Csor.00g087870 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g087870
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 6994105 .. 6994981 (+)
RNA-Seq ExpressionCsor.00g087870
SyntenyCsor.00g087870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternal
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGCCGGGTGGACCAAGCGGTACAGGCAGCCCTTGCTGGTCTTGGAAGCCAGGCGGCTCCAGCAGCACCTGTATCGGGCCAGACGACATTAGTGTCTGAAGCACCAGGAGTAGGTGTTCAGACAGTAATACCTTCAACACGGTTGATGGAGCTACCTGGTACAGCTGTGGTGACAGAGGCACCATCGCGGGTAGTAACTTATGGCCGACGATGTATGACAGAGGAGAGTGAGTACATACGAGATTTCATGAAACTTGCCCCGCCAACTTTTGGAGGAAAAGGGACTGATCCTGAGGCAGCTGAATGGTGGTTGGAATGTATTGAAACAAAGTTTACATTCTACAACTGCCCAGAGAATCATAAAGTGTTGTGTGCTACATATTTGTTGGAGGGACCAGCCCATTTTTGGTGGAAATCAAAGAAGCCGAAGATGGAGGCTGGTGGGGCCCCAATCACCTGGGCAGCCTTCAGACATGAGTTTTGTGAGAAATATTATCCTGCTCTAGCGAGATTGCGAAACCGAAAAGCATTTATGCAATTGGAACAGGGTAATAGGTCAGTAGAGGAGTATGAGGCGGAATTCACACGATTATCCAGATTTGTTCCTCTTATGGTTGCTAGTGAGGAAGAGAAGACGGATCTCTTTATTCAGGGTTTGAGGCAAGAGATACAGGGATCCGTGTCTGCCCATGCTTCTCAAGATTTTGTTACGGCTTATAATGCTGCGGTGCAATTAGATGCTAGCACCCCGAGGAATAATCAGGGTTCTAGCAGTCAGGTACGACCAAGTGGTAAACGAAAATTTATTCAAATATCCACGGGTTCGCAACAGCAGACGGTACCACAACGAGTTGATCGTCGGCCTTATTCAG

mRNA sequence

ATGCAGAGCCGGGTGGACCAAGCGGTACAGGCAGCCCTTGCTGGTCTTGGAAGCCAGGCGGCTCCAGCAGCACCTGTATCGGGCCAGACGACATTAGTGTCTGAAGCACCAGGAGTAGGTGTTCAGACAGTAATACCTTCAACACGGTTGATGGAGCTACCTGGTACAGCTGTGGTGACAGAGGCACCATCGCGGATGCTAGCACCCCGAGGAATAATCAGGGTTCTAGCAGTCAGGTACGACCAAGTGGTAAACGAAAATTTATTCAAATATCCACGGGTTCGCAACAGCAGACGGTACCACAACGAGTTGATCGTCGGCCTTATTCAG

Coding sequence (CDS)

ATGCAGAGCCGGGTGGACCAAGCGGTACAGGCAGCCCTTGCTGGTCTTGGAAGCCAGGCGGCTCCAGCAGCACCTGTATCGGGCCAGACGACATTAGTGTCTGAAGCACCAGGAGTAGGTGTTCAGACAGTAATACCTTCAACACGGTTGATGGAGCTACCTGGTACAGCTGTGGTGACAGAGGCACCATCGCGGATGCTAGCACCCCGAGGAATAATCAGGGTTCTAGCAGTCAGGTACGACCAAGTGGTAAACGAAAATTTATTCAAATATCCACGGGTTCGCAACAGCAGACGGTACCACAACGAGTTGATCGTCGGCCTTATTCAG

Protein sequence

MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVTEAPSRMLAPRGIIRVLAVRYDQVVNENLFKYPRVRNSRRYHNELIVGLIQ
Homology
[Close]
BLAST of Csor.00g087870 vs. NCBI nr
Match: KAG6590336.1 (hypothetical protein SDJN03_15759, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (526), Expect = 5.37e-67
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVT 60
           MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVT
Sbjct: 1   MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVT 60

Query: 61  EAPSRMLAPRGIIRVLAVRYDQVVNENLFKYPRVRNSRRYHNELIVGLIQ 110
           EAPSRMLAPRGIIRVLAVRYDQVVNENLFKYPRVRNSRRYHNELIVGLIQ
Sbjct: 61  EAPSRMLAPRGIIRVLAVRYDQVVNENLFKYPRVRNSRRYHNELIVGLIQ 110

[Close]
BLAST of Csor.00g087870 vs. NCBI nr
Match: KAG6571292.1 (hypothetical protein SDJN03_30207, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (502), Expect = 2.88e-62
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVT 60
           MQSRVDQAVQAALAGLGSQAAP APVSGQTTLVSEAPGVGVQTVIP TRL ELPGTAVVT
Sbjct: 66  MQSRVDQAVQAALAGLGSQAAPTAPVSGQTTLVSEAPGVGVQTVIPPTRLTELPGTAVVT 125

Query: 61  EAPSRMLAPRGIIRVLAVRYDQVVNENLFKYPRVRNSRRYHNELIVGLIQ 110
           EAPSRMLAPRG+IRVLAVRYDQVVNENLFKYP VRNSRRYHNELIVGLIQ
Sbjct: 126 EAPSRMLAPRGLIRVLAVRYDQVVNENLFKYPGVRNSRRYHNELIVGLIQ 175

[Close]
BLAST of Csor.00g087870 vs. NCBI nr
Match: KAG6585968.1 (hypothetical protein SDJN03_18701, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (502), Expect = 4.36e-62
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVT 60
           MQSRVDQAVQAALAGLGSQAAP APVSGQTTLVSEAPGVGVQTVIP TRL ELPGTAVVT
Sbjct: 66  MQSRVDQAVQAALAGLGSQAAPTAPVSGQTTLVSEAPGVGVQTVIPPTRLTELPGTAVVT 125

Query: 61  EAPSRMLAPRGIIRVLAVRYDQVVNENLFKYPRVRNSRRYHNELIVGLIQ 110
           EAPSRMLAPRGIIRVLAVRY+QVVNENLFKYPR RNSRRYHNELIVGLIQ
Sbjct: 126 EAPSRMLAPRGIIRVLAVRYNQVVNENLFKYPRARNSRRYHNELIVGLIQ 175

[Close]
BLAST of Csor.00g087870 vs. NCBI nr
Match: KAG6571796.1 (hypothetical protein SDJN03_28524, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (474), Expect = 6.13e-58
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 0 

Query: 1   MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVT 60
           MQSRVDQAVQAALAGLGSQAAP APVSGQTTLVSE P VGVQTV P TRL ELPGTAVVT
Sbjct: 71  MQSRVDQAVQAALAGLGSQAAPTAPVSGQTTLVSETPEVGVQTVTPPTRLTELPGTAVVT 130

Query: 61  EAPSRMLAPRGIIRVLAVRYDQVVNENLFKYPRVRNSRRYHNELIVGLI 109
           EAPSRMLAPRGIIRVLAVRY QVVNENLFKYPRVRNSR+YHNELI GLI
Sbjct: 131 EAPSRMLAPRGIIRVLAVRYGQVVNENLFKYPRVRNSRQYHNELIAGLI 179

[Close]
BLAST of Csor.00g087870 vs. NCBI nr
Match: XP_023521106.1 (uncharacterized protein LOC111784731 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106 bits (265), Expect = 2.31e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 1   MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELPGTAVVT 60
           +QSRVDQAVQAALAGLGSQAAP APVSGQTTLVS+APGVGVQTVIP TRL ELPGTAVVT
Sbjct: 66  VQSRVDQAVQAALAGLGSQAAPTAPVSGQTTLVSKAPGVGVQTVIPPTRLTELPGTAVVT 125

Query: 61  EAPSRML 67
           EA SR++
Sbjct: 126 EASSRVV 132

[Close]
BLAST of Csor.00g087870 vs. ExPASy TrEMBL
Match: A0A6J1EQX1 (uncharacterized protein LOC111436980 OS=Cucurbita moschata OX=3662 GN=LOC111436980 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.77e-20
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MQSRVDQAVQAALAGLGSQAAPAAPVSGQTTLVSEAPGVGVQTVIPSTRLMELP 54
          MQSRVDQAVQAALAGLGSQAAP APV GQTTLVSEAPGVGVQTVIP TRL ELP
Sbjct: 1  MQSRVDQAVQAALAGLGSQAAPTAPVLGQTTLVSEAPGVGVQTVIPPTRLTELP 54

The following BLAST results are available for this feature:
BLAST of Csor.00g087870 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g087870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6590336.15.37e-67100.00hypothetical protein SDJN03_15759, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571292.12.88e-6295.45hypothetical protein SDJN03_30207, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585968.14.36e-6295.45hypothetical protein SDJN03_18701, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571796.16.13e-5891.74hypothetical protein SDJN03_28524, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023521106.12.31e-2688.06uncharacterized protein LOC111784731 [Cucurbita pepo subsp. pepo][more]
BLAST of Csor.00g087870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EQX17.77e-2092.59uncharacterized protein LOC111436980 OS=Cucurbita moschata OX=3662 GN=LOC1114369... [more]
BLAST of Csor.00g087870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g087870.m01Csor.00g087870.m01mRNA