Csor.00g087840 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g087840
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr10: 10343222 .. 10345318 (+)
RNA-Seq Expression	Csor.00g087840
Synteny	Csor.00g087840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCTAGCGTTAGAACCAGAGTCCAAGTCTAAAACCGAGTCAAAGTCTGAGTACAACTCTTCCTTGTATCAGTCTGAGTCTGCTAGTGAATCTCCTTTTAAAGAGGTGATCAACCTCTTCTTCCTTTTATCCTTTGAACAAGGTCTCTCATTAAGCAAATATTGGGTGGGCTACAGCCTCTTTTTTTTCTTTTCCGAACAAGCTACAACTTTTGAATCGAAGCCAGATCACTCTTTCTAAAGAAAGAGAATAAAGCCAGATCACTCTTTCTAAAGAAAGAGAATAAAATCAGATCACTCTTTCTAAAGAAAGAGAATAAAATCAGATTATGAGAATGAAATCTTCGTCTTCCGGAATTCTCTTTTCTAAGTGCCGCGCTTATTCAATGCCAAACCAATGAAAAGAGTCGTCCTAGTCCACCACAGCTGAATGCGTACGCCGACAGAGAAGGAAAGAAAGCAAAATGACTTGCTTCAGCTGAAGAAAGGAATGTCCCATGACTCAGGCATGAGCTTGCTGCGGATTCGGCGATAAGAACTGACTCGGCAACAACGAGGTTTTAAATCAGTCTTTGATCTTGCAATTTCATTTCAAGTAGTGCTTGAGAGAGGAAATGGCAAAGCCAAGAACCAAGCTGATTGAATGAATGAAAGCTAACAATTTCATTGCCCCACAGCCTGAATGTGTGCTTCCCGCTCCAAATCTGGGTGACTGAATTTCCTGTGCCCTATTCACTCTCTTCCTTCTCATTCATTGATCTAAACCAACTCTTACTTGAAAGGACAGTTAGTTGAATTAATAAGGTGCTCCAACTCAAAATAGAACATTCCTTTCGCAACGCAGGCCGATATCTTTCAACCAAGGATGAGTTCGATCCATTAGTTCTTCTGTATGGCTTCTTTTTCTATTTAGTGGAAAGCCTGGTTTAAGCTGTGGTGTACCCATTTTCTTCATACTCGATATGATAGAAGGGCCGATAAAGAAAGAAAGGTCAGTTGGTGAGCCCTACGGCTATTTATTCAAAAAAGAGATTGTCACTGCCTTCTAAAGAGCTAGTTATATTCTGCAAAAGCTTCTTCTCCAGATACAACAAGAAAGGGTTCGGATCATTAGGCTTTGCCCAACTCCCCCCCCAGGGATCGACGGAGTCAGGTAGATCAACAACTTGTACTCCTGGAAAAAAATATCCCATCACTAAACCTCAGAATATCCCATCTGAGGTCTTAGTCGAGACTTGGCTTTACGCCCTTTGGTCTTTCATTTTTCGTTTTAGTCAAATGTCTCCGGCTGCTGCAAGGCTATCTTTTTTTCATTCCAATTTTCAATGATTGACATTCCTCTGTATTCTGTTGTGCTCAGCGAACGGATAAAGCCTAGCAGGATGGGAAGTCACATCTCTTTCGGAGTGGAATCGGGAATCCTACTCTAAATCAGAATCGAATCACGCAGTCTCAGAGAACGAAAGACTCCATAGCCTGCCTATACTAGAAAAGTTGGTAAAGTCGTCCTGTACTACATCCGTAAGCCTTCCATGTATTGCATTCGTTCGTTAGGGAATGTGTACTAGCCCCTATTGGAAACTCCAAACAGGGTAATTCGACTTCTACGTACAAGTGGACCAGCCAGTCCGTCCGTCTGGTGATTGATTACGTATTCAAGGCCGTCCTAGCTTTCCAATTTCTTTGTCCTAACAACGTTCGAAGCCCTTGCTTTAGATTCTTTCTTTCCAATCTCTTGAGTGTGGTATGAGTCTAAGTGTATTAGTGGTGTATAAAGAATTTGCTTCCGTCTTTTGTGTAATCAGATTCTACTTGATTTGATTTGCCAAGGAAGAACGAAAAGGATTCTTGCAAGCGGGCAAACTTGAGCTTTTTCTTCCATGCTGATTTTCTATCCCGGATCTAGCCAGATTCGCAGCTGATGCCAACAATGCTCTGGCTGCAGGTCGCTTTAGGTTTCATTCCAACACCTCAGTGTGTTGCAAGAGTGATAGATCTGCTTCGGGAGACTATGGTCCCCAAAGAAAGATCCGATCTGTCCTCCAAACTGCGCTTTCGCATACCTGGAAGAGATTTGAATGAAGACTCTTTTTAG

mRNA sequence

ATGCATCTAGCGTTAGAACCAGAGTCCAAGTCTAAAACCGAGTCAAAGTCTGAGTACAACTCTTCCTTGTATCAGTCTGAGTCTGCTAGTGAATCTCCTTTTAAAGAGGGTAATTCGACTTCTACGTACAAGTGGACCAGCCAGTCCGTCCGTCTGGTGATTGATTACGTATTCAAGGCCGTCCTAGCTTTCCAATTTCTTTGTCCTAACAACGTTCGAAGCCCTTGCTTTAGATTCTTTCTTTCCAATCTCTTGAGTGTGCCAGATTCGCAGCTGATGCCAACAATGCTCTGGCTGCAGGTCGCTTTAGGTTTCATTCCAACACCTCAGTGTGTTGCAAGAGTGATAGATCTGCTTCGGGAGACTATGGTCCCCAAAGAAAGATCCGATCTGTCCTCCAAACTGCGCTTTCGCATACCTGGAAGAGATTTGAATGAAGACTCTTTTTAG

Coding sequence (CDS)

ATGCATCTAGCGTTAGAACCAGAGTCCAAGTCTAAAACCGAGTCAAAGTCTGAGTACAACTCTTCCTTGTATCAGTCTGAGTCTGCTAGTGAATCTCCTTTTAAAGAGGGTAATTCGACTTCTACGTACAAGTGGACCAGCCAGTCCGTCCGTCTGGTGATTGATTACGTATTCAAGGCCGTCCTAGCTTTCCAATTTCTTTGTCCTAACAACGTTCGAAGCCCTTGCTTTAGATTCTTTCTTTCCAATCTCTTGAGTGTGCCAGATTCGCAGCTGATGCCAACAATGCTCTGGCTGCAGGTCGCTTTAGGTTTCATTCCAACACCTCAGTGTGTTGCAAGAGTGATAGATCTGCTTCGGGAGACTATGGTCCCCAAAGAAAGATCCGATCTGTCCTCCAAACTGCGCTTTCGCATACCTGGAAGAGATTTGAATGAAGACTCTTTTTAG

Protein sequence

MHLALEPESKSKTESKSEYNSSLYQSESASESPFKEGNSTSTYKWTSQSVRLVIDYVFKAVLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQLMPTMLWLQVALGFIPTPQCVARVIDLLRETMVPKERSDLSSKLRFRIPGRDLNEDSF

Homology

[Close]

BLAST of Csor.00g087840 vs. NCBI nr
Match: KAG6590428.1 (hypothetical protein SDJN03_15851, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288 bits (738), Expect = 4.50e-98
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MHLALEPESKSKTESKSEYNSSLYQSESASESPFKEGNSTSTYKWTSQSVRLVIDYVFKA 60
           MHLALEPESKSKTESKSEYNSSLYQSESASESPFKEGNSTSTYKWTSQSVRLVIDYVFKA
Sbjct: 1   MHLALEPESKSKTESKSEYNSSLYQSESASESPFKEGNSTSTYKWTSQSVRLVIDYVFKA 60

Query: 61  VLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQLMPTMLWLQVALGFIPTPQCVARVIDLLR 120
           VLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQLMPTMLWLQVALGFIPTPQCVARVIDLLR
Sbjct: 61  VLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQLMPTMLWLQVALGFIPTPQCVARVIDLLR 120

Query: 121 ETMVPKERSDLSSKLRFRIPGRDLNEDSF 149
           ETMVPKERSDLSSKLRFRIPGRDLNEDSF
Sbjct: 121 ETMVPKERSDLSSKLRFRIPGRDLNEDSF 149

[Close]

BLAST of Csor.00g087840 vs. NCBI nr
Match: KAG6577416.1 (hypothetical protein SDJN03_24990, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129 bits (324), Expect = 4.46e-35
Identity = 78/140 (55.71%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 36  EGNSTSTYKWTSQSVRLVIDYVFKAVLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQ---- 95
           +GNSTSTYKWTSQS+ LVIDYVF AVLAFQFLCPNNVRSPCFRFFLS LLS+ + +    
Sbjct: 11  QGNSTSTYKWTSQSICLVIDYVFLAVLAFQFLCPNNVRSPCFRFFLSYLLSMEERKGFLQ 70

Query: 96  ------LMPTMLWLQVALGFIP----------------TPQCVARVIDLLRETMVPKERS 149
                  +P    +Q   GF                  T  C     D      VPKERS
Sbjct: 71  AGKLELFLPCCFSIQDLAGFAADANNALAAGRFRFHSNTSVCCKG--DRSASGEVPKERS 130

[Close]

BLAST of Csor.00g087840 vs. NCBI nr
Match: KAG6585967.1 (hypothetical protein SDJN03_18700, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (307), Expect = 4.04e-33
Identity = 83/149 (55.70%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 1   MHLALEPESKSKTESKSEYNSSLYQSESASESPFKEGNSTSTYKWTSQSVRLVIDYVFKA 60
           MHL  EPES+S+TES+SEYNSSLYQSESASESPFKE                  D    A
Sbjct: 1   MHLESEPESESETESESEYNSSLYQSESASESPFKE------------------DLAGFA 60

Query: 61  VLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQLMPTMLWLQVALGFIPTPQCVARVIDLLR 120
             A      NN                         LWLQVALGFIPTPQCVARVID L+
Sbjct: 61  ADA------NN-------------------------LWLQVALGFIPTPQCVARVIDPLQ 100

Query: 121 ETMVPKERSDLSSKLRFRIPGRDLNEDSF 149
           ETMVPKERSDLSS+LRFRI G DLNED+F
Sbjct: 121 ETMVPKERSDLSSRLRFRIHGIDLNEDTF 100

[Close]

BLAST of Csor.00g087840 vs. NCBI nr
Match: KAG6570995.1 (hypothetical protein SDJN03_29910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121 bits (304), Expect = 5.00e-30
Identity = 75/137 (54.74%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 39  STSTYKWTSQSVRLVIDYVFKAVLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQ------- 98
           STSTYKWTSQSVR+VIDYVF AVLAF FLCPN+V SPCFRFFLS LLSV + +       
Sbjct: 208 STSTYKWTSQSVRMVIDYVFLAVLAFPFLCPNSVLSPCFRFFLSYLLSVEERKGFLQAGK 267

Query: 99  ---LMPTMLWLQVALGFIP----------------TPQCVARVIDLLRETMVPKERSDLS 149
               +P+   +Q   GF                  T  C     D      VPKERSDLS
Sbjct: 268 LELFLPSCFSIQDLAGFAADANNALAAGRFRFHSNTSVCCKG--DRSASGEVPKERSDLS 327

[Close]

BLAST of Csor.00g087840 vs. NCBI nr
Match: KAG6590430.1 (hypothetical protein SDJN03_15853, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (260), Expect = 1.51e-24
Identity = 64/97 (65.98%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 6   EPESKSKTESKSEYNSSLYQSESASESPFKE-------GNSTSTYKW------TSQSVRL 65
           EPES+S+TES+SEYNSSLYQSES SESPFKE       G      +        S S RL
Sbjct: 45  EPESESETESESEYNSSLYQSESTSESPFKEECVLAPIGTPIRVIRLLRTSGPASPSDRL 104

Query: 66  VIDYVFKAVLAFQFLCPNNVRSPCFRFFLSNLLSVPD 89
           VIDYVFK VLAFQFLCPN+VRSPCFRFFLS LLSV +
Sbjct: 105 VIDYVFKVVLAFQFLCPNSVRSPCFRFFLSYLLSVEE 141

The following BLAST results are available for this feature:

BLAST of Csor.00g087840 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g087840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590428.1	4.50e-98	100.00	hypothetical protein SDJN03_15851, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6577416.1	4.46e-35	55.71	hypothetical protein SDJN03_24990, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585967.1	4.04e-33	55.70	hypothetical protein SDJN03_18700, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6570995.1	5.00e-30	54.74	hypothetical protein SDJN03_29910, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6590430.1	1.51e-24	65.98	hypothetical protein SDJN03_15853, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g087840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g087840 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g087840.m01	Csor.00g087840.m01	mRNA