Csor.00g087530 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g087530
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 10973387 .. 10973695 (-)
RNA-Seq ExpressionCsor.00g087530
SyntenyCsor.00g087530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAATGTCTTCCACAATGAAGTTAGCAGTTGTATTCCTTGTCTGCTTAGCCATTTTTTCACCATCGACCAAGACCCTCGTGACAGCAGACTTTGATGCTGATTTCAGTATCATTGGTTGCATTCCCTTCATTGCAGAAGGAGCAATGTGTGTGGTAGAAGCTCTCACGGTTCCACTTGGTGCTATTGGCACTTGCTGCAAAGCCGTTTTGAAGCTTAGTGATTGTGACTCTAATATTTTCAAAAGTATTCCCCAATCCGACATGGATACAGTTAAGCATATTTGTAATATGTTACCGGTTTAA

mRNA sequence

ATGGCAGCAATGTCTTCCACAATGAAGTTAGCAGTTGTATTCCTTGTCTGCTTAGCCATTTTTTCACCATCGACCAAGACCCTCGTGACAGCAGACTTTGATGCTGATTTCAGTATCATTGGTTGCATTCCCTTCATTGCAGAAGGAGCAATGTGTGTGGTAGAAGCTCTCACGGTTCCACTTGGTGCTATTGGCACTTGCTGCAAAGCCGTTTTGAAGCTTAGTGATTGTGACTCTAATATTTTCAAAAGTATTCCCCAATCCGACATGGATACAGTTAAGCATATTTGTAATATGTTACCGGTTTAA

Coding sequence (CDS)

ATGGCAGCAATGTCTTCCACAATGAAGTTAGCAGTTGTATTCCTTGTCTGCTTAGCCATTTTTTCACCATCGACCAAGACCCTCGTGACAGCAGACTTTGATGCTGATTTCAGTATCATTGGTTGCATTCCCTTCATTGCAGAAGGAGCAATGTGTGTGGTAGAAGCTCTCACGGTTCCACTTGGTGCTATTGGCACTTGCTGCAAAGCCGTTTTGAAGCTTAGTGATTGTGACTCTAATATTTTCAAAAGTATTCCCCAATCCGACATGGATACAGTTAAGCATATTTGTAATATGTTACCGGTTTAA

Protein sequence

MAAMSSTMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEALTVPLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNMLPV
Homology
BLAST of Csor.00g087530 vs. NCBI nr
Match: KAG6590464.1 (hypothetical protein SDJN03_15887, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (500), Expect = 2.76e-63
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MAAMSSTMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEALTVP 60
           MAAMSSTMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEALTVP
Sbjct: 1   MAAMSSTMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEALTVP 60

Query: 61  LGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNMLPV 102
           LGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNMLPV
Sbjct: 61  LGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNMLPV 102

BLAST of Csor.00g087530 vs. NCBI nr
Match: KAG6590465.1 (hypothetical protein SDJN03_15888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157 bits (398), Expect = 1.03e-47
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MAAMS---STMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEAL 60
           MAAMS   STMKLAVVFLVCLAIFSPSTKTLVTA+FDADF+IIGCIPF+AEGAMC VEAL
Sbjct: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL 60

Query: 61  TVPLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNML 100
             P  AI TCC+AVLKL+DCDSNIFKSIPQSDMD VK +C+ L
Sbjct: 61  KSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL 103

BLAST of Csor.00g087530 vs. NCBI nr
Match: KAG6590467.1 (hypothetical protein SDJN03_15890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156 bits (395), Expect = 2.95e-47
Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MAAMS---STMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEAL 60
           MAAMS   STMKLAVVFLVCLAIFSPSTKTLVTA+FDADF+IIGCIPF+AEGAMC VEAL
Sbjct: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL 60

Query: 61  TVPLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNML 100
             P  A+ TCC+AVLKL++CDSNIFKSIPQSDMD VK +C+ L
Sbjct: 61  KAPTSAVKTCCEAVLKLNECDSNIFKSIPQSDMDIVKQVCDAL 103

BLAST of Csor.00g087530 vs. NCBI nr
Match: KAG6590468.1 (hypothetical protein SDJN03_15891, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (322), Expect = 3.70e-36
Identity = 63/96 (65.62%), Postives = 80/96 (83.33%), Query Frame = 0

Query: 5   SSTMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEALTVPLGAI 64
           +STMKL +VF+VCLA+F+ ST TLVTAD + DF I GCIPF+ EGAMCVVEAL +P  AI
Sbjct: 5   ASTMKLVLVFVVCLALFASSTMTLVTADSN-DFDIAGCIPFVGEGAMCVVEALRLPTRAI 64

Query: 65  GTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNML 100
            TCCKA+ KL+DCDS+IF +IPQ+DM+ V+H+C +L
Sbjct: 65  KTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVCRLL 99

BLAST of Csor.00g087530 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.16e-17
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 6   STMKLAVVFLVCLAIFSPSTKTLVTA------DFDADFSIIGCIPFIAEGAMCVVEALTV 65
           S MKL +VFLVC+AI +PST    T           +F  + C PFI E  +CV + +  
Sbjct: 9   SAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATLCVTDVIKF 68

Query: 66  PLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNM 99
           P+    +CCKA+ KL+DC   I++ IP  DMD +K IC++
Sbjct: 69  PIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

BLAST of Csor.00g087530 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.53e-17
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 6   STMKLAVVFLVCLAIFSPSTKTLVTA------DFDADFSIIGCIPFIAEGAMCVVEALTV 65
           S MKL +VFLVC+AI +PST    T           +F  + C PFI E  +CV + +  
Sbjct: 9   SAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATLCVTDVIKF 68

Query: 66  PLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNM 99
           P+    +CCKA+ KL+DC   I++ IP  DMD +K IC++
Sbjct: 69  PIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

BLAST of Csor.00g087530 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.44e-16
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 5   SSTMKLAVVFLVCLAIFSPSTKTLVTAD--------FDAD-FSIIGCIPFIAEGAMCVVE 64
           +ST++LA+VFLVC+ I +PS      A+        FD D  S   C PFI E  MCVV+
Sbjct: 9   ASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVD 68

Query: 65  ALTVPLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNM 99
            + +P+ +  +CCKA+  L+DC   I++ IP  DMD +K IC +
Sbjct: 69  VIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

BLAST of Csor.00g087530 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.09e-15
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 0

Query: 8  MKLAVVFLVCLAIFSPSTKTLVTA------DFDADFSIIGCIPFIAEGAMCVVEALTVPL 67
          MKL +VFLVC+AI +PST    T           +F  + C PFI E  +CV   +  P+
Sbjct: 1  MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 68 GAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNM 99
              +CCKA+ KL DC  +I++ IP SDM+ +K  C++
Sbjct: 61 APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

BLAST of Csor.00g087530 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.66e-14
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 0

Query: 5   SSTMKLAVVFLVCLAIFSPSTKT----------LVTADFDADFSIIGCIPFIAEGAMCVV 64
           +ST++LA+VFLVC+ I +PS             LV  D D+ FS   C PFI E  MC+V
Sbjct: 9   ASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFS--NCAPFILEATMCMV 68

Query: 65  EALTVPLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNM 99
           + + +P+    +CCKA+  L+DC   I++ IP   MD +K IC +
Sbjct: 69  DVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKICGL 109

BLAST of Csor.00g087530 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.33e-14
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 5   SSTMKLAVVFLVCLAIFSPSTKT----------LVTADFDADFSIIGCIPFIAEGAMCVV 64
           +ST++LA+VFLVC+ I +PS             LV  D D+ FS   C PFI E  MC+V
Sbjct: 9   ASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFS--NCAPFILEATMCMV 68

Query: 65  EALTVPLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNM 99
           + + +P+    +CCKA+  L+DC   I+  IP   MD +K IC +
Sbjct: 69  DVIKLPVAPHPSCCKAISDLNDCAPEIYHHIP--GMDVIKKICGL 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590464.12.76e-63100.00hypothetical protein SDJN03_15887, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590465.11.03e-4781.55hypothetical protein SDJN03_15888, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590467.12.95e-4779.61hypothetical protein SDJN03_15890, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590468.13.70e-3665.63hypothetical protein SDJN03_15891, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050069.13.16e-1741.00hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034... [more]
Match NameE-valueIdentityDescription
A0A5A7U9A11.53e-1741.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD67.44e-1641.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
A0A5D3CGK91.09e-1539.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGL71.66e-1440.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4A73.33e-1440.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g087530.m01Csor.00g087530.m01mRNA