Csor.00g087160 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCACTGGACAATATATCGATCGCATCTCGAAGTACACATGTTGTGGCACGCCTTGCTTAGTTGTTGCCTACATATACATCGAAAGGTATCTTCAAAAGATGGGTGCTTACCTTACTTCTTTGAATGTCCACCGCCTTTTGATCACTAGCATCATGGTTGCAGCGAAGTTTAACGACGCCGGGTAAGTTCTAATATCGCCTCGTTAGCTTAACTGTGTAATTAACTCGAGATGACAAGATTTTGAGATTGGAGATTATCTGCAGCTTAGTCTTTCCATTCATGCTCAACGCTTACTCTCTTTCAGTTGACTCACCCTTCAATCAGTTCAGTTCAGGTTTACATATGTCAAGTCCACCGTTAACCGTTATTGGCCTTGGGCTTCCTCTCATAGTTTTAAAATGCGTCTACTAGGGAGAAGATTCCACACCCTTATAAGAAATACTTCGTTCCCCTCTCCAACCGACATGCGATCTCACAATCCACCCCCTTTTGGGCTAGCACCTCACCGTCCAGGGATTGGCTCTATACCATTTGTAATAGCCCAAGCCCACCGCAAGCAAATATTGTCCTATTTGAGCTTTCCCTTCTGGGCTTCTCCTTGAGTTTTTAAAACGCATCTACTAGGGAGAGGTTTCTACACCCTTATAAGGAATGTTTCGTTCCCATCTCCAACCGATGTGGGATCTCACAATATAGTTGACCATTTTAGTAAAGAAATGGATTAAATAGATGATTTAGTCCCTCATGTTTGATTCATTCTTCAATTTTGTGCAATATAATAGTAACGTTAGAAGACAATGACATGCAACTCAAACCATTGAGTCACTTGTTCGATACTACTAAACCCGATATCGTGCATCTCATCTGTCATATTTTGGCATGCCTGTTTCCTCCTGATTTCTGGGATGTTATACACAACTTGTGCTATGCTATGCAGGTGCTATAACAATGCCTTTTATGCCAAGGTAGGAGGAGTGAGCACCAAAGAAATGAACAGCATGGAGATAGAATTGCTATTCAATTTGGACTTCAGACTTCATGTCACTGCAGATGTGTTCAGAGCTCACTGTTTGCAGCTCCAAAAGGAAGGTCTGGGGGAGAATCAAATTGATCGACGACCCGGGAACAAGACTCGAACGAGATGCTTACCTCAAATCGCAAGCTATACTTGCAGAGCCATTTAA ATGAGCACTGGACAATATATCGATCGCATCTCGAAGTACACATGTTGTGGCACGCCTTGCTTAGTTGTTGCCTACATATACATCGAAAGGTATCTTCAAAAGATGGGTGCTTACCTTACTTCTTTGAATGTCCACCGCCTTTTGATCACTAGCATCATGGTTGCAGCGAAGTTTAACGACGCCGGGTGCTATAACAATGCCTTTTATGCCAAGGTAGGAGGAGTGAGCACCAAAGAAATGAACAGCATGGAGATAGAATTGCTATTCAATTTGGACTTCAGACTTCATGTCACTGCAGATGTGTTCAGAGCTCACTGTTTGCAGCTCCAAAAGGAAGGTCTGGGGGAGAATCAAATTGATCGACGACCCGGGAACAAGACTCGAACGAGATGCTTACCTCAAATCGCAAGCTATACTTGCAGAGCCATTTAA ATGAGCACTGGACAATATATCGATCGCATCTCGAAGTACACATGTTGTGGCACGCCTTGCTTAGTTGTTGCCTACATATACATCGAAAGGTATCTTCAAAAGATGGGTGCTTACCTTACTTCTTTGAATGTCCACCGCCTTTTGATCACTAGCATCATGGTTGCAGCGAAGTTTAACGACGCCGGGTGCTATAACAATGCCTTTTATGCCAAGGTAGGAGGAGTGAGCACCAAAGAAATGAACAGCATGGAGATAGAATTGCTATTCAATTTGGACTTCAGACTTCATGTCACTGCAGATGTGTTCAGAGCTCACTGTTTGCAGCTCCAAAAGGAAGGTCTGGGGGAGAATCAAATTGATCGACGACCCGGGAACAAGACTCGAACGAGATGCTTACCTCAAATCGCAAGCTATACTTGCAGAGCCATTTAA MSTGQYIDRISKYTCCGTPCLVVAYIYIERYLQKMGAYLTSLNVHRLLITSIMVAAKFNDAGCYNNAFYAKVGGVSTKEMNSMEIELLFNLDFRLHVTADVFRAHCLQLQKEGLGENQIDRRPGNKTRTRCLPQIASYTCRAI Homology
BLAST of Csor.00g087160 vs. ExPASy Swiss-Prot
Match: Q75HV0 (Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 8.2e-33 Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy Swiss-Prot
Match: Q8LB60 (Cyclin-U3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU3-1 PE=1 SV=2) HSP 1 Score: 136.0 bits (341), Expect = 3.4e-31 Identity = 62/120 (51.67%), Postives = 85/120 (70.83%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28 Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 1.8e-27 Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 3.9e-27 Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0
BLAST of Csor.00g087160 vs. NCBI nr
Match: KAG6599249.1 (Cyclin-P3-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 294 bits (753), Expect = 1.48e-100 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Csor.00g087160 vs. NCBI nr
Match: XP_022946012.1 (cyclin-P3-1-like [Cucurbita moschata] >XP_022946013.1 cyclin-P3-1-like [Cucurbita moschata] >XP_023521765.1 cyclin-P3-1-like [Cucurbita pepo subsp. pepo] >XP_023545675.1 cyclin-P3-1 [Cucurbita pepo subsp. pepo] >XP_023545676.1 cyclin-P3-1 [Cucurbita pepo subsp. pepo] >KAG7030248.1 Cyclin-P3-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 294 bits (753), Expect = 1.76e-99 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Csor.00g087160 vs. NCBI nr
Match: XP_022999267.1 (cyclin-P3-1-like [Cucurbita maxima] >XP_022999268.1 cyclin-P3-1-like [Cucurbita maxima]) HSP 1 Score: 290 bits (741), Expect = 1.19e-97 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Csor.00g087160 vs. NCBI nr
Match: XP_022937500.1 (cyclin-P3-1-like [Cucurbita moschata] >XP_022937501.1 cyclin-P3-1-like [Cucurbita moschata] >XP_022937502.1 cyclin-P3-1-like [Cucurbita moschata] >XP_022937503.1 cyclin-P3-1-like [Cucurbita moschata] >XP_022937504.1 cyclin-P3-1-like [Cucurbita moschata] >XP_022937506.1 cyclin-P3-1-like [Cucurbita moschata] >XP_022937507.1 cyclin-P3-1-like [Cucurbita moschata]) HSP 1 Score: 264 bits (674), Expect = 2.03e-87 Identity = 126/143 (88.11%), Postives = 130/143 (90.91%), Query Frame = 0
BLAST of Csor.00g087160 vs. NCBI nr
Match: KAG6586265.1 (Cyclin-P3-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 262 bits (670), Expect = 8.29e-86 Identity = 125/143 (87.41%), Postives = 129/143 (90.21%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy TrEMBL
Match: A0A6J1G2L7 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111450231 PE=3 SV=1) HSP 1 Score: 294 bits (753), Expect = 8.53e-100 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy TrEMBL
Match: A0A6J1KJ49 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111493690 PE=3 SV=1) HSP 1 Score: 290 bits (741), Expect = 5.74e-98 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy TrEMBL
Match: A0A6J1FBC9 (cyclin-P3-1-like OS=Cucurbita moschata OX=3662 GN=LOC111443893 PE=3 SV=1) HSP 1 Score: 264 bits (674), Expect = 9.83e-88 Identity = 126/143 (88.11%), Postives = 130/143 (90.91%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy TrEMBL
Match: A0A6J1HQ42 (cyclin-P3-1-like OS=Cucurbita maxima OX=3661 GN=LOC111465658 PE=3 SV=1) HSP 1 Score: 259 bits (663), Expect = 4.65e-86 Identity = 123/143 (86.01%), Postives = 130/143 (90.91%), Query Frame = 0
BLAST of Csor.00g087160 vs. ExPASy TrEMBL
Match: A0A5A7TWJ7 (Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00220 PE=3 SV=1) HSP 1 Score: 251 bits (642), Expect = 6.40e-83 Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 0
BLAST of Csor.00g087160 vs. TAIR 10
Match: AT3G63120.1 (cyclin p1;1 ) HSP 1 Score: 136.0 bits (341), Expect = 2.4e-32 Identity = 62/120 (51.67%), Postives = 85/120 (70.83%), Query Frame = 0
BLAST of Csor.00g087160 vs. TAIR 10
Match: AT3G05327.1 (Cyclin family protein ) HSP 1 Score: 131.7 bits (330), Expect = 4.6e-31 Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 0
BLAST of Csor.00g087160 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 ) HSP 1 Score: 124.8 bits (312), Expect = 5.6e-29 Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of Csor.00g087160 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 ) HSP 1 Score: 123.6 bits (309), Expect = 1.3e-28 Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 0
BLAST of Csor.00g087160 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 ) HSP 1 Score: 122.5 bits (306), Expect = 2.8e-28 Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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