Csor.00g085720 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g085720
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	thylakoid lumenal 16.5 kDa protein, chloroplastic
Location	Csor_Chr05: 10359658 .. 10361745 (+)
RNA-Seq Expression	Csor.00g085720
Synteny	Csor.00g085720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATCCTTCCTATCAACAGCGAACACGTTCCATTCTTCCACACCTTCTTCTTCTTCATCTTCCTCTTCCTCTTCCTCTTCTTCACCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGACTGGTAATCTGCAAGGGAAATAACGACCCACCATCGCAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGTTTTGTATGCACTCTATGTGTTTGTGTTTAGTTCTCTGTGAAACTTCCAACTTCAGAATTTGATCCCATTACTGAATACTTTGACTGATTGGTTGTGTTTGTATACTAGAGTTCTTAAGCCAAGTATATGTTTGTAATGTGGGGTTCCTTATGTCCTGGCTGTAGGTTTGCTAATCCTATGGGATACATAAATCCAAGTTCTTCAACCTATGTAGTTACTTTTGCAAACTACAAACCCACAAGTCAAAACTCACCCATATAAATTTAGGTTTCCATAACTCAATCCTTCTTAGAATAATCCATGTAACGGTTGAAGCCCGCCGCTAGCAGATATTGTCCTTTTTTAGCTTTTCCGTCTAGGCTTCCCCTCGAGGTTTTTAAAGTGTGTCTGCTATAGAGAGGTTTTCACACCTTTATAAAGAATGGTTCGTTTTCCTCCCCAACCGATGTGGGATCTCGCAATCCACTCCCTTCAGGACCCAACGTCCTTGTTCGCACACCGCCTCGTGTACACACCTCTTTGGGGCTCAGCCTCCTCATTGGCACATCGCCCAGTGTCTGGTTTTGATACCATTTGTAACGGTCCAAGCCCGCGACTAGAAGATATTGTCCTATTTGGGCTTCTCCTCAAAGTTTTTAAAGCGCGTTTGCTAGGGAGAGGTTTCACACCCTTACAAAGAATGCTTCGTTCTCCTCCCCAACCAATGTGGGATCTCACAATCCACCCCCCTTTGGGGCTTAGCGTCCTTGTTGGCACATCGCCTCATGTCCACCCCCCTTCGGGGCTCAACCTCCTTGCTGGTACATCATCCGATGTCTAGCTCTAATACCATTTGTAACGACCCAAGCCCACCGCTAGCAGATATTGTCCGCTTTGGGCTTTTCCTTCTGGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTTAGGGAGAAGTTTTCACACCCTTGTAAAGAATGCTTCATTCTCCTCCCCAACTGACGTGGCATCTCACCATCCAAAAGCAGGCTATAAAGCTTTTCAACCTCATTTGAAGCAAAGCTATACTTAATAAAACATAGAGTCTGGTCTAGGTTTTTGAAATCATGAGGCTTAATTCTTCATGGGAGTGGATCATAGAGTTTATCATAAGCTAGCAGAGTTGAGCTATGAGAAAGGGCTTCTACAACAAAAGCTGAAACCTTGCCATAATCATTCGGAATTTTGCAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAATGATGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGGTTAGCAAAATAGATTGAACATTTCATGAGAAGTGAAATGATTCTTCGAGGAATTTCTAACTTTTTTGTGTAATTTCTTGAGCAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTCAACTCCTCTCTAGCTTCATTAATCTCATCAGGTGGTTAAAACAGGGTAAAACTACTAAGAACTGAAAGGTTTAACCCTCCACAGAGTTCTAAACAATATAACATTTTTGCATTGCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCTTCTGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGA

mRNA sequence

ATGGCAACATCCTTCCTATCAACAGCGAACACGTTCCATTCTTCCACACCTTCTTCTTCTTCATCTTCCTCTTCCTCTTCCTCTTCTTCACCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGACTGGTAATCTGCAAGGGAAATAACGACCCACCATCGCAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAATGATGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTCAACTCCTCTCTAGCTTCATTAATCTCATCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCTTCTGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGA

Coding sequence (CDS)

ATGGCAACATCCTTCCTATCAACAGCGAACACGTTCCATTCTTCCACACCTTCTTCTTCTTCATCTTCCTCTTCCTCTTCCTCTTCTTCACCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGACTGGTAATCTGCAAGGGAAATAACGACCCACCATCGCAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAATGATGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTCAACTCCTCTCTAGCTTCATTAATCTCATCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCTTCTGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGA

Protein sequence

MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPPSQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL

Homology

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BLAST of Csor.00g085720 vs. ExPASy Swiss-Prot
Match: O22773 (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 193.0 bits (489), Expect = 3.9e-48
Identity = 132/241 (54.77%), Postives = 161/241 (66.80%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNND 60
           MA S L  ST N F S+T SSS  +  + S             N +N     ++ K    
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG------------NSKNQTSSSLLWK---- 60

Query: 61  PPSQIPTLTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKR 120
                    +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR
Sbjct: 61  ---------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKR 120

Query: 121 LERQGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFN 180
           +ERQ V++SA KEKGYLQ++VYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF 
Sbjct: 121 IERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFT 180

Query: 181 KLSSSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKG 237
           KLS+SPEE +EV+AFNSSLASLI+SV +ND++SSK AFV+SA A EKWT L GL+ QLKG
Sbjct: 181 KLSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKG 216

[Close]

BLAST of Csor.00g085720 vs. NCBI nr
Match: KAG6599393.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 423 bits (1088), Expect = 1.45e-148
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of Csor.00g085720 vs. NCBI nr
Match: XP_022946074.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 417 bits (1071), Expect = 5.63e-146
Identity = 234/236 (99.15%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLN RNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVA ASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVALASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of Csor.00g085720 vs. NCBI nr
Match: KAG7030378.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 416 bits (1069), Expect = 1.10e-145
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSSP LLRSRFSCLNCRNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSP-LLRSRFSCLNCRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Csor.00g085720 vs. NCBI nr
Match: XP_023545851.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545852.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545854.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413 bits (1061), Expect = 1.63e-144
Identity = 231/236 (97.88%), Postives = 231/236 (97.88%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSS    SPPLLRSRFSCLNCRNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSS----SPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFIS FIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISGFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 232

[Close]

BLAST of Csor.00g085720 vs. NCBI nr
Match: XP_022999175.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 408 bits (1049), Expect = 1.22e-142
Identity = 229/236 (97.03%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSS+PSSSSSSSSSSS SPPLLRSRFSCLNCRNNARR VICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSSPSSSSSSSSSSS-SPPLLRSRFSCLNCRNNARRSVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           S+IP+LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SKIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVV+KLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLS+S
Sbjct: 121 VISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Csor.00g085720 vs. ExPASy TrEMBL
Match: A0A6J1G2S1 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450272 PE=4 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 2.73e-146
Identity = 234/236 (99.15%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLN RNNARRLVICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVA ASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVALASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of Csor.00g085720 vs. ExPASy TrEMBL
Match: A0A6J1KEL3 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493636 PE=4 SV=1)

HSP 1 Score: 408 bits (1049), Expect = 5.93e-143
Identity = 229/236 (97.03%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSS+PSSSSSSSSSSS SPPLLRSRFSCLNCRNNARR VICKGNNDPP
Sbjct: 1   MATSFLSTANTFHSSSPSSSSSSSSSSS-SPPLLRSRFSCLNCRNNARRSVICKGNNDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           S+IP+LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SKIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQEVV+KLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLS+S
Sbjct: 121 VISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Csor.00g085720 vs. ExPASy TrEMBL
Match: A0A5A7V8J2 (Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00360 PE=4 SV=1)

HSP 1 Score: 379 bits (974), Expect = 1.53e-131
Identity = 212/236 (89.83%), Postives = 226/236 (95.76%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSS S  SPPLLRSRF CL C NN +RLVICK ++DPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYS--SPPLLRSRFGCLYCHNNTKRLVICKSSSDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           S+IP LTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QG
Sbjct: 61  SKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQE+VYKLSKVGQAID+NDF+TASSVLGGS+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVT++DV+SSKTAFVASASA EKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

[Close]

BLAST of Csor.00g085720 vs. ExPASy TrEMBL
Match: A0A1S3C541 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497128 PE=4 SV=1)

HSP 1 Score: 379 bits (974), Expect = 1.53e-131
Identity = 212/236 (89.83%), Postives = 226/236 (95.76%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
           MATSFLSTANTFHSSTPSSSSSSSS S  SPPLLRSRF CL C NN +RLVICK ++DPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYS--SPPLLRSRFGCLYCHNNTKRLVICKSSSDPP 60

Query: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           S+IP LTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QG
Sbjct: 61  SKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQG 120

Query: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
           VISSANKEKGYLQE+VYKLSKVGQAID+NDF+TASSVLGGS+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSS 180

Query: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           PEEKSEVDAFNSSLASLISSVT++DV+SSKTAFVASASA EKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

[Close]

BLAST of Csor.00g085720 vs. ExPASy TrEMBL
Match: A0A0A0LI29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1)

HSP 1 Score: 379 bits (973), Expect = 2.50e-131
Identity = 212/238 (89.08%), Postives = 226/238 (94.96%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSS--SPPLLRSRFSCLNCRNNARRLVICKGNND 60
           MAT+FLSTANTFHSSTPSS SSSSSSSSS  +PPL+RSRF CL C NN +RLVICK ++D
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPSQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLER 120
           PPS+IP LTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLS 180
           QGVISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           SSPEEKSEVDAFNSSLASLISSVT+NDV+SSKTAFVASASA EKWTALAGLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238

[Close]

BLAST of Csor.00g085720 vs. TAIR 10
Match: AT4G02530.1 (chloroplast thylakoid lumen protein )

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-49
Identity = 132/241 (54.77%), Postives = 161/241 (66.80%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNND 60
           MA S L  ST N F S+T SSS  +  + S             N +N     ++ K    
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG------------NSKNQTSSSLLWK---- 60

Query: 61  PPSQIPTLTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKR 120
                    +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR
Sbjct: 61  ---------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKR 120

Query: 121 LERQGVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFN 180
           +ERQ V++SA KEKGYLQ++VYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF 
Sbjct: 121 IERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFT 180

Query: 181 KLSSSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKG 237
           KLS+SPEE +EV+AFNSSLASLI+SV +ND++SSK AFV+SA A EKWT L GL+ QLKG
Sbjct: 181 KLSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKG 216

The following BLAST results are available for this feature:

BLAST of Csor.00g085720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22773	3.9e-48	54.77	Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Csor.00g085720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599393.1	1.45e-148	100.00	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022946074.1	5.63e-146	99.15	thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita moschata]	[more]
KAG7030378.1	1.10e-145	99.58	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_023545851.1	1.63e-144	97.88	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub...	[more]
XP_022999175.1	1.22e-142	97.03	thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita maxima]	[more]

BLAST of Csor.00g085720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2S1	2.73e-146	99.15	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KEL3	5.93e-143	97.03	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7V8J2	1.53e-131	89.83	Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C541	1.53e-131	89.83	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LI29	2.50e-131	89.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1	[more]

BLAST of Csor.00g085720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02530.1	2.8e-49	54.77	chloroplast thylakoid lumen protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
IPR038862	Chloroplast thylakoid lumenal protein MPH2	PANTHER	PTHR35742	THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g085720.m01	Csor.00g085720.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010206	photosystem II repair