGGTAACTCAAGCTAGTTGAATCTAAGGACTCTCATAAACGTTTTGGATATGCAAACTCCTAGTTTACACTCCAAAATCGAGTTGATTTCATTTCAAATGATTTGAGAATCAAATCACTACACAAGCAAGATTCATCAAGTCAAACTTGGATAATTCCAAGCATGTAGCCTAAACTACGTTGAATTTCAAAGAAACTTAGCTCTTAACTAAAAGAAACAATATTTTTCAAGTCTACTTTACAAAGACAACATACATGACTTTATATAACCTCAAAATCAAAATGAACTCTTGACCTTCCATGAGGTATTTCAAGAGTTGTAACCTTCATACTCTATGACATAATTAGCCACTATGTAAATGTAACCTTAAAGTAAATAAAAGTCTTAACATATATTAACGAAACACCGTTAACTCTATATTTTTGTTCACCCAAAATTTGTAACCATCTAAGAATAAACGAGGTTCTTCTTTCTTGAAGTTCATATTATATGATTGAGATGTGTTGGTTTATATCATCCTGACGAAGGACCTCAAGCTCCTACTCCACATTGTGAATCTGGGCAAAGTTTCTAGAGTTCAAACAAATTTGGTTGTGTAGGCGGTTTATTTGTTACTAGTTGAATTTGAACCTAATCCATGCCTCAAAATAAATTTGCATGACTTCAAGATTGTGCTTCAGTATTTTGATTGCATTTTACACTGCCATCGAGAGTTATGCAGGAAATTGGGCAAAATCTTGGACACAGCTTGAAATTGCTGCTTATGTGGCTATCACGCAGACTTGCTCTAGGAATGGGAATGGACCATAGTGTTATCATTTCTCCCCCCCCCCCCCAAAGAAAACCTCATTTCTTTGGGCACATAGATCATTGAATTTAAAGGGGAAAAAAAATAATTTCTTTGTTCAGATAGTGAATGTTTTTTTGCCTCTCAGTTTTAGATAGATCGAGTCTCTAATGAAAATATTTTTATGGTTAGAATGGTCCTTCAAGAGTTTGTATGGTATCAGCCTTACAATGGACGTGTTTAACTCAACAAAAGACAGCAAACAGCAAATACCCAAAAGAAAAAACTATTCTATTTATTAATTTCAGAAAACCTCACAAAACAGCCAAATTGGCAAAAACATTCAGCATAAAGGAAAATGTAAGCAGGCCGCCAGCTTATCTGAAATTTCCTGTTTCATCCTTCCTAGAATAAGTTTTCACAATGGAGGCATCGCATAGTCTTCATTTTTTGTTGAGCTTTGGTAGTTGAAATTTATGGTAATCATGGGTAGTGCATCTCTTTCCTCCAAAACTTAGCCAGTGCATGATGTAGTAGTTGTCTTCATCTTGTAATGTAATAAGTTAGAGGTGTGGGACATAGAGTTATATCTCAGTATTCTGTCCAATTGATCAAACTCTCTGATCGGAACTCTGTTTTCCCTGAAACCTCAAATAATTCTGAGCGCAATGGTCAATTACCTCTGTGATCTGCAGTATTCTGTATGAAATTGTTTCATCTTCTGTTGCTGGAGCAAATCTTGAATAGTACTTTTCTTAAGACATAGCCCCTTGCCTGGGAATTGATTTCCATCTGTCGACACCTACATGAAGTTAGTTTATTCTCCTGTTATTCTATTACTCAATTAAGCTTGATTCCTATCTATTTTGTGCGGGATTATCCTCATCAATTTATGAAATATTGTGACTTGTGCATCCTAAAACTTTTCCTACCACCAGGGGTTGAACGTTGTATTCAGAATTCAGTCAGCAAGTATTTTGGGTTCATTATTCCTCATGTGAACTAAGTGAATTTAGTCTTAGCGTCTTGACTTTTGATATGTTGAATTTGAATGCAGTAGCATATTTCATGTCCTATTCATCTACTTCTTTTCACGATTATTGCGATGTAATTCTTCTGAGATGCTTTTGTGCATCTATTGCTTCTAATTTCTAAGCTAGTAAAAGCTATAGCCATAGAGTTCAAAATGCACTTCGAAAAACATTGGGAGTGGTTCTACTGCTAGTAATCTCTTGTCTGGATCACTTTCTTTTGATATATTTCATTCTCTGGTTCAACAAGCTAACTAGGGAGTAACACTCTGCTGCAAAGATTGTGGTGTAATCTCAGTATCCTGCTTATCTTTTCATTTATTAGATCCATTGCTAGGATTGTCATTTTCATCGCTGAGTAGATATTTCCCTTGGCCTTGGGCTTCACTTTCCTCTCTTTTATAATTTCATACAGTCCATGAAACTGTTCCTTGCCGCAAAGAAATTGTTGTTTGGTCGTCTACTTTTTCCTAGTTTTCTATAATATATAGTTTGTAGTTTTCTCAACTATTAGCTCATATGACTCATTTTCTGTAATATACATGCAGTAATATGTTTATGATTATCTTGTACTAGAAAATTTTAATTTTGTTGTTTCATCGTTTGTTGTAATTACCTATGTTTTGGCTGACTAATTAATGTTATTGTTATAACTTATAAGGGAGGTGCAGTTAGAAGAAGCTGTTTCCTTTATATTGGTGTTATCTTTAAATTGATTATATTTTCTTGATCGTGCAGGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGTATGCCTTCTTCCCCCTCATTTGTTGTTGTCTCCTCTCTAATTCAATGGTTTTCTAAAATGCCTTCTTTGGTTTTTTTCTTTCCCCTTCAGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACACGTAAGTGAAATTGAACTTGCCCTTCCTCTCCCTTTCTCTTATCCCAGCTAACCTTTTTTTCCCTTCAAATTTCAGGGGAAAATGA

mRNA sequence

ATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGCATTCAGATTTGGCTGTTTGAGCAAAAAGACCTTAGGATCGAGGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACACGGGAAAATGA

Coding sequence (CDS)

ATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGCATTCAGATTTGGCTGTTTGAGCAAAAAGACCTTAGGATCGAGGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACACGGGAAAATGA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

Homology

[Close]

BLAST of Csor.00g091790 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Csor.00g091790 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Csor.00g091790 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Csor.00g091790 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Csor.00g091790 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Csor.00g091790 vs. NCBI nr
Match: XP_022135003.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972120.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023529379.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6587777.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (442), Expect = 7.08e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          NIKKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. NCBI nr
Match: XP_020227736.1 (small nuclear ribonucleoprotein E [Cajanus cajan])

HSP 1 Score: 174 bits (441), Expect = 1.01e-54
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          NIKKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. NCBI nr
Match: XP_003597961.1 (small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nuclear ribonucleoprotein E [Medicago truncatula] >XP_019463643.1 PREDICTED: small nuclear ribonucleoprotein E-like [Lupinus angustifolius] >AES68212.1 small nuclear ribonucleoprotein [Medicago truncatula] >AES98765.1 small nuclear ribonucleoprotein [Medicago truncatula] >AFK37227.1 unknown [Medicago truncatula] >RHN56601.1 putative small nuclear ribonucleoprotein E [Medicago truncatula] >RHN76562.1 putative small nuclear ribonucleoprotein E [Medicago truncatula])

HSP 1 Score: 174 bits (440), Expect = 1.43e-54
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          N+KKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. NCBI nr
Match: XP_003542280.1 (small nuclear ribonucleoprotein E [Glycine max] >XP_028196135.1 small nuclear ribonucleoprotein E-like [Glycine soja] >TKY73790.1 Small nuclear ribonucleoprotein E [Spatholobus suberectus] >ACU14300.1 unknown [Glycine max] >KAG4959061.1 hypothetical protein JHK87_035694 [Glycine soja] >KAG4970074.1 hypothetical protein JHK85_036495 [Glycine max] >KAG4976429.1 hypothetical protein JHK86_035903 [Glycine max])

HSP 1 Score: 173 bits (438), Expect = 2.89e-54
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          NIKKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. NCBI nr
Match: XP_022156313.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 small nuclear ribonucleoprotein E-like [Momordica charantia])

HSP 1 Score: 173 bits (438), Expect = 2.89e-54
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          N+KKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. ExPASy TrEMBL
Match: A0A6J1I7N4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE=3 SV=1)

HSP 1 Score: 174 bits (442), Expect = 3.43e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          NIKKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. ExPASy TrEMBL
Match: A0A6J1C3K6 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114 PE=3 SV=1)

HSP 1 Score: 174 bits (442), Expect = 3.43e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          NIKKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. ExPASy TrEMBL
Match: A0A6J1EQZ2 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 PE=3 SV=1)

HSP 1 Score: 174 bits (442), Expect = 3.43e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          NIKKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. ExPASy TrEMBL
Match: G7IMA2 (Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=2 SV=1)

HSP 1 Score: 174 bits (440), Expect = 6.92e-55
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          N+KKKSKKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. ExPASy TrEMBL
Match: A0A6J1DT21 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239 PE=3 SV=1)

HSP 1 Score: 173 bits (438), Expect = 1.40e-54
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 88
          N+KKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 160.2 bits (404), Expect = 7.4e-40
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 89
          +IKK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of Csor.00g091790 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 160.2 bits (404), Expect = 7.4e-40
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NIKKKSKKTLGRILLKGDNITLMMNTGK 89
          +IKKK++K LGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]

BLAST of Csor.00g091790 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.9 bits (320), Expect = 4.1e-30
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NIKKKSKKTLG 72
          +IKK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]

BLAST of Csor.00g091790 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKT--L 72
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  I  + ++   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 73 GRILLKGDNITLMMNTG 88
           +ILL G+NI +++  G
Sbjct: 70 DQILLNGNNIAILVPGG 82

The following BLAST results are available for this feature:

BLAST of Csor.00g091790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUI2	6.4e-28	71.60	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	6.4e-28	71.60	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	6.4e-28	71.60	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	6.4e-28	71.60	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]
A1XQR9	6.4e-28	71.60	Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1	[more]

BLAST of Csor.00g091790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135003.1	7.08e-55	100.00	small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 sma...	[more]
XP_020227736.1	1.01e-54	98.86	small nuclear ribonucleoprotein E [Cajanus cajan]	[more]
XP_003597961.1	1.43e-54	97.73	small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nu...	[more]
XP_003542280.1	2.89e-54	97.73	small nuclear ribonucleoprotein E [Glycine max] >XP_028196135.1 small nuclear ri...	[more]
XP_022156313.1	2.89e-54	97.73	small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 sma...	[more]

BLAST of Csor.00g091790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7N4	3.43e-55	100.00	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE...	[more]
A0A6J1C3K6	3.43e-55	100.00	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114...	[more]
A0A6J1EQZ2	3.43e-55	100.00	Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 ...	[more]
G7IMA2	6.92e-55	97.73	Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=...	[more]
A0A6J1DT21	1.40e-54	97.73	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239...	[more]

BLAST of Csor.00g091790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18740.1	7.4e-40	92.05	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	7.4e-40	92.05	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	4.1e-30	90.14	Small nuclear ribonucleoprotein family protein	[more]
AT5G48870.1	1.6e-05	36.36	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..88
None	No IPR available	GENE3D	2.30.30.100		coord: 1..86 e-value: 5.0E-42 score: 143.6
None	No IPR available	PANTHER	PTHR11193:SF10	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..87
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 19..85 e-value: 5.3E-18 score: 75.8
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 20..83 e-value: 3.8E-18 score: 65.0
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..87
IPR027078	Small nuclear ribonucleoprotein E	CDD	cd01718	Sm_E	coord: 7..85 e-value: 8.18413E-51 score: 152.323
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 12..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g091790.m01	Csor.00g091790.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding