Csor.00g086910 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g086910
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	disease resistance protein RPS6-like
Location	Csor_Chr05: 9518501 .. 9518767 (+)
RNA-Seq Expression	Csor.00g086910
Synteny	Csor.00g086910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTACACTACGATTATTGGACACAAGATGAGTCTAGTATTGGTGTTTACATGGTGGGGATATATGGGATTGGAGGCATTGGTAAGACGACTTTGGCCAAAGCTTTATACAACAAAATTGCTAACCAATTTGAAGCTTGCTTCTTTCTATCCAATGTTAAGGGAGCTTCAAAGCTTGCTTCTTTCTATCCAATGTTAAGGGAGCTTCAAAGCAATTCAATGGCCTTGTTCAACTACAGAAAATCCTACTCCATGAAATCTTAA

mRNA sequence

ATGATGTTACACTACGATTATTGGACACAAGATGAGTCTAGTATTGGTGTTTACATGGTGGGGATATATGGGATTGGAGGCATTGGTAAGACGACTTTGGCCAAAGCTTTATACAACAAAATTGCTAACCAATTTGAAGCTTGCTTCTTTCTATCCAATGTTAAGGGAGCTTCAAAGCTTGCTTCTTTCTATCCAATGTTAAGGGAGCTTCAAAGCAATTCAATGGCCTTGTTCAACTACAGAAAATCCTACTCCATGAAATCTTAA

Coding sequence (CDS)

ATGATGTTACACTACGATTATTGGACACAAGATGAGTCTAGTATTGGTGTTTACATGGTGGGGATATATGGGATTGGAGGCATTGGTAAGACGACTTTGGCCAAAGCTTTATACAACAAAATTGCTAACCAATTTGAAGCTTGCTTCTTTCTATCCAATGTTAAGGGAGCTTCAAAGCTTGCTTCTTTCTATCCAATGTTAAGGGAGCTTCAAAGCAATTCAATGGCCTTGTTCAACTACAGAAAATCCTACTCCATGAAATCTTAA

Protein sequence

MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKLASFYPMLRELQSNSMALFNYRKSYSMKS

Homology

[Close]

BLAST of Csor.00g086910 vs. ExPASy Swiss-Prot
Match: V9M398 (Disease resistance protein RUN1 OS=Vitis rotundifolia OX=103349 GN=RUN1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-08
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 8   WTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKLASFYPML 67
           W     S  V MVG+YG+GGIGKTT+AK +YN+++ +FE   FL N++         P+ 
Sbjct: 213 WRLHMESSDVRMVGMYGVGGIGKTTIAKVIYNELSREFEYMSFLENIREKFNTQGVSPLQ 272

Query: 68  REL 71
            +L
Sbjct: 273 NQL 275

[Close]

BLAST of Csor.00g086910 vs. ExPASy Swiss-Prot
Match: Q40253 (Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 14  SIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKLASFYPMLRELQSN 73
           S  V MVG+YG+GGIGKTT AKA+YNKI++ F+ C F+ N++   +      + ++L S 
Sbjct: 255 SENVTMVGLYGMGGIGKTTTAKAVYNKISSCFDCCCFIDNIRETQEKDGVVVLQKKLVSE 314

Query: 74  SMAL 78
            + +
Sbjct: 315 ILRI 318

[Close]

BLAST of Csor.00g086910 vs. ExPASy Swiss-Prot
Match: V9M2S5 (Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.7e-07
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 14  SIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKLASFYPMLREL 71
           S  V MVGIYG+GGIGKTT+AK +YN+++ +FE   FL N++  S     + +  +L
Sbjct: 214 SSDVRMVGIYGVGGIGKTTIAKVIYNELSCEFEYMSFLENIREGSNPQVLFHLQNQL 270

[Close]

BLAST of Csor.00g086910 vs. ExPASy Swiss-Prot
Match: A0A290U7C4 (Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-05
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 16  GVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVK 56
           GV +VGI+G+GG+GKTT A+AL+N+    FE+  FL +VK
Sbjct: 210 GVRLVGIWGMGGVGKTTAARALFNRYYQNFESACFLEDVK 249

[Close]

BLAST of Csor.00g086910 vs. ExPASy Swiss-Prot
Match: Q9SZ66 (Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 17  VYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKLASFYPMLRELQS 73
           V+++GI G+ GIGKTTLA  LY ++  QF+   FL+N++  S  +    +L++L S
Sbjct: 209 VHIIGIVGMVGIGKTTLADCLYGRMRGQFDGSCFLTNIRENSGRSGLESLLQKLFS 264

[Close]

BLAST of Csor.00g086910 vs. NCBI nr
Match: KAG6599274.1 (Disease resistance protein L6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (453), Expect = 1.48e-56
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKL 60
          MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKL
Sbjct: 1  MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKL 60

Query: 61 ASFYPMLRELQSNSMALFNYRKSYSMKS 88
          ASFYPMLRELQSNSMALFNYRKSYSMKS
Sbjct: 61 ASFYPMLRELQSNSMALFNYRKSYSMKS 88

[Close]

BLAST of Csor.00g086910 vs. NCBI nr
Match: XP_023537672.1 (disease resistance protein RPS6-like isoform X6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 5.76e-23
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           + LH  YWTQDE SIGVYMVGIYGIGGIGKTTLAKALYNKIA+QFEAC FLS V+ ASK
Sbjct: 95  LRLHSPYWTQDEPSIGVYMVGIYGIGGIGKTTLAKALYNKIAHQFEACCFLSKVREASK 153

[Close]

BLAST of Csor.00g086910 vs. NCBI nr
Match: XP_023537671.1 (disease resistance protein RPS6-like isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 5.76e-23
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           + LH  YWTQDE SIGVYMVGIYGIGGIGKTTLAKALYNKIA+QFEAC FLS V+ ASK
Sbjct: 108 LRLHSPYWTQDEPSIGVYMVGIYGIGGIGKTTLAKALYNKIAHQFEACCFLSKVREASK 166

[Close]

BLAST of Csor.00g086910 vs. NCBI nr
Match: XP_023537669.1 (disease resistance protein RPS6-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 5.77e-23
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           + LH  YWTQDE SIGVYMVGIYGIGGIGKTTLAKALYNKIA+QFEAC FLS V+ ASK
Sbjct: 204 LRLHSPYWTQDEPSIGVYMVGIYGIGGIGKTTLAKALYNKIAHQFEACCFLSKVREASK 262

[Close]

BLAST of Csor.00g086910 vs. NCBI nr
Match: XP_023537666.1 (disease resistance protein RPS6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537667.1 disease resistance protein RPS6-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023537668.1 disease resistance protein RPS6-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 5.77e-23
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           + LH  YWTQDE SIGVYMVGIYGIGGIGKTTLAKALYNKIA+QFEAC FLS V+ ASK
Sbjct: 204 LRLHSPYWTQDEPSIGVYMVGIYGIGGIGKTTLAKALYNKIAHQFEACCFLSKVREASK 262

[Close]

BLAST of Csor.00g086910 vs. ExPASy TrEMBL
Match: A0A6J1G4A0 (TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.27e-22
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 7   YWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           YWTQDE SIGVYMVGIYGIGGIGKTTLAKALYNKIA+QFEAC FLS V+ ASK
Sbjct: 101 YWTQDEPSIGVYMVGIYGIGGIGKTTLAKALYNKIAHQFEACCFLSKVREASK 153

[Close]

BLAST of Csor.00g086910 vs. ExPASy TrEMBL
Match: A0A6J1G440 (TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.27e-22
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 7   YWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           YWTQDE SIGVYMVGIYGIGGIGKTTLAKALYNKIA+QFEAC FLS V+ ASK
Sbjct: 114 YWTQDEPSIGVYMVGIYGIGGIGKTTLAKALYNKIAHQFEACCFLSKVREASK 166

[Close]

BLAST of Csor.00g086910 vs. ExPASy TrEMBL
Match: A0A6J1G421 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.28e-22
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 7   YWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           YWTQDE SIGVYMVGIYGIGGIGKTTLAKALYNKIA+QFEAC FLS V+ ASK
Sbjct: 210 YWTQDEPSIGVYMVGIYGIGGIGKTTLAKALYNKIAHQFEACCFLSKVREASK 262

[Close]

BLAST of Csor.00g086910 vs. ExPASy TrEMBL
Match: A0A6J1G3A0 (TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450406 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.48e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 4   HYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           +++YWTQDE SI VYMVGIYG+GGIGKTTLAKALYNKIA QFEAC FLSNV+ ASK
Sbjct: 207 NFNYWTQDEPSISVYMVGIYGMGGIGKTTLAKALYNKIAYQFEACCFLSNVREASK 262

[Close]

BLAST of Csor.00g086910 vs. ExPASy TrEMBL
Match: A0A6J1G361 (TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450404 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.16e-21
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1   MMLHYDYWTQDESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 59
           + LH  YWT+DE SI VYMVGIYGIGGIGKTT AKALYNKIANQFEAC F+S V+  SK
Sbjct: 163 LRLHSHYWTEDEPSISVYMVGIYGIGGIGKTTFAKALYNKIANQFEACCFISKVRETSK 221

[Close]

BLAST of Csor.00g086910 vs. TAIR 10
Match: AT1G27170.1 (transmembrane receptors;ATP binding )

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 12  ESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGAS 59
           ESS GV ++G+YG+GGIGKTTLAKA YNKI   FE   F+S+++  S
Sbjct: 206 ESSSGVQVLGLYGMGGIGKTTLAKAFYNKIVGNFEQRAFISDIRERS 252

[Close]

BLAST of Csor.00g086910 vs. TAIR 10
Match: AT1G27170.2 (transmembrane receptors;ATP binding )

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 12  ESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGAS 59
           ESS GV ++G+YG+GGIGKTTLAKA YNKI   FE   F+S+++  S
Sbjct: 206 ESSSGVQVLGLYGMGGIGKTTLAKAFYNKIVGNFEQRAFISDIRERS 252

[Close]

BLAST of Csor.00g086910 vs. TAIR 10
Match: AT5G40100.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-09
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 11  DESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASKLASFYPMLREL 70
           D ++  V M+GI+G+GGIGKTT+AK LY+++++QF A +F  ++KG  K      +   L
Sbjct: 202 DSNNDEVRMIGIWGMGGIGKTTIAKCLYDQLSSQFTASYFTQDIKGIHKELDLLHLQNRL 261

Query: 71  QSNSM 76
             N++
Sbjct: 262 LYNTL 266

[Close]

BLAST of Csor.00g086910 vs. TAIR 10
Match: AT1G27180.1 (disease resistance protein (TIR-NBS-LRR class), putative )

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-08
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 12  ESSIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEA-CFFLSNVKGAS 59
           ESS G+ ++G+YG+GGIGKTTLAKA YNKI   F     F+ +V+G S
Sbjct: 379 ESSSGIQVMGLYGMGGIGKTTLAKAFYNKIIVNFNRHRVFIESVRGKS 426

[Close]

BLAST of Csor.00g086910 vs. TAIR 10
Match: AT5G18360.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-08
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 14  SIGVYMVGIYGIGGIGKTTLAKALYNKIANQFEACFFLSNVKGASK 60
           S  V MVGI+G  GIGKTT+A+AL+N+++  F+   F+ NVKG+S+
Sbjct: 204 STEVKMVGIWGPAGIGKTTIARALFNRLSENFQHTIFMENVKGSSR 249

The following BLAST results are available for this feature:

BLAST of Csor.00g086910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
V9M398	5.6e-08	41.27	Disease resistance protein RUN1 OS=Vitis rotundifolia OX=103349 GN=RUN1 PE=1 SV=...	[more]
Q40253	1.2e-07	42.19	Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1	[more]
V9M2S5	4.7e-07	45.61	Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=...	[more]
A0A290U7C4	1.5e-05	55.00	Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV...	[more]
Q9SZ66	1.3e-04	41.07	Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=...	[more]

BLAST of Csor.00g086910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599274.1	1.48e-56	100.00	Disease resistance protein L6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023537672.1	5.76e-23	83.05	disease resistance protein RPS6-like isoform X6 [Cucurbita pepo subsp. pepo]	[more]
XP_023537671.1	5.76e-23	83.05	disease resistance protein RPS6-like isoform X5 [Cucurbita pepo subsp. pepo]	[more]
XP_023537669.1	5.77e-23	83.05	disease resistance protein RPS6-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023537666.1	5.77e-23	83.05	disease resistance protein RPS6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Csor.00g086910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4A0	6.27e-22	88.68	TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G440	6.27e-22	88.68	TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G421	6.28e-22	88.68	TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G3A0	8.48e-22	82.14	TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450406 PE=4...	[more]
A0A6J1G361	2.16e-21	76.27	TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450404 PE=4...	[more]

BLAST of Csor.00g086910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27170.1	1.0e-09	59.57	transmembrane receptors;ATP binding	[more]
AT1G27170.2	1.0e-09	59.57	transmembrane receptors;ATP binding	[more]
AT5G40100.1	8.9e-09	40.00	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G27180.1	7.5e-08	56.25	disease resistance protein (TIR-NBS-LRR class), putative	[more]
AT5G18360.1	7.5e-08	52.17	Disease resistance protein (TIR-NBS-LRR class) family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..87 e-value: 8.7E-14 score: 53.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 16..73
IPR002182	NB-ARC	PFAM	PF00931	NB-ARC	coord: 12..73 e-value: 5.8E-7 score: 28.9
IPR044974	Disease resistance protein, plants	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 15..60
None	No IPR available	PANTHER	PTHR11017:SF308	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 15..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g086910.m01	Csor.00g086910.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity