Csor.00g090990 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g090990
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RNF12-A-like isoform X1
Location	Csor_Chr11: 2424450 .. 2426071 (-)
RNA-Seq Expression	Csor.00g090990
Synteny	Csor.00g090990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGGTCATTAAATCCTCTTCTTCTTCATCATCATCGAATCTTTTGTTCTCTCTTCTTCACCCATTTCTTCCCATTATTCCTGAACTTTACTCTAATTCCTCCTTCGAATCTTGTTTCAAAAATCTGGGGTTCCATATCTTCCTCTCAAAGATTGACCCTGAGTAGCATCTTTTATTACGAGCTGTTTATTGCTTTCCTTTGATTCAAGTGTTTATTGCTTTCCTTTGAGCTCTGAATTGGGTTTCGGAATAGTTTTGATCGGAGTATCCCCCGGAATTAGGTCTGAACGGCTCTAGCTTTTGCAATATGTTTCTGTTTGTTTGCTATTTGTTTTGCTTGCGTTTTTGTTGATTGTTGATGGGTAATGATCACTATCCGATTGCTTGGTGATTTTGAATCTTCAATTTGTATGTTATAATCAGTTTCTTACCATCTAAGTTTGCCTTTTGCTCATGTTTTGAATCTTGGATTTCAATAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTTACATTCTGAATGTTAACAATTATGATCAGTCTTCCATTGTGTTTATACATCATTGCTTCTCAATTAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAAACTCTACCTTGCCCATCAGGCATTCATCCTAA

mRNA sequence

ATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAAACTCTACCTTGCCCATCAGGCATTCATCCTAA

Coding sequence (CDS)

ATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAAACTCTACCTTGCCCATCAGGCATTCATCCTAA

Protein sequence

MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCNHNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNVLSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLPIRHSS

Homology

[Close]

BLAST of Csor.00g090990 vs. NCBI nr
Match: KAG6587857.1 (hypothetical protein SDJN03_16422, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 697 bits (1798), Expect = 1.08e-252
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLPIRHSS 358
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLPIRHSS
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLPIRHSS 358

[Close]

BLAST of Csor.00g090990 vs. NCBI nr
Match: KAG7021745.1 (E3 ubiquitin-protein ligase-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 680 bits (1754), Expect = 1.13e-243
Identity = 351/353 (99.43%), Postives = 351/353 (99.43%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQ  TLP
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQ--TLP 351

[Close]

BLAST of Csor.00g090990 vs. NCBI nr
Match: XP_022932117.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 664 bits (1713), Expect = 1.96e-237
Identity = 343/353 (97.17%), Postives = 346/353 (98.02%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVC KVMFAASSSTTQEIGDSCS+ELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCMKVMFAASSSTTQEIGDSCSDELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAY+NPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYQNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSN+FSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNSFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQN   P
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCP 353

[Close]

BLAST of Csor.00g090990 vs. NCBI nr
Match: XP_023001605.1 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 662 bits (1707), Expect = 1.61e-236
Identity = 342/353 (96.88%), Postives = 344/353 (97.45%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRV  NKELAPLPQVSAD
Sbjct: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVYDNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVCTKVMFAASSSTTQE+GDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCTKVMFAASSSTTQEVGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSES PCRPDLSLT +SLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESLPCRPDLSLTIESLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQN   P
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCP 353

[Close]

BLAST of Csor.00g090990 vs. NCBI nr
Match: XP_023530449.1 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 661 bits (1706), Expect = 2.28e-236
Identity = 339/353 (96.03%), Postives = 343/353 (97.17%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQME+SMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEESMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQS YS+NDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSVYSDNDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVCTK MFAASSSTTQE+GDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCTKAMFAASSSTTQEVGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSESSPC PDLS TFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESSPCHPDLSFTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLD+SG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDLSG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQN   P
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCP 353

[Close]

BLAST of Csor.00g090990 vs. ExPASy TrEMBL
Match: A0A6J1EVR4 (E3 ubiquitin-protein ligase RNF12-B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438424 PE=4 SV=1)

HSP 1 Score: 664 bits (1713), Expect = 9.50e-238
Identity = 343/353 (97.17%), Postives = 346/353 (98.02%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVC KVMFAASSSTTQEIGDSCS+ELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCMKVMFAASSSTTQEIGDSCSDELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAY+NPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYQNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSN+FSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNSFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQN   P
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCP 353

[Close]

BLAST of Csor.00g090990 vs. ExPASy TrEMBL
Match: A0A6J1KLN3 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495681 PE=4 SV=1)

HSP 1 Score: 662 bits (1707), Expect = 7.78e-237
Identity = 342/353 (96.88%), Postives = 344/353 (97.45%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRV  NKELAPLPQVSAD
Sbjct: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVYDNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVCTKVMFAASSSTTQE+GDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCTKVMFAASSSTTQEVGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSES PCRPDLSLT +SLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESLPCRPDLSLTIESLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQN   P
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCP 353

[Close]

BLAST of Csor.00g090990 vs. ExPASy TrEMBL
Match: A0A6J1EVS0 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438424 PE=4 SV=1)

HSP 1 Score: 655 bits (1691), Expect = 1.97e-234
Identity = 341/353 (96.60%), Postives = 344/353 (97.45%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVC KVMFAASSSTTQEIGDSCS+ELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCMKVMFAASSSTTQEIGDSCSDELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAY+NPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYQNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSN+FSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNSFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQ  LWERIRSSLSENSRQN   P
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQ--LWERIRSSLSENSRQNLPCP 351

[Close]

BLAST of Csor.00g090990 vs. ExPASy TrEMBL
Match: A0A6J1KH21 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495681 PE=4 SV=1)

HSP 1 Score: 653 bits (1685), Expect = 1.61e-233
Identity = 340/353 (96.32%), Postives = 342/353 (96.88%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRV  NKELAPLPQVSAD
Sbjct: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVYDNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVCTKVMFAASSSTTQE+GDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCTKVMFAASSSTTQEVGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSES PCRPDLSLT +SLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESLPCRPDLSLTIESLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNSTLP 353
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQ  LWERIRSSLSENSRQN   P
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQ--LWERIRSSLSENSRQNLPCP 351

[Close]

BLAST of Csor.00g090990 vs. ExPASy TrEMBL
Match: A0A6J1KJ55 (E3 ubiquitin-protein ligase RNF12-A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111495681 PE=4 SV=1)

HSP 1 Score: 585 bits (1508), Expect = 3.38e-207
Identity = 302/312 (96.79%), Postives = 304/312 (97.44%), Query Frame = 0


Query: 42  MEDSMVQFLVHPVEHQHCNHNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVH 101
           MEDSMVQFLVHPVEHQHCNHNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVH
Sbjct: 1   MEDSMVQFLVHPVEHQHCNHNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVH 60

Query: 102 GKRVSHNKELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQ 161
           GKRV  NKELAPLPQVSADYSHEESRSYSNASNGTS KGHQSSEPVCTKVMFAASSSTTQ
Sbjct: 61  GKRVYDNKELAPLPQVSADYSHEESRSYSNASNGTSCKGHQSSEPVCTKVMFAASSSTTQ 120

Query: 162 EIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVS 221
           E+GDSCSNELTGCIQEDEATAYRNPDSES PCRPDLSLT +SLGDESLQEVPSSLDTLVS
Sbjct: 121 EVGDSCSNELTGCIQEDEATAYRNPDSESLPCRPDLSLTIESLGDESLQEVPSSLDTLVS 180

Query: 222 DDREVGQGDVDMVGVSSNVLSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFP 281
           DDREVGQGDVDMVGVSSNVLSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFP
Sbjct: 181 DDREVGQGDVDMVGVSSNVLSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFP 240

Query: 282 SNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSS 341
           SNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSS
Sbjct: 241 SNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSS 300

Query: 342 LSENSRQNSTLP 353
           LSENSRQN   P
Sbjct: 301 LSENSRQNLPCP 312

The following BLAST results are available for this feature:

BLAST of Csor.00g090990 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g090990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587857.1	1.08e-252	100.00	hypothetical protein SDJN03_16422, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021745.1	1.13e-243	99.43	E3 ubiquitin-protein ligase-like protein [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022932117.1	1.96e-237	97.17	E3 ubiquitin-protein ligase RNF12-B-like isoform X1 [Cucurbita moschata]	[more]
XP_023001605.1	1.61e-236	96.88	E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita maxima]	[more]
XP_023530449.1	2.28e-236	96.03	E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g090990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVR4	9.50e-238	97.17	E3 ubiquitin-protein ligase RNF12-B-like isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1KLN3	7.78e-237	96.88	E3 ubiquitin-protein ligase RNF12-A-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1EVS0	1.97e-234	96.60	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1KH21	1.61e-233	96.32	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1KJ55	3.38e-207	96.79	E3 ubiquitin-protein ligase RNF12-A-like isoform X3 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Csor.00g090990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..145
None	No IPR available	PANTHER	PTHR47168	RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED	coord: 1..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g090990.m01	Csor.00g090990.m01	mRNA