Csor.00g090400 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g090400
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
LocationCsor_Chr11: 2760666 .. 2761197 (+)
RNA-Seq ExpressionCsor.00g090400
SyntenyCsor.00g090400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACACTTACAACAACACGGAGGCGTTGGCTGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTGGTGCGTTTAAGTCCGCCTATCCTTCTGACTGTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGGTACGCACACTCAACAATCTGCATTAGTTTCACCTACACAACACTTCAAATTCCTTACCCAAAACCGTAATGTTGTGTTCTACAGAATGGGATGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTAAGTTCATATCAATTACAATATTTGATGCTGTAGCTCAGTTGGGTCTGTAA

mRNA sequence

ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACACTTACAACAACACGGAGGCGTTGGCTGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTGGTGCGTTTAAGTCCGCCTATCCTTCTGACTGTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGAATGGGATGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTAAGTTCATATCAATTACAATATTTGATGCTGTAGCTCAGTTGGGTCTGTAA

Coding sequence (CDS)

ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACACTTACAACAACACGGAGGCGTTGGCTGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTGGTGCGTTTAAGTCCGCCTATCCTTCTGACTGTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGAATGGGATGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTAAGTTCATATCAATTACAATATTTGATGCTGTAGCTCAGTTGGGTCTGTAA

Protein sequence

MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFGKFISITIFDAVAQLGL
Homology
[Close]
BLAST of Csor.00g090400 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-07
Identity = 39/137 (28.47%), Postives = 64/137 (46.72%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDW-YCTTLTCGAHNY 65
           GDW C  C   NF++R +C RC++P  G    S  T +NT   + D+ Y  +   G+ ++
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFRCSFP--GPTHVSAATGSNT--FSPDFPYGNSYGNGSSHF 404

Query: 66  ASRPNCFKCGAFKSAYPSDCAAYQYGSDA------------TIPPGWKSGDWICPRMGCG 125
            +        + ++   SD   +Q G++A             +P  +++GDW C   GCG
Sbjct: 405 IANYGGSVHHSNENTMQSD-LQHQNGNNAVNHHHSSRSFGGNVP--FRAGDWKCGSEGCG 464

Query: 126 VHNYASRTECFKCKTPR 130
            HN+A    C +C   R
Sbjct: 465 YHNFAKNVCCLRCGASR 474

[Close]
BLAST of Csor.00g090400 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 28/84 (33.33%), Postives = 38/84 (45.24%), Query Frame = 0 

Query: 50  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPG----WKSGDWI 109
           GDW C    CG  N+A R +C +CG  K+       A       T+       + + DW 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 110 CPRMGCGVHNYASRTECFKCKTPR 130
           C    CG  N+A R+EC  C TP+
Sbjct: 71  CKT--CGNVNWARRSECNMCNTPK 92

[Close]
BLAST of Csor.00g090400 vs. ExPASy Swiss-Prot
Match: Q01844 (RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-05
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 100 KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG 133
           ++GDW CP  GCG  N+A RTEC +CK P+  G
Sbjct: 518 RAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEG 550

[Close]
BLAST of Csor.00g090400 vs. ExPASy Swiss-Prot
Match: Q61545 (RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-05
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 100 KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG 133
           ++GDW CP  GCG  N+A RTEC +CK P+  G
Sbjct: 517 RAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEG 549

[Close]
BLAST of Csor.00g090400 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 27/84 (32.14%), Postives = 37/84 (44.05%), Query Frame = 0 

Query: 50  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPG----WKSGDWI 109
           GDW C    CG  N+A R +C +CG  K+       A       T+       + + DW 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 110 CPRMGCGVHNYASRTECFKCKTPR 130
           C    C   N+A R+EC  C TP+
Sbjct: 71  CKT--CSNVNWARRSECNMCNTPK 92

[Close]
BLAST of Csor.00g090400 vs. NCBI nr
Match: KAG6587916.1 (hypothetical protein SDJN03_16481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340 bits (872), Expect = 1.51e-118
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148
           ECFKCKTPRDFGKFISITIFDAVAQLGL
Sbjct: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148

[Close]
BLAST of Csor.00g090400 vs. NCBI nr
Match: XP_022931677.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 338 bits (866), Expect = 1.24e-117
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYTNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148
           ECFKCKTPRDFGKFISITIFDAVAQLGL
Sbjct: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148

[Close]
BLAST of Csor.00g090400 vs. NCBI nr
Match: XP_023006418.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 337 bits (863), Expect = 3.56e-117
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTCNNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148
           ECFKCKTPRDFGKFISITIFDAVAQLGL
Sbjct: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148

[Close]
BLAST of Csor.00g090400 vs. NCBI nr
Match: XP_023530996.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332 bits (850), Expect = 3.43e-115
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEAL GDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALPGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYP  CAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASR 
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPPHCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRA 120

Query: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148
           ECFKCKTPRDFGKFISITIFDAVAQLGL
Sbjct: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148

[Close]
BLAST of Csor.00g090400 vs. NCBI nr
Match: XP_022931684.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 308 bits (790), Expect = 3.13e-106
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYTNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFG 132
           ECFKCKTPRDFG
Sbjct: 121 ECFKCKTPRDFG 132

[Close]
BLAST of Csor.00g090400 vs. ExPASy TrEMBL
Match: A0A6J1EUC5 (zinc finger Ran-binding domain-containing protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437828 PE=4 SV=1)

HSP 1 Score: 338 bits (866), Expect = 6.02e-118
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYTNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148
           ECFKCKTPRDFGKFISITIFDAVAQLGL
Sbjct: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148

[Close]
BLAST of Csor.00g090400 vs. ExPASy TrEMBL
Match: A0A6J1L4V4 (zinc finger Ran-binding domain-containing protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499143 PE=4 SV=1)

HSP 1 Score: 337 bits (863), Expect = 1.73e-117
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTCNNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148
           ECFKCKTPRDFGKFISITIFDAVAQLGL
Sbjct: 121 ECFKCKTPRDFGKFISITIFDAVAQLGL 148

[Close]
BLAST of Csor.00g090400 vs. ExPASy TrEMBL
Match: A0A6J1EUY0 (zinc finger Ran-binding domain-containing protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437828 PE=4 SV=1)

HSP 1 Score: 308 bits (790), Expect = 1.51e-106
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYTNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFG 132
           ECFKCKTPRDFG
Sbjct: 121 ECFKCKTPRDFG 132

[Close]
BLAST of Csor.00g090400 vs. ExPASy TrEMBL
Match: A0A6J1KXP9 (zinc finger Ran-binding domain-containing protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499143 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 4.35e-106
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTCNNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFG 132
           ECFKCKTPRDFG
Sbjct: 121 ECFKCKTPRDFG 132

[Close]
BLAST of Csor.00g090400 vs. ExPASy TrEMBL
Match: A0A5D3E0T0 (Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00450 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 3.49e-95
Identity = 118/137 (86.13%), Postives = 124/137 (90.51%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWS+GDWICN CQNVNFKKREACHRC YPKYGGPDPSTY+YN TEALAGDWYCTT++CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAY-----QYGSDATIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCF+CGAFKS YP D  AY     QYGSDA+IPPGWKSGDWICPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRTECFKCKTPRDFG 132
           YASR ECFKCKTPRDFG
Sbjct: 121 YASRMECFKCKTPRDFG 137

[Close]
BLAST of Csor.00g090400 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-55
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSW+ GDW+C ACQ+ NFKKRE+C +C YPK+GG D STY YN TE +AGDWYC  L CG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQ---YGSD-ATIPPGWKSGDWICPRMGCGVHNY 120
           +HNYASR +C++CG  K  Y       Q   YG+D A  PPGWK+GDW+CPR+GCGVHNY
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRVGCGVHNY 120

Query: 121 ASRTECFKCKTPRDFG 133
           ASR ECFKCKT RD+G
Sbjct: 121 ASRAECFKCKTTRDYG 136

[Close]
BLAST of Csor.00g090400 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 62/154 (40.26%), Postives = 80/154 (51.95%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCA-------------YPKYGGPDPSTYTY-NNTEALAGD 65
           GDW C +C ++NF++R++C RC              +  +GG   S + +   ++   GD
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64

Query: 66  WYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIP--------PG----- 125
           WYCT   CG HN+ASR  CFKCG FK    +       G  A           PG     
Sbjct: 65  WYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGGRS 124

Query: 126 -WKSGDWICPRMGCGVHNYASRTECFKCKTPRDF 132
            WKSGDWIC R+GC  HN+ASR ECF+C  PRDF
Sbjct: 125 SWKSGDWICTRIGCNEHNFASRMECFRCNAPRDF 158

[Close]
BLAST of Csor.00g090400 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 62/159 (38.99%), Postives = 83/159 (52.20%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCAYPKYGG------------PDPSTYTYN-NTEALAGDW 65
           GDW C  C ++NF++R++C RC  P+ GG            P  S++ +N   +   GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 66  YCTTLTCGAHNYASRPNCFKCGAFKSAYPSDCAAYQYG-SDATIPP-------------- 125
           YC    CG HN+A+R +CFKCGA K  +    AA   G  D  + P              
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

Query: 126 ------GWKSGDWICPRMGCGVHNYASRTECFKCKTPRD 131
                  WKSGDWICPR GC  HN+ASR+ECF+C  P++
Sbjct: 125 GGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]
BLAST of Csor.00g090400 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 81.6 bits (200), Expect = 5.7e-16
Identity = 50/149 (33.56%), Postives = 65/149 (43.62%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYA 65
           GDW C  C+N N+  R  C+RC  P+    D +T   +      GDW CT   C  +NYA
Sbjct: 7   GDWECLGCRNRNYAFRSFCNRCKQPRL-IMDNNTSPNSKWLPRIGDWICT--GCTNNNYA 66

Query: 66  SRPNCFKCGAFKSA----------------------------YPSDCAAYQYGSD-ATIP 125
           SR  C KCG  K                               P    A+   ++ A++ 
Sbjct: 67  SREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNATNQASVH 126

[Close]
BLAST of Csor.00g090400 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-07
Identity = 27/68 (39.71%), Postives = 35/68 (51.47%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYA 65
           GDW+C  C  +NF + ++C +C   K  GP   T   N  E   GDW CT   CG  N+A
Sbjct: 338 GDWLCPECSFLNFTRNQSCLKC---KAKGP-KKTSMVNIVEMKKGDWNCT--GCGYMNFA 397

Query: 66  SRPNCFKC 74
           S   C +C
Sbjct: 398 SNKQCREC 399

The following BLAST results are available for this feature:
BLAST of Csor.00g090400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O138016.1e-0728.47Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra... [more]
Q5ZLX53.4e-0533.33Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=... [more]
Q018444.4e-0554.55RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1[more]
Q615454.4e-0554.55RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2[more]
O952181.7e-0432.14Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z... [more]
BLAST of Csor.00g090400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587916.11.51e-118100.00hypothetical protein SDJN03_16481, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022931677.11.24e-11799.32zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita m... [more]
XP_023006418.13.56e-11799.32zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita m... [more]
XP_023530996.13.43e-11597.30zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita p... [more]
XP_022931684.13.13e-10699.24zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita m... [more]
BLAST of Csor.00g090400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EUC56.02e-11899.32zinc finger Ran-binding domain-containing protein 2-like isoform X1 OS=Cucurbita... [more]
A0A6J1L4V41.73e-11799.32zinc finger Ran-binding domain-containing protein 2-like isoform X2 OS=Cucurbita... [more]
A0A6J1EUY01.51e-10699.24zinc finger Ran-binding domain-containing protein 2-like isoform X2 OS=Cucurbita... [more]
A0A6J1KXP94.35e-10699.24zinc finger Ran-binding domain-containing protein 2-like isoform X1 OS=Cucurbita... [more]
A0A5D3E0T03.49e-9586.13Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis m... [more]
BLAST of Csor.00g090400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G26695.13.6e-5563.97Ran BP2/NZF zinc finger-like superfamily protein [more]
AT3G15680.11.1e-3040.26Ran BP2/NZF zinc finger-like superfamily protein [more]
AT5G25490.11.1e-3038.99Ran BP2/NZF zinc finger-like superfamily protein [more]
AT2G17975.15.7e-1633.56zinc finger (Ran-binding) family protein [more]
AT1G48570.13.7e-0739.71zinc finger (Ran-binding) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 50..76
e-value: 1.8E-4
score: 30.8
coord: 6..30
e-value: 2.1E-4
score: 30.7
coord: 102..128
e-value: 9.0E-9
score: 45.1
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 49..77
e-value: 1.0E-5
score: 24.7
coord: 100..129
e-value: 3.8E-9
score: 35.7
coord: 5..31
e-value: 5.7E-6
score: 25.5
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 104..125
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 8..27
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 52..73
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 48..79
score: 9.145193
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 100..131
score: 10.240537
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 4..33
score: 9.088732
NoneNo IPR availableGENE3D4.10.1060.10coord: 40..81
e-value: 1.2E-10
score: 42.4
coord: 94..131
e-value: 3.7E-14
score: 53.7
coord: 1..35
e-value: 1.4E-10
score: 42.2
NoneNo IPR availablePANTHERPTHR23111:SF41ZINC FINGER, RANBP2-TYPE-RELATEDcoord: 1..134
NoneNo IPR availablePANTHERPTHR23111ZINC FINGER PROTEINcoord: 1..134
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 44..78
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 96..132
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 2..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g090400.m01Csor.00g090400.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding