Csor.00g087060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g087060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionincreased DNA methylation 2
LocationCsor_Chr05: 9403256 .. 9403839 (+)
RNA-Seq ExpressionCsor.00g087060
SyntenyCsor.00g087060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCGACACCCCCAAAGCAGGGAAAGAGACCAGATAGGAATACCACTAAGATGGAGCGAAACCTTCGTGGACACCCAGGTAACAGTGAGCAGGAAGGTGAAGGTGTACCTACATGCCCTAGGTGCAGCCTCAAGCACTGGGGTGAGTGCTTAATGGGGACAGGAATATGTTTCAGATGTTTGCCACCAAGCCACAAAGCGGCTAATTGCACACAACGAAACCAAGATGTAAACCACCCAAAAGGGAAAATCCAAAAAGGACAATATCTACTAGTAGTGGTCTTGAGCTGTCACATTCACTCAATGGTATTGAACCTGCAGACAATACATCAAATAAACAGTTCTCTCCTGATGATCTACGACTTGACTCTATTACACCATCAGTTCATAGTTCATAGTGTTTCACATAATAGTAATTTGACACCTCCACACACCACATCTGACTCTGATATTGTGGAAAAGAAATTTGGTCCAGCAATGCTATTTCTTCCTAGACAACCATGTGAAGAAGATTGGGGGGAATCTAGTAGCTGCTACAAGTACAAGATTTACTCCTCCATTGCTTCAGGTATGGTGGTGTAA

mRNA sequence

ATGCCCCGACACCCCCAAAGCAGGGAAAGAGACCAGATAGGAATACCACTAAGATGGAGCGAAACCTTCGTGGACACCCAGGTAACAGTGAGCAGGAAGGTGAAGGTGTACCTACATGCCCTAGGTGCAGCCTCAAGCACTGGGTTCATAGTTCATAGTGTTTCACATAATAGTAATTTGACACCTCCACACACCACATCTGACTCTGATATTGTGGAAAAGAAATTTGGTCCAGCAATGCTATTTCTTCCTAGACAACCATGTGAAGAAGATTGGGGGGAATCTAGTAGCTGCTACAAGTACAAGATTTACTCCTCCATTGCTTCAGGTATGGTGGTGTAA

Coding sequence (CDS)

ATGCCCCGACACCCCCAAAGCAGGGAAAGAGACCAGATAGGAATACCACTAAGATGGAGCGAAACCTTCGTGGACACCCAGGTAACAGTGAGCAGGAAGGTGAAGGTGTACCTACATGCCCTAGGTGCAGCCTCAAGCACTGGGTTCATAGTTCATAGTGTTTCACATAATAGTAATTTGACACCTCCACACACCACATCTGACTCTGATATTGTGGAAAAGAAATTTGGTCCAGCAATGCTATTTCTTCCTAGACAACCATGTGAAGAAGATTGGGGGGAATCTAGTAGCTGCTACAAGTACAAGATTTACTCCTCCATTGCTTCAGGTATGGTGGTGTAA

Protein sequence

MPRHPQSRERDQIGIPLRWSETFVDTQVTVSRKVKVYLHALGAASSTGFIVHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDWGESSSCYKYKIYSSIASGMVV
Homology
[Close]
BLAST of Csor.00g087060 vs. NCBI nr
Match: KAG6599259.1 (hypothetical protein SDJN03_09037, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235 bits (600), Expect = 3.43e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MPRHPQSRERDQIGIPLRWSETFVDTQVTVSRKVKVYLHALGAASSTGFIVHSVSHNSNL 60
           MPRHPQSRERDQIGIPLRWSETFVDTQVTVSRKVKVYLHALGAASSTGFIVHSVSHNSNL
Sbjct: 1   MPRHPQSRERDQIGIPLRWSETFVDTQVTVSRKVKVYLHALGAASSTGFIVHSVSHNSNL 60

Query: 61  TPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDWGESSSCYKYKIYSSIASGMVV 113
           TPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDWGESSSCYKYKIYSSIASGMVV
Sbjct: 61  TPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDWGESSSCYKYKIYSSIASGMVV 113

[Close]
BLAST of Csor.00g087060 vs. NCBI nr
Match: AAO45755.1 (heat-shock protein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.0 bits (188), Expect = 9.50e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLPRQP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPRQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. NCBI nr
Match: TYK18327.1 (increased DNA methylation 2 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 9.50e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLPRQP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPRQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. NCBI nr
Match: XP_008454867.1 (PREDICTED: increased DNA methylation 2 [Cucumis melo] >KAA0047948.1 increased DNA methylation 2 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 9.50e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLPRQP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPRQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. NCBI nr
Match: XP_004139188.1 (increased DNA methylation 2 [Cucumis sativus] >XP_011648802.1 increased DNA methylation 2 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 8.76e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLP QP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPGQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. ExPASy TrEMBL
Match: A0A5A7TYA7 (Increased DNA methylation 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00080 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.60e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLPRQP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPRQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. ExPASy TrEMBL
Match: A0A5D3D459 (Increased DNA methylation 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00380 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.60e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLPRQP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPRQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. ExPASy TrEMBL
Match: Q84KA7 (Heat-shock protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.60e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLPRQP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPRQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. ExPASy TrEMBL
Match: A0A1S3BZJ4 (increased DNA methylation 2 OS=Cucumis melo OX=3656 GN=LOC103495173 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.60e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLPRQP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPRQPSEEDW 259

[Close]
BLAST of Csor.00g087060 vs. ExPASy TrEMBL
Match: A0A0A0LJJ8 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021580 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.24e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 51  VHSVSHNSNLTPPHTTSDSDIVEKKFGPAMLFLPRQPCEEDW 92
           V SV +N NLTPPHT SDS+++EKKFGPAMLFLP QP EEDW
Sbjct: 218 VRSVPYNGNLTPPHTNSDSNLLEKKFGPAMLFLPGQPSEEDW 259

The following BLAST results are available for this feature:
BLAST of Csor.00g087060 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g087060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599259.13.43e-78100.00hypothetical protein SDJN03_09037, partial [Cucurbita argyrosperma subsp. sorori... [more]
AAO45755.19.50e-1478.57heat-shock protein-like protein [Cucumis melo subsp. melo][more]
TYK18327.19.50e-1478.57increased DNA methylation 2 [Cucumis melo var. makuwa][more]
XP_008454867.19.50e-1478.57PREDICTED: increased DNA methylation 2 [Cucumis melo] >KAA0047948.1 increased DN... [more]
XP_004139188.18.76e-1376.19increased DNA methylation 2 [Cucumis sativus] >XP_011648802.1 increased DNA meth... [more]
BLAST of Csor.00g087060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TYA74.60e-1478.57Increased DNA methylation 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3D4594.60e-1478.57Increased DNA methylation 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Q84KA74.60e-1478.57Heat-shock protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A1S3BZJ44.60e-1478.57increased DNA methylation 2 OS=Cucumis melo OX=3656 GN=LOC103495173 PE=4 SV=1[more]
A0A0A0LJJ84.24e-1376.19SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021580 PE=3 S... [more]
BLAST of Csor.00g087060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g087060.m01Csor.00g087060.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034440 lipid oxidation
biological_process GO:1901537 positive regulation of DNA demethylation
cellular_component GO:0005634 nucleus
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen