Csor.00g086320 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g086320
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionVQ domain-containing protein
LocationCsor_Chr05: 9951900 .. 9952289 (+)
RNA-Seq ExpressionCsor.00g086320
SyntenyCsor.00g086320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTGCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCCATTCTCCCACTCGCCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCTCTCCTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTCACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

mRNA sequence

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTGCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCCATTCTCCCACTCGCCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCTCTCCTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTCACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTGCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCCATTCTCCCACTCGCCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCTCTCCTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTCACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

Protein sequence

MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFMGFQASCLFQ
Homology
BLAST of Csor.00g086320 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258 bits (660), Expect = 7.94e-87
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSP 60
           MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSP
Sbjct: 1   MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSP 60

Query: 61  TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFM 120
           TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFM
Sbjct: 61  TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFM 120

Query: 121 GFQASCLFQ 129
           GFQASCLFQ
Sbjct: 121 GFQASCLFQ 129

BLAST of Csor.00g086320 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 145 bits (365), Expect = 9.65e-42
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0

Query: 1   MGKCGENEW------KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60
           MGKCGEN++      + Q Q+QNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FTSHSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDN--MSSLLEFDDEACFVTLD 120
           F S++PTRR N K     A+TPS        +ME LK SD+  M SLL+FD + CF T +
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 N--VLTNNFMGFQASCLFQ 129
           N  +L NN M FQ+SC FQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

BLAST of Csor.00g086320 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.07e-16
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 35  MMIKASNAHEFRAIVQQLTGFTSHS-PTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLS 94
           MMIKAS+A EFRAIVQQLTGF S+S PTRR N K     A+TPS S  HA+ +ME LK S
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPS-SMFHADREMEVLKFS 60

Query: 95  DN-MSSLLEFDDEACFV 109
           D+ M+SLL+FDD+ C +
Sbjct: 61  DDHMASLLQFDDQGCLL 76

BLAST of Csor.00g086320 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 67.4 bits (163), Expect = 3.59e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0

Query: 15 SQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 57
          S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG  S
Sbjct: 31 SKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNS 73

BLAST of Csor.00g086320 vs. NCBI nr
Match: KAF3969568.1 (hypothetical protein CMV_006648 [Castanea mollissima])

HSP 1 Score: 66.2 bits (160), Expect = 5.45e-11
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 11 DQKQSQNP---TKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSPTRRSNHK 70
          +Q + QNP   TKV+R+P+K+KYISSPM++KA NA EFRAIVQ+LTG       + S  +
Sbjct: 14 EQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTG-------QHSEDR 73

Query: 71 PPPHAAQTPSTSTLHANPQMEALK 91
            PH + T  T+  HA PQ++ ++
Sbjct: 74 SDPHQSYTMITN--HAEPQIKMVE 88

BLAST of Csor.00g086320 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 4.67e-42
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0

Query: 1   MGKCGENEW------KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60
           MGKCGEN++      + Q Q+QNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FTSHSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDN--MSSLLEFDDEACFVTLD 120
           F S++PTRR N K     A+TPS        +ME LK SD+  M SLL+FD + CF T +
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 N--VLTNNFMGFQASCLFQ 129
           N  +L NN M FQ+SC FQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

BLAST of Csor.00g086320 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.00e-16
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 35  MMIKASNAHEFRAIVQQLTGFTSHS-PTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLS 94
           MMIKAS+A EFRAIVQQLTGF S+S PTRR N K     A+TPS S  HA+ +ME LK S
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPS-SMFHADREMEVLKFS 60

Query: 95  DN-MSSLLEFDDEACFV 109
           D+ M+SLL+FDD+ C +
Sbjct: 61  DDHMASLLQFDDQGCLL 76

BLAST of Csor.00g086320 vs. ExPASy TrEMBL
Match: A0A7N2L612 (VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.82e-12
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 11 DQKQSQNP---TKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSPTRRSNHK 70
          +Q + QNP   TKV+R+P+K+KYISSPM++KA NA EFRAIVQ+LTG       + S  +
Sbjct: 14 EQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTG-------QHSEDR 73

Query: 71 PPPHAAQTPSTSTLHANPQMEALK 91
            PH + T  T+  HA PQ++ +K
Sbjct: 74 SDPHQSYTMITN--HAEPQIKMVK 88

BLAST of Csor.00g086320 vs. ExPASy TrEMBL
Match: A0A7N2L6S4 (VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.82e-12
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 11 DQKQSQNP---TKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSPTRRSNHK 70
          +Q + QNP   TKV+R+P+K+KYISSPM++KA NA EFRAIVQ+LTG       + S  +
Sbjct: 14 EQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTG-------QHSEDR 73

Query: 71 PPPHAAQTPSTSTLHANPQMEALK 91
            PH + T  T+  HA PQ++ +K
Sbjct: 74 SDPHQSYTMITN--HAQPQIKMVK 88

BLAST of Csor.00g086320 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.74e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0

Query: 15 SQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 57
          S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG  S
Sbjct: 31 SKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNS 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6599333.17.94e-87100.00hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN60779.19.65e-4261.15hypothetical protein Csa_019238 [Cucumis sativus][more]
KAA0063578.12.07e-1662.34hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa][more]
XP_021282108.13.59e-1174.42uncharacterized protein LOC110414990 [Herrania umbratica][more]
KAF3969568.15.45e-1147.62hypothetical protein CMV_006648 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
A0A0A0LIA74.67e-4261.15VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=... [more]
A0A5A7V7M11.00e-1662.34VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A7N2L6126.82e-1248.81VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2L6S46.82e-1248.81VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6J1A5331.74e-1174.42uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 31..59
e-value: 4.6E-10
score: 38.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR33624:SF17VQ MOTIF PROTEINcoord: 5..125
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 5..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g086320.m01Csor.00g086320.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of DNA-binding transcription factor activity