Csor.00g087520 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g087520
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 11000158 .. 11000469 (+)
RNA-Seq ExpressionCsor.00g087520
SyntenyCsor.00g087520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAATGTCCCTCAATGCTTCCACAATGAAGTTAGCAGTTGTGTTCCTTGTCTGCTTAGCCATTTTTTCACCATCGACCAAGACCCTCGTGACAGCAAACTTTGATGCTGATTTCAATATCATTGGTTGCATTCCCTTTGTTGCAGAAGGGGCAATGTGTGCGGTAGAAGCTCTCAAGTCTCCAACTAGTGCTATTAAGACTTGCTGTGAAGCCGTTTTGAAGCTTAATGATTGTGACTCTAATATTTTCAAAAGTATTCCCCAATCCGACATGGATATAGTTAAGCAAGTTTGTGATGCGTTATAG

mRNA sequence

ATGGCAGCAATGTCCCTCAATGCTTCCACAATGAAGTTAGCAGTTGTGTTCCTTGTCTGCTTAGCCATTTTTTCACCATCGACCAAGACCCTCGTGACAGCAAACTTTGATGCTGATTTCAATATCATTGGTTGCATTCCCTTTGTTGCAGAAGGGGCAATGTGTGCGGTAGAAGCTCTCAAGTCTCCAACTAGTGCTATTAAGACTTGCTGTGAAGCCGTTTTGAAGCTTAATGATTGTGACTCTAATATTTTCAAAAGTATTCCCCAATCCGACATGGATATAGTTAAGCAAGTTTGTGATGCGTTATAG

Coding sequence (CDS)

ATGGCAGCAATGTCCCTCAATGCTTCCACAATGAAGTTAGCAGTTGTGTTCCTTGTCTGCTTAGCCATTTTTTCACCATCGACCAAGACCCTCGTGACAGCAAACTTTGATGCTGATTTCAATATCATTGGTTGCATTCCCTTTGTTGCAGAAGGGGCAATGTGTGCGGTAGAAGCTCTCAAGTCTCCAACTAGTGCTATTAAGACTTGCTGTGAAGCCGTTTTGAAGCTTAATGATTGTGACTCTAATATTTTCAAAAGTATTCCCCAATCCGACATGGATATAGTTAAGCAAGTTTGTGATGCGTTATAG

Protein sequence

MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEALKSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL
Homology
BLAST of Csor.00g087520 vs. NCBI nr
Match: KAG6590465.1 (hypothetical protein SDJN03_15888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (507), Expect = 2.54e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL 60
           MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL
Sbjct: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL 60

Query: 61  KSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL 103
           KSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL
Sbjct: 61  KSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL 103

BLAST of Csor.00g087520 vs. NCBI nr
Match: KAG6590467.1 (hypothetical protein SDJN03_15890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (499), Expect = 4.23e-63
Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL 60
           MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL
Sbjct: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL 60

Query: 61  KSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL 103
           K+PTSA+KTCCEAVLKLN+CDSNIFKSIPQSDMDIVKQVCDAL
Sbjct: 61  KAPTSAVKTCCEAVLKLNECDSNIFKSIPQSDMDIVKQVCDAL 103

BLAST of Csor.00g087520 vs. NCBI nr
Match: KAG6590464.1 (hypothetical protein SDJN03_15887, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (406), Expect = 6.27e-49
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEAL 60
           MAAMS   STMKLAVVFLVCLAIFSPSTKTLVTA+FDADF+IIGCIPF+AEGAMC VEAL
Sbjct: 1   MAAMS---STMKLAVVFLVCLAIFSPSTKTLVTADFDADFSIIGCIPFIAEGAMCVVEAL 60

Query: 61  KSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVCDAL 103
             P  AI TCC+AVLKL+DCDSNIFKSIPQSDMD VK +C+ L
Sbjct: 61  TVPLGAIGTCCKAVLKLSDCDSNIFKSIPQSDMDTVKHICNML 100

BLAST of Csor.00g087520 vs. NCBI nr
Match: KAG6590468.1 (hypothetical protein SDJN03_15891, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (349), Expect = 2.96e-40
Identity = 68/97 (70.10%), Postives = 84/97 (86.60%), Query Frame = 0

Query: 4   MSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDADFNIIGCIPFVAEGAMCAVEALKSP 63
           MSLNASTMKL +VF+VCLA+F+ ST TLVTA+ + DF+I GCIPFV EGAMC VEAL+ P
Sbjct: 1   MSLNASTMKLVLVFVVCLALFASSTMTLVTADSN-DFDIAGCIPFVGEGAMCVVEALRLP 60

Query: 64  TSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVC 100
           T AIKTCC+A+ KLNDCDS+IF +IPQ+DM++V+ VC
Sbjct: 61  TRAIKTCCKAIFKLNDCDSDIFGNIPQADMEVVRHVC 96

BLAST of Csor.00g087520 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 4.62e-22
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 0

Query: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTA------NFDADFNIIGCIPFVAEGAM 60
           MAA SLN S MKL +VFLVC+AI +PST    T       +   +F  + C PF+ E  +
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CAVEALKSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVC 100
           C  + +K P +   +CC+A+ KLNDC   I++ IP  DMD++K++C
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

BLAST of Csor.00g087520 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.24e-22
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 0

Query: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTA------NFDADFNIIGCIPFVAEGAM 60
           MAA SLN S MKL +VFLVC+AI +PST    T       +   +F  + C PF+ E  +
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CAVEALKSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVC 100
           C  + +K P +   +CC+A+ KLNDC   I++ IP  DMD++K++C
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

BLAST of Csor.00g087520 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.18e-17
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 0

Query: 5   SLNASTMKLAVVFLVCLAIFSPSTKTLVTAN--------FDAD-FNIIGCIPFVAEGAMC 64
           S +AST++LA+VFLVC+ I +PS      A         FD D  +   C PF+ E  MC
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMC 65

Query: 65  AVEALKSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVC 100
            V+ +K P ++  +CC+A+  LNDC   I++ IP  DMD++K++C
Sbjct: 66  VVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

BLAST of Csor.00g087520 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.27e-17
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 2   AAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTAN--------FDADFNIIGCIPFVAEGA 61
           AA S +AST++LA+VFLVC+ I +PS      A          D D +   C PF+ E  
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 62  MCAVEALKSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVC 100
           MC V+ +K P +   +CC+A+  LNDC   I++ IP   MD++K++C
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKIC 107

BLAST of Csor.00g087520 vs. ExPASy TrEMBL
Match: A0A0A0LYQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.56e-17
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 1   MAAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTANFDA--------DFNIIGCIPFVAEG 60
           MAA SL   TMKL +VF+ C AIF+P    +  A            D +   C  FV E 
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  AMCAVEALKSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVC 100
             C ++  K P +A  TCC+A+ KL  C S+ F  IP +DM ++K VC
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

BLAST of Csor.00g087520 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.56e-17
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 2   AAMSLNASTMKLAVVFLVCLAIFSPSTKTLVTAN--------FDADFNIIGCIPFVAEGA 61
           AA S +AST++LA+VFLVC+ I +PS      A          D D +   C PF+ E  
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 62  MCAVEALKSPTSAIKTCCEAVLKLNDCDSNIFKSIPQSDMDIVKQVC 100
           MC V+ +K P +   +CC+A+  LNDC   I+  IP   MD++K++C
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIP--GMDVIKKIC 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590465.12.54e-64100.00hypothetical protein SDJN03_15888, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590467.14.23e-6397.09hypothetical protein SDJN03_15890, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590464.16.27e-4981.55hypothetical protein SDJN03_15887, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590468.12.96e-4070.10hypothetical protein SDJN03_15891, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050069.14.62e-2242.45hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034... [more]
Match NameE-valueIdentityDescription
A0A5A7U9A12.24e-2242.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD61.18e-1740.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
A0A5D3CGL73.27e-1739.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYQ35.56e-1738.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
A0A5A7U4A76.56e-1739.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g087520.m01Csor.00g087520.m01mRNA