Csor.00g085330 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g085330
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 10621311 .. 10627028 (+)
RNA-Seq ExpressionCsor.00g085330
SyntenyCsor.00g085330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternal
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCCATCGTTGCCGCGGCCCACCGGCGGCAACAACGATCAGCCGCCACTTTGCCAGCCATTGACGAAGATCGCACGGTTGTAGTGTTTTAAATACAAATTCAAAATCACTTTTATTTTTTAATTTACTTTTATTTTTAATAAAATATTTTAAAATGAAAAGAAAAAAAAGGGGAAAAAAGAGGAAGGAAAGGAATGTGACCTTGGGGTTGGTTTGTTGGTTGGTATGAGAGATCACATCGTTGAGTCTGAGAAGGTGTGAGTTAGGTTGGTTAGGCATTAATGGCTGTTTGGGCTCAAAAGTGGCTTCGATTTGGAAGCACGAACTGGAAGCTCCGGAATTCATGAAACACGAAAACACTTTCCCAATGCCCACCGCCTTTCCCATTCCCAACGCTCTCTCTCTCCCCTTCCTTAACTCAGATCAGATCATCAAAACCAAATCAATACATATTTATATATACACACACACAATAAACAGATATTTAATCTTGTTCGGTAACGATTCTAAATCTACCACTAACAGATATTGTTCACCTGGGTTTATTACGTGTCGTTGTTAGTATTACGGTTGTAAAACGTGCATGGTAAGAAGAGATTTTCATATCTTTTATAAGGAGTACCCTCTGTCTCATTTCTATCTGACCCAATCGTCTTCTGATAACAGCGGACTTGCGATTATGTATCACTCACTTCCCAACGACAAGTGAGTTAAGCTTATTCGTTCTTGCATCGCCTACGGCTAACTGATGTATGCTCGAGCCTTTGACCCCGTTTCGAGAAGAAAGTTTTTAGAAAACGGGAGTAGAGAGATTTCGAAAAGGAGTTTTGAAAGCCATATTTGAGAAATTGAAATTTGTGTTATATGAGAATGTAAACAAAACGCAACAATAGCGCCTTACTGCTATAACTATCGGGTAGGAAGTATGAGATCACGTAATCTTACATATACTTTAAATATTTTTTTAATAAATTAATAAAAATATTTGTGAATTTTGCACTTTATCCTATAAAAAATATTTATAAACTTTCAAAAATTCCAATAATACCAATAAAAAAAAACAAAATTATAAAAAATATTCATAAGCTTAAAACAATTAAAATTAAGTTTACAGGTTAGAATGTTAATAATTAGTTAATACATTCGAGTTTTTAAAAATTTGTTCGTACAATTTTTTAAAATTAAAAAAAAAAAACACATTAAAATATTTTTAAAAACTTACAAAATGTCAGACTATTTTCGTCCATATATTAACTATAAAAATAAAAAACAATTAAATTTCGTTTTATAAAGGTTAAGGGTGTTTACCCTACCTTTAAAATTTTATGAGTGTTTTTTAAGCATAGTACTAGCGATAACTGCAGTAGTGAAACTTTTTAACGTTTACAGGTATTTTTTGAACACTGCAAAAAATTTAAGGGTAATTTGGAATAAAGTATTAACCGTTTTCATCCAAATGGTAAATATATTTTTTTTGAATTTTAAAAAATAGAGGGTTATTAATTATTTGTTCCTATGTACTAATTAATGATAATATGCTTAATTTTAACTAATAATATTTTATTAAATCGATTTGAAAAAAAAAAAAAACTTTATTTTATGAAATCACATGCTGGTTTTGAGCTCACAGATCAAGCATTAAAATCCTTCAAGACTTTATTGCATATTCATAACATATTTAATCCATCACTTGATCCAATAAATGTCGGCTCCATAGCTTATTATAAATCTCGATTTACATAATTTTTATAGGCCACAAAACTAACGAATATAAACTATCATTAATTAAAATTTGAACACATTTAATGTGATTTTTTTTTTGTATATAAGGTGAAATATTGTATTATTATTATTATTTATATATTTTTTAAAATATAATTTTGTATTTTAAAATTTCAAATTCAAAATTTAATAACCTTAATATTTTAACTTATTTCAAAATATAAAATATTATTTATTAATTTTAAAAATTTCATGGTATTTTGAGAAATGTGCTTACCTGATTATTTTATTAATATCTTTCATTTTTTTGAAATCGGGACTTTCACATTTTGGTCGATATCAGCATTTTAAATCTACTGAATTTCAAAATTCGTTGGTTCCCCGAGACAAATATAAATACTGAGTCCTCGATCCGTGTTTCTAGAATTTGATTGGAAGATTCCTAATGTTATTGTTATTATTAATATTTTGTTTTGAAATATAGGGCAGGTTGGTCCATGTGCAAATCATTATAATAATTCAAAGATGCTAAAGGGGCTAATTTAAAATAAAAATAAAAATATGCCCAAAATATTTTGCAACATGCCCAGCCACGTTAGTGCACGTGCTACTCACGTGAGAATAATTGCCAAATGGCATGCGCGGCCGGATTATGTATTTAAGAAGTGTGTGTTTTATGTAGTAATTTTGGTGTATTTTATTTTGCAACTTTAAATATATACTTAGGATTTTCAACTTTAGGTTTATATAAATTAAATGTAACGAGTGCTTATAAAAATAAATTATTCTGTTGAATAAAAGTGTGAAAATACTATTCTATCCTTGTTTCTTTATAATAACGATAGTATAAATATATTAAATTTCTACTAAGATTTTTTAACGCGAGTGAGTTCAAAATCTACCTTAAAGGTAAATCAATGTTACCGTTCATAGCTAAAATGTCAACGAAACACGAGAAAAAAAGAATAAAATATCCCTAATGTAGATATAATATAATTAATAAGCATTTTATAAAAAGTATAAAAGAATTTCTTATTAATTTAAGTAATATTTGTCTCTTTGAAAATATTTATCTGATTGATATTTTAATTTTAATTTTCGTAAATTTGAGACATTTAACTATTTCTTTAATTTTGAATTAAATATAGTTTAATTAATTAATCAAGGGAATGATTAAACGTCACGTGCCCTCAACTATAGAATATTAATTTATTTGAACCCAACCTAATTCAAATTGTACCATCGGGGCATCAATTTTTTTGAGTCCTAGATTTAAATTTAAAGATTAAATTAAATCGAAATTTTAAATAGATTAGTTAACTTATAAAGATTAATTATTTTAAATCTCAAAATAAAATTAAATAATTAAACAAAATAAGATTAATTAATTTAAATTTTCGAATTGTGAATGAATACAAATACATGGACCTATTTTCGTAAATTCCCACCGCCAGCTCTTTGAATAGACGACATTGATGGAGCATCCTAGTTCTTCAAGATGGGAAGTACCTCCAACCCGAGCCCATAACTAATGGGCTTAAAGTATCAAAATTGGGCCTGATGGGCTTCAGTTACCAATTTGGCAGACACTTCGCCGACTCGTCGTCATAATACTTCATCTGTCTCCATCCAGTTTCTGACATGTCGACCCATTTGTTACGTTCGGCGCAGTAATAATGACCAAAATGGTAATTATAGGAAAAATGGAGGGCAAATAATTAGACAACAGTATCCATTTCGATTTGACTGTCACACCAATTTCGACAAAGGATAAAGACTAACAGTCCAATGCCATGGAAAAGTCGGGCGCGCGCGCGCGAGAAACGTGGGAACAAGATAATTACTCTACACCCGAGAACAGCGTAACATACCCCCAGATCCATTCCTTTTCTCTCTCCTCCGTTTCTTCTTCCATCTCTCTTAAGTTTTTTAGGCAAAAGCAGGAGCAGTTTTCTTTCAGCTCTTAGCTGGCCGTAGATACCGATACTGAAGAAAAAGGACCTGCAACTCTCTCTCTCTCTCTCTCCGTTTTCGTTCTTACTTTGTTCATCAGCTGTTGGTGGATCGATTGAGTTTTATCGTCAGCTTGAAAGGCTGGTGAACAAGAAGAAGTAATCGTGGTTGTCTGCTGATTTCGGTCCGTTTCGGTTTTCGTTTCAATCTTCTACTTGTCTAGGGTTCTACGGACGTTATTATTTCTGATTCTACTCGAGTTGTTCAACTGAGGTGAGGTTTTATCTTTTCAGATCCGCTGTTTTGATTGTTGGACTGGTGGTTGTTAAATTGAGGTTTTGTTTGATTGCTAAAAAAGGAATGTATATTTGAAATCGTTGTTTGTTGACTTCTCCAGTTATGTATTTGAATTTCTGTAAGTTTGTTTTTTTTGAATTTTCTGCTCTTGAAATGAACACTGGAGAAGACGTTGTATTCACGTTTTTAATTTATATGTTTCTTGAAACTTATAGGATAGGCAGTGATTTTGGCCATTTGAGCTCTTCTGTTTGGAGTTTATTGCTGTTTGTTTTGGCTAACATTGATCTCAATTGATGTAGGTTGACACATATGGCGAATCGAGTGAAGGAGGATGAGAAGAATGAACGGATTATTCGCGGGTCTTCTGAAACTGCAGGAGAATCGCCGGTGCATCAACTGCAACAGTCTGGTACACTATTACTACCTTTCTCAGTGTTTTCTCGAACTAGATATCACGTAGCTTCACTATATGAAGCTAAATATTCGTTTTGCTGTATTGAAATTCCACAGTCGTTCTTTTGGCCTGGTCTCGATTTAGCTTCTTTGAGATCTTAGTTCCACGAAAAGAAGTTAGAATGATCATTGAGAAGTCACAAGACCTTTGGTTGTAATTTTCTCGTGAGATTCAATCAATTTTTATTGAAAACACTTGCAGGGACCACAGTACGTCTCTGCACAACTTTCTGGGACGTTTGTTTGCACAACCTGTAGTGGAATACAGTAAGTGCATCTGTCTTATGTTTGGTTCTTGTATTTTCGATTTTTTCCAAAAAGACACGCAAATCAATGGTCATATATTCCATTAGTCTTATGGAGATACTATTTCTTGTATCTGTTCATTTAATTGATAAAAACTTATTTGATTTGACTCTAAAATAGCCGCGAGTTCACACACCCGAGTAAAATCAGTATCAATGGCCAAATTTACTTCTCAAGAAGTTAGCGCTCTTCAAGAAGGGAGGAAATCAGGTACATGCTGCACATGGATGGATACTTTCATTTCTCAGAGATTCACCTTTACACTGTTTTCAGAATCATGATTTATTTCCTTTTTTTCTATTTTCAATTTCAAAGGCGTGCAAAGGAAAATTTACTTTAAAGAGTTGGATCCACAACGTCATTCTTTTCCTGAACAGCAGGTCATTTTATTTTACTGTTTTTATCATTATCTTTATTATTTTTAATGCTATACCATTATGTTAGTCCAAATGGATGTCGTTCTGAGAGAAACTTTTCCTTCCAGTAACGTTATGAGACTCAGAGACTTCATCAAGCATGTTTTATGTGGACAGAAGATATAGTGGCGATAAGAATTTTGACAAGGCCACCTAGGGGGAAATCGGTGAGATGCCTCAAACCTTTCTTTTCTAATTTCTCTGAGATATATCTGAAGTTGAACGCAGTAACTTTTATCACTTGATTGTTTGGATTATATTATTTTATTATGATTCTACACACAAAGTAATCTTAATAGAATTCATCTGTGATCTTATACAGGGTGAGAAAGAGGACTTTTATGAAACCAGGAGAAACAGATACATATCAAGGTGGTTCTAGAAGCCCACCATATGAAGGACCGCCGTTACAATGAAAAGTCTAGTCCTGGGGGAAAGAAAACTTTGATGAGAGAAGAAGTCCAGGGTCTGATCATGATAATCGGCAGTTTGGTGATTTAGGAGAAGTCCTGCTCGTCGCTGAGGTTGTAAGTGATTGGCGTCGAGAAGATAGGTTTGGAAATG

mRNA sequence

ATGCATTCCATCGTTGCCGCGGCCCACCGGCGGCAACAACGATCAGCCGCCACTTTGCCAGCCATTGACGAAGATCGCACGGGTTCTACGGACGTTATTATTTCTGATTCTACTCGAGTTGTTCAACTGAGGTTGACACATATGGCGAATCGAGTGAAGGAGGATGAGAAGAATGAACGGATTATTCGCGGGTCTTCTGAAACTGCAGGAGAATCGCCGGTGCATCAACTGCAACAGTCTGTCGTTCTTTTGGCCTGGTCTCGATTTAGCTTCTTTGAGATCTTAGTTCCACGAAAAGAAGGACCACAGTACGTCTCTGCACAACTTTCTGGGACGTTTGTTTGCACAACCTGTAGTGGAATACAGGTGAGAAAGAGGACTTTTATGAAACCAGGAGAAACAGATACATATCAAGGAGAAGTCCTGCTCGTCGCTGAGGTTGTAAGTGATTGGCGTCGAGAAGATAGGTTTGGAAATG

Coding sequence (CDS)

ATGCATTCCATCGTTGCCGCGGCCCACCGGCGGCAACAACGATCAGCCGCCACTTTGCCAGCCATTGACGAAGATCGCACGGGTTCTACGGACGTTATTATTTCTGATTCTACTCGAGTTGTTCAACTGAGGTTGACACATATGGCGAATCGAGTGAAGGAGGATGAGAAGAATGAACGGATTATTCGCGGGTCTTCTGAAACTGCAGGAGAATCGCCGGTGCATCAACTGCAACAGTCTGTCGTTCTTTTGGCCTGGTCTCGATTTAGCTTCTTTGAGATCTTAGTTCCACGAAAAGAAGGACCACAGTACGTCTCTGCACAACTTTCTGGGACGTTTGTTTGCACAACCTGTAGTGGAATACAGGTGAGAAAGAGGACTTTTATGAAACCAGGAGAAACAGATACATATCAAGGAGAAGTCCTGCTCGTCGCTGAGGTTGTAAGTGATTGGCGTCGAGAAGATAGGTTTGGAAATG

Protein sequence

MHSIVAAAHRRQQRSAATLPAIDEDRTGSTDVIISDSTRVVQLRLTHMANRVKEDEKNERIIRGSSETAGESPVHQLQQSVVLLAWSRFSFFEILVPRKEGPQYVSAQLSGTFVCTTCSGIQVRKRTFMKPGETDTYQGEVLLVAEVVSDWRREDRFGN
Homology
[Close]
BLAST of Csor.00g085330 vs. NCBI nr
Match: KAG6599431.1 (hypothetical protein SDJN03_09209, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313 bits (802), Expect = 1.66e-107
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MHSIVAAAHRRQQRSAATLPAIDEDRTGSTDVIISDSTRVVQLRLTHMANRVKEDEKNER 60
           MHSIVAAAHRRQQRSAATLPAIDEDRTGSTDVIISDSTRVVQLRLTHMANRVKEDEKNER
Sbjct: 1   MHSIVAAAHRRQQRSAATLPAIDEDRTGSTDVIISDSTRVVQLRLTHMANRVKEDEKNER 60

Query: 61  IIRGSSETAGESPVHQLQQSVVLLAWSRFSFFEILVPRKEGPQYVSAQLSGTFVCTTCSG 120
           IIRGSSETAGESPVHQLQQSVVLLAWSRFSFFEILVPRKEGPQYVSAQLSGTFVCTTCSG
Sbjct: 61  IIRGSSETAGESPVHQLQQSVVLLAWSRFSFFEILVPRKEGPQYVSAQLSGTFVCTTCSG 120

Query: 121 IQVRKRTFMKPGETDTYQGEVLLVAEVVSDWRREDRFGN 159
           IQVRKRTFMKPGETDTYQGEVLLVAEVVSDWRREDRFGN
Sbjct: 121 IQVRKRTFMKPGETDTYQGEVLLVAEVVSDWRREDRFGN 159

[Close]
BLAST of Csor.00g085330 vs. NCBI nr
Match: KAG6599443.1 (putative ADP-ribosylation factor GTPase-activating protein AGD14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 1.19e-15
Identity = 54/94 (57.45%), Postives = 60/94 (63.83%), Query Frame = 0 

Query: 28  GSTDVIISDSTRVVQLRLTHMANRVKEDEKNERIIRGSSETAGESPVHQLQQSVVLLAWS 87
           GSTDVIISDSTRVVQLRLTHMANRVKEDEKNERIIRG         + +LQ++   +  +
Sbjct: 11  GSTDVIISDSTRVVQLRLTHMANRVKEDEKNERIIRG---------LLKLQENRRCINCN 70

Query: 88  RFSFFEILVPRKEGPQYVSAQLSGTFVCTTCSGI 121
                        GPQYV      TFVCTTCSGI
Sbjct: 71  SL-----------GPQYVCTTF-WTFVCTTCSGI 83

[Close]
BLAST of Csor.00g085330 vs. NCBI nr
Match: XP_021607971.1 (probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Manihot esculenta])

HSP 1 Score: 52.0 bits (123), Expect = 2.73e-04
Identity = 35/75 (46.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 48  MANRVKEDEKNERIIRGSSETAGESPVHQLQQSVVLLAWSRFSFFEIL-VPRKEGPQYVS 107
           MA+RVKEDEKNERIIRG  +             V+L       FF ++ +   EGPQYV 
Sbjct: 1   MASRVKEDEKNERIIRGLLKLPENRRCINCNGLVLL------QFFAVIEIQGFEGPQYVC 60

Query: 108 AQLSGTFVCTTCSGI 121
                TFVCT CSGI
Sbjct: 61  TNF-WTFVCTNCSGI 68

[Close]
BLAST of Csor.00g085330 vs. NCBI nr
Match: KAG6586420.1 (putative ADP-ribosylation factor GTPase-activating protein AGD14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 51.2 bits (121), Expect = 5.02e-04
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 44  RLTHMANRVKEDEKNERIIRGSSETAGESPVHQLQQSVVLLAWSRFSFFEILVPRKEGPQ 103
           +L +MANRVKEDEKNERIIRG         + +LQ++   +  +             GPQ
Sbjct: 15  KLAYMANRVKEDEKNERIIRG---------LLKLQENRRCINCNSL-----------GPQ 71

Query: 104 YVSAQLSGTFVCTTCSGI 121
           YV      TFVCTTCSGI
Sbjct: 75  YVCTNF-WTFVCTTCSGI 71

[Close]
BLAST of Csor.00g085330 vs. ExPASy TrEMBL
Match: A0A2N9GTP7 (Arf-GAP domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33659 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.46e-04
Identity = 60/206 (29.13%), Postives = 69/206 (33.50%), Query Frame = 0 

Query: 48  MANRVKEDEKNERIIRGSSETAGESPVHQLQQSVVLLAWSRFSFFEILVPRKEGPQYVSA 107
           MANRVKEDEKNERIIRG                ++ LA +R      +     GPQYV  
Sbjct: 1   MANRVKEDEKNERIIRG----------------LLKLAENR----RCMNCNSLGPQYVCT 60

Query: 108 QLSGTFVCTTCSGI---------------------------------------------- 159
               TFVCTTCSGI                                              
Sbjct: 61  NF-WTFVCTTCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNKPAKEIYFKEWDSQRNS 120

The following BLAST results are available for this feature:
BLAST of Csor.00g085330 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g085330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599431.11.66e-107100.00hypothetical protein SDJN03_09209, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6599443.11.19e-1557.45putative ADP-ribosylation factor GTPase-activating protein AGD14, partial [Cucur... [more]
XP_021607971.12.73e-0446.67probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Man... [more]
KAG6586420.15.02e-0444.87putative ADP-ribosylation factor GTPase-activating protein AGD14, partial [Cucur... [more]
BLAST of Csor.00g085330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9GTP74.46e-0429.13Arf-GAP domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33659 ... [more]
BLAST of Csor.00g085330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g085330.m01Csor.00g085330.m01mRNA