Csor.00g087090 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g087090
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	PsbP domain-containing protein
Location	Csor_Chr05: 9394727 .. 9395316 (+)
RNA-Seq Expression	Csor.00g087090
Synteny	Csor.00g087090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACCACAGCCATAGCTCCTTCTTCACATCCCTCCATTTTCTTCAACCCACTTCTCAATTTCACCATTTCAAATCCCCTAATCCCCTCCAACTCGACATTTCTCTCGACCCTTGTTGCAGTTTCCGATGGATTTCGGGCTCAAACGTCGATCATTTGCGCCAGGAAGAAGAGGAGGAGACCCGTGTTTCTGAGATCGACCAAATTAGTGCTTGAATTGGCGTCTCTCTTAGCCTCCAATCTTAAGATCTTACCGCCGCCTCTGGATTTGGTCGTTGCGGAATTGAGCGGCGGAAATGGGAATGGAGGTGGTTCGCGGTTGTGGAGGAGATTTGGTGGAGGCGGCTATGATGGATGGAGAGGTAAGAGGAAGAAAACCCCATTGTTGATTGGGTTTTTGATTCTTTGTGGTCTTGCTTTGTGCGTTTTCACTGATTTTGAGCTCGATGCGATTTGTGGAGCTCTTGGATTTGCTCTATTTAGCGTTGCATTAATTCAATTGTGGCAGAGAAGTGGGATTTCGAAACATTTCGTTTGGGGATTTGGCCTTTTCGGCATTCTGATTGCCTTGGGATTGAGAAGATCTGA

mRNA sequence

ATGCAGACCACAGCCATAGCTCCTTCTTCACATCCCTCCATTTTCTTCAACCCACTTCTCAATTTCACCATTTCAAATCCCCTAATCCCCTCCAACTCGACATTTCTCTCGACCCTTGTTGCAGTTTCCGATGGATTTCGGGCTCAAACGTCGATCATTTGCGCCAGGAAGAAGAGGAGGAGACCCGTGTTTCTGAGATCGACCAAATTAGTGCTTGAATTGGCGTCTCTCTTAGCCTCCAATCTTAAGATCTTACCGCCGCCTCTGGATTTGGTCGTTGCGGAATTGAGCGGCGGAAATGGGAATGGAGGTGGTTCGCGGTTGTGGAGGAGATTTGGTGGAGGCGGCTATGATGGATGGAGAGAGAAGTGGGATTTCGAAACATTTCGTTTGGGGATTTGGCCTTTTCGGCATTCTGATTGCCTTGGGATTGAGAAGATCTGA

Coding sequence (CDS)

ATGCAGACCACAGCCATAGCTCCTTCTTCACATCCCTCCATTTTCTTCAACCCACTTCTCAATTTCACCATTTCAAATCCCCTAATCCCCTCCAACTCGACATTTCTCTCGACCCTTGTTGCAGTTTCCGATGGATTTCGGGCTCAAACGTCGATCATTTGCGCCAGGAAGAAGAGGAGGAGACCCGTGTTTCTGAGATCGACCAAATTAGTGCTTGAATTGGCGTCTCTCTTAGCCTCCAATCTTAAGATCTTACCGCCGCCTCTGGATTTGGTCGTTGCGGAATTGAGCGGCGGAAATGGGAATGGAGGTGGTTCGCGGTTGTGGAGGAGATTTGGTGGAGGCGGCTATGATGGATGGAGAGAGAAGTGGGATTTCGAAACATTTCGTTTGGGGATTTGGCCTTTTCGGCATTCTGATTGCCTTGGGATTGAGAAGATCTGA

Protein sequence

MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRRRPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGWREKWDFETFRLGIWPFRHSDCLGIEKI

Homology

[Close]

BLAST of Csor.00g087090 vs. NCBI nr
Match: KAG6599256.1 (hypothetical protein SDJN03_09034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298 bits (763), Expect = 5.96e-102
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REKWDFETFRLGIWPFRHSDCLGIEKI 147
           REKWDFETFRLGIWPFRHSDCLGIEKI
Sbjct: 121 REKWDFETFRLGIWPFRHSDCLGIEKI 147

[Close]

BLAST of Csor.00g087090 vs. NCBI nr
Match: XP_022946763.1 (uncharacterized protein LOC111450736 isoform X1 [Cucurbita moschata])

HSP 1 Score: 238 bits (608), Expect = 3.12e-77
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REK 123
           R K
Sbjct: 121 RGK 123

[Close]

BLAST of Csor.00g087090 vs. NCBI nr
Match: XP_022946764.1 (uncharacterized protein LOC111450736 isoform X2 [Cucurbita moschata])

HSP 1 Score: 236 bits (603), Expect = 6.67e-77
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120

[Close]

BLAST of Csor.00g087090 vs. NCBI nr
Match: KAG7030256.1 (hypothetical protein SDJN02_08603, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (606), Expect = 6.93e-77
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTK+VLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKIVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REK 123
           R K
Sbjct: 121 RGK 123

[Close]

BLAST of Csor.00g087090 vs. NCBI nr
Match: XP_022999122.1 (uncharacterized protein LOC111493602 isoform X2 [Cucurbita maxima])

HSP 1 Score: 232 bits (591), Expect = 1.26e-73
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSH SIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHASIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASL ASNLKILPPPLDLVVAELSGG+GNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGDGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REK 123
           R K
Sbjct: 121 RGK 123

[Close]

BLAST of Csor.00g087090 vs. ExPASy TrEMBL
Match: A0A6J1G4R2 (uncharacterized protein LOC111450736 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450736 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 1.51e-77
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REK 123
           R K
Sbjct: 121 RGK 123

[Close]

BLAST of Csor.00g087090 vs. ExPASy TrEMBL
Match: A0A6J1G4V7 (uncharacterized protein LOC111450736 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450736 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 3.23e-77
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120

[Close]

BLAST of Csor.00g087090 vs. ExPASy TrEMBL
Match: A0A6J1K9Z1 (uncharacterized protein LOC111493602 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493602 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 6.09e-74
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSH SIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHASIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASL ASNLKILPPPLDLVVAELSGG+GNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGDGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REK 123
           R K
Sbjct: 121 RGK 123

[Close]

BLAST of Csor.00g087090 vs. ExPASy TrEMBL
Match: A0A6J1KC74 (uncharacterized protein LOC111493602 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493602 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 1.06e-73
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSH SIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHASIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASL ASNLKILPPPLDLVVAELSGG+GNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGDGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REK 123
           R K
Sbjct: 121 RGK 123

[Close]

BLAST of Csor.00g087090 vs. ExPASy TrEMBL
Match: A0A6J1KIQ4 (uncharacterized protein LOC111493602 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493602 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 1.55e-73
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MQTTAIAPSSHPSIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60
           MQTTAIAPSSH SIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR
Sbjct: 1   MQTTAIAPSSHASIFFNPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRR 60

Query: 61  RPVFLRSTKLVLELASLLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGW 120
           RPVFLRSTKLVLELASL ASNLKILPPPLDLVVAELSGG+GNGGGSRLWRRFGGGGYDGW
Sbjct: 61  RPVFLRSTKLVLELASLFASNLKILPPPLDLVVAELSGGDGNGGGSRLWRRFGGGGYDGW 120

Query: 121 REKWDFETFRLGI 133
           R    F  F + +
Sbjct: 121 RAL-GFAVFSVAL 132

[Close]

BLAST of Csor.00g087090 vs. TAIR 10
Match: AT5G27440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, shoot, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-12
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 28  LIPSNSTFLSTLVAVSDGF----RAQTSIICARKKRRRPVFLRSTKLVLELASLLASNLK 87
           L P  S  LS++  VS       + Q+ ++CA+K+++R  + R T+ +    SLLA NL+
Sbjct: 16  LNPQKSLRLSSISRVSSSISHRTQFQSLVLCAKKRKQRVGYRRITRFLFNSLSLLAPNLQ 75

Query: 88  ILPPPLDLVVAELSGGNGNGGGS---RLWRRFGGGGYDGWREK 124
           ILP PLDLV+A+L G +G GGG      WR  G G +DGWR K
Sbjct: 76  ILPQPLDLVIADLGGVDGGGGGRGGLGFWR--GWGRFDGWRRK 116

The following BLAST results are available for this feature:

BLAST of Csor.00g087090 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g087090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599256.1	5.96e-102	100.00	hypothetical protein SDJN03_09034, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946763.1	3.12e-77	99.19	uncharacterized protein LOC111450736 isoform X1 [Cucurbita moschata]	[more]
XP_022946764.1	6.67e-77	100.00	uncharacterized protein LOC111450736 isoform X2 [Cucurbita moschata]	[more]
KAG7030256.1	6.93e-77	98.37	hypothetical protein SDJN02_08603, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022999122.1	1.26e-73	96.75	uncharacterized protein LOC111493602 isoform X2 [Cucurbita maxima]	[more]

BLAST of Csor.00g087090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4R2	1.51e-77	99.19	uncharacterized protein LOC111450736 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G4V7	3.23e-77	100.00	uncharacterized protein LOC111450736 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K9Z1	6.09e-74	96.75	uncharacterized protein LOC111493602 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KC74	1.06e-73	96.75	uncharacterized protein LOC111493602 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KIQ4	1.55e-73	90.23	uncharacterized protein LOC111493602 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Csor.00g087090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27440.1	4.9e-12	42.72	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g087090.m01	Csor.00g087090.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane