Csor.00g084340 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCTTCCTCTTTGGCAGCCGGAAAACTCCTGCAGGTCCATTATGTTCTTTTACCTTCTCTAATTGTGCATATTCTGGAGCTTTGTTCTTAATCATAGCGTGATTGCTTGTGATGAATTTCTAACTCTGGAGTCTAGTCGTATAACGTATGTTTGATGTGGATGAAATTTTGCCTTTTACCTTCTCAATTTTGCATTCGTCGGAGCTTTGTTCTTGTGATAGCGTGATTTTTTGTGTGGATTTCTAAGTCTAGAGCTCAGTCCTGTAAACGTCATTTTGATGTGGATGAAATTTCTTTGACGGTAATTTCAGTACATCTAATTTTACTCGTGATTTGTATGATTGTAATTTGTTTTGGTTTTCTGCGCAGAGCTTTTGCGGGAGAACAAGAGGATGCTTGATAAGTCCATAAGAGAAATTGAACGGGAAAGACAAGGCTTACAGTCTCAGGAAAAGAAGTTGATTGTCGAGATAAAGAAAAATGCTAAACAAGGACAGATGGTGAGTTAAACAATTTAGAACTTGTTCTTTGACATCGACACATTTCAGTGACGGGGTTTCTATAGCTCTACGGGATGGAAGTGTGCTTCTACTTCTTTTCTTTTGTTTCTTTAGAAAGGGCGATGGATTCTTGGTTGGAACCATCAACTCCGCACAACTTCCTTGATTCCTTTGTTTTTGTTTTTTCCAGGGAGCAGTTAAAATAATGGCCAAAGATCTCATCAGGACACGACATCAGATTGAAAAATTTTATAAACTAAAATCACAGCTACAGGGCGTGGCTTTGAGAATTCAGGTATTCTATGTGCACCTTTCTCCGAAACTTTTGGATTATAGCTACAGGGCGTGGATTTGAAGTTGATGGGACGAAGAGGTATTTATTCTTGATAGACGAGCTCTAAAAGCCTAAAATGAAAGTTTAAGGTTATAACTATCTAGAGCTTATTAAGCTATGCATTTGCTTGGTTCAAATTCTAACTGAGGCTCGCTTATATCTGTGCTAAGAAACGAAACATTTTGCAAACCATACAGTTCTCTTGCCGCATGATTAAAGAACAAACAACAAAATGCTTTAGGATTAGTTTAATTTCACTTGCATCTTCTAATTTTTTTGTACAGTAAAAGGAAGGTTTGAAAAAAATTGGGATTTTGGGGCAAGAGTATTTTCTTGCTTCAAGTTTATATGCAAATTGGAATTTGAAGTAGTTTATTCAAATCACTTTTTAGAATAATGGATTTGATTCCATTAAATCTTATCTGCCTCTTTAGGGTTTGTTTCTAGATTGATTTTTCATAACAAAGTTGGAAAAACTATCTTTTCAGTTCTTTGTGATCTCAGAAACGTGGGAAGGCTGTTTTTAGTTTGTCTGCCTCTTGTTTACTTTTCATGGTTTGTCTAATGTCGCATTCTGTATCACTGTCCATGAAAATACACTGTATAAACATAACTTTCCATTGTTTATATTTACGAAACAAGTGGATGTATCATTAGAATGTTTTCTATTTGAAGAAAACTGTTCATCACTGTACGAGAAGCTTTCAGCATTAAACGATTAATTTTGGAAATAGAATTTTTCTTTATAAATTTTGGAAATGAACTCTTACTTTCTTTTTGAGACCATAAAGATATAAAGTTGTTTTATTTAATCAATTGACACGTACAATTTCTGCATTTGTGATTGTTCAAATTTTGCTCCAAATTGTTTGCTTCCTGCAGACGTTGAAATCAACTCAAGCTATGGGAGAAGCCATGAAAGGCGTTACTAAGGCGATGGGCCAAATGAATAGGCAGATGAACTTGCCGGCATTACAGAAGATAATGCAAGAGTTTGAGAGGCAGAATGAGAGGATGGAAATGACATCTGAAGTAATGGCAGACGTTCTTGATGATGCTTTAGAAGGAGATGAAGAAGAGGAGGAGACAGACGAGCTTGTGAATCAGGTGCTCGATGAGATTGGAATTGATATCAACTCAGAGGTAAATATGCTTGCACACATACAGATTTTTTCATAATGGTTCATATCTTGTCATGGGAAAAGGTAATTTAAACACAATCGTGATTGTTTTTTTGTTCTCTCTCACATGCAGCTTGTGAATGCACCCTCAGCTTCTGTGTCAGTTTCAACTGCTAATAATAGGGTTGCCCAAGCAGAAGCCGAAGATACTGGAATTGACAGTGATTTACAGGCTAGGCTGGATAACTTGAGAAAAATGTAGGTTTTTCTATTATGCGAAATTAATAACTCTCAGATAATAGACATAATAAATCATGTATTGTTTATAGTTGAACTCTATGTATTTGAATACTACATTGACAAGTTTGATCTCTTGTTTGGAGAAGAGAATGAATTTAGCACTTGGGATTAGGTAATTCTCTCATTACAAATTTAAGCCTTCAAGGAAGACAAAGGTTTGGATTGATAGTATAGATTTGCATGAGATTAACCATTCCACTTCTTTGTCAAGTTGTTCTAGAACTAGAAGCCTTGAAGCTTTCTGAGTGCATATCGAGATTTTCTTATTTCGATATGCAGTTGAATTATTAAACCATGTTTTCTGGCCACGCCTTGCTCCTAATTACATGAGGAGAAAGCTCAATCTGGAGACTGTTAATGTCTACTACCTGACAAATCACCGCCTCTGCAGTCCGACAAGCTACATGGTGGACTGGAGTCCGACAGAGTGGGCACTCTGA ATGAGCTTCCTCTTTGGCAGCCGGAAAACTCCTGCAGAGCTTTTGCGGGAGAACAAGAGGATGCTTGATAAGTCCATAAGAGAAATTGAACGGGAAAGACAAGGCTTACAGTCTCAGGAAAAGAAGTTGATTGTCGAGATAAAGAAAAATGCTAAACAAGGACAGATGGGAGCAGTTAAAATAATGGCCAAAGATCTCATCAGGACACGACATCAGATTGAAAAATTTTATAAACTAAAATCACAGCTACAGGGCGTGGCTTTGAGAATTCAGACGTTGAAATCAACTCAAGCTATGGGAGAAGCCATGAAAGGCGTTACTAAGGCGATGGGCCAAATGAATAGGCAGATGAACTTGCCGGCATTACAGAAGATAATGCAAGAGTTTGAGAGGCAGAATGAGAGGATGGAAATGACATCTGAAGTAATGGCAGACGTTCTTGATGATGCTTTAGAAGGAGATGAAGAAGAGGAGGAGACAGACGAGCTTGTGAATCAGGTGCTCGATGAGATTGGAATTGATATCAACTCAGAGCTTGTGAATGCACCCTCAGCTTCTGTGTCAGTTTCAACTGCTAATAATAGGGTTGCCCAAGCAGAAGCCGAAGATACTGGAATTGACAGTGATTTACAGGCTAGGCTGGATAACTTGAGAAAAATTCCGACAAGCTACATGGTGGACTGGAGTCCGACAGAGTGGGCACTCTGA ATGAGCTTCCTCTTTGGCAGCCGGAAAACTCCTGCAGAGCTTTTGCGGGAGAACAAGAGGATGCTTGATAAGTCCATAAGAGAAATTGAACGGGAAAGACAAGGCTTACAGTCTCAGGAAAAGAAGTTGATTGTCGAGATAAAGAAAAATGCTAAACAAGGACAGATGGGAGCAGTTAAAATAATGGCCAAAGATCTCATCAGGACACGACATCAGATTGAAAAATTTTATAAACTAAAATCACAGCTACAGGGCGTGGCTTTGAGAATTCAGACGTTGAAATCAACTCAAGCTATGGGAGAAGCCATGAAAGGCGTTACTAAGGCGATGGGCCAAATGAATAGGCAGATGAACTTGCCGGCATTACAGAAGATAATGCAAGAGTTTGAGAGGCAGAATGAGAGGATGGAAATGACATCTGAAGTAATGGCAGACGTTCTTGATGATGCTTTAGAAGGAGATGAAGAAGAGGAGGAGACAGACGAGCTTGTGAATCAGGTGCTCGATGAGATTGGAATTGATATCAACTCAGAGCTTGTGAATGCACCCTCAGCTTCTGTGTCAGTTTCAACTGCTAATAATAGGGTTGCCCAAGCAGAAGCCGAAGATACTGGAATTGACAGTGATTTACAGGCTAGGCTGGATAACTTGAGAAAAATTCCGACAAGCTACATGGTGGACTGGAGTCCGACAGAGTGGGCACTCTGA MSFLFGSRKTPAELLRENKRMLDKSIREIERERQGLQSQEKKLIVEIKKNAKQGQMGAVKIMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPALQKIMQEFERQNERMEMTSEVMADVLDDALEGDEEEEETDELVNQVLDEIGIDINSELVNAPSASVSVSTANNRVAQAEAEDTGIDSDLQARLDNLRKIPTSYMVDWSPTEWAL Homology
BLAST of Csor.00g084340 vs. ExPASy Swiss-Prot
Match: Q9SKI2 (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS2.1 PE=1 SV=2) HSP 1 Score: 341.3 bits (874), Expect = 8.9e-93 Identity = 191/224 (85.27%), Postives = 207/224 (92.41%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy Swiss-Prot
Match: Q6IP52 (Charged multivesicular body protein 2a OS=Xenopus laevis OX=8355 GN=chmp2a PE=2 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 3.2e-58 Identity = 122/219 (55.71%), Postives = 168/219 (76.71%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy Swiss-Prot
Match: Q6DFS6 (Charged multivesicular body protein 2a OS=Xenopus tropicalis OX=8364 GN=chmp2a PE=2 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 9.2e-58 Identity = 121/219 (55.25%), Postives = 167/219 (76.26%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy Swiss-Prot
Match: Q54DB1 (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum OX=44689 GN=chmp2a2 PE=3 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 2.1e-57 Identity = 123/191 (64.40%), Postives = 160/191 (83.77%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy Swiss-Prot
Match: O43633 (Charged multivesicular body protein 2a OS=Homo sapiens OX=9606 GN=CHMP2A PE=1 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.3e-56 Identity = 122/221 (55.20%), Postives = 166/221 (75.11%), Query Frame = 0
BLAST of Csor.00g084340 vs. NCBI nr
Match: KAG6575451.1 (Vacuolar protein sorting-associated protein 2-like 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 426 bits (1096), Expect = 8.08e-150 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
BLAST of Csor.00g084340 vs. NCBI nr
Match: XP_022954248.1 (vacuolar protein sorting-associated protein 2 homolog 1-like [Cucurbita moschata] >XP_022992389.1 vacuolar protein sorting-associated protein 2 homolog 1-like [Cucurbita maxima] >KAG7013995.1 Vacuolar protein sorting-associated protein 2-like 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 390 bits (1003), Expect = 7.03e-136 Identity = 219/220 (99.55%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of Csor.00g084340 vs. NCBI nr
Match: XP_008462317.1 (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like [Cucumis melo] >XP_038897571.1 vacuolar protein sorting-associated protein 2 homolog 1-like [Benincasa hispida]) HSP 1 Score: 389 bits (999), Expect = 2.86e-135 Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Csor.00g084340 vs. NCBI nr
Match: XP_023547513.1 (vacuolar protein sorting-associated protein 2 homolog 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 387 bits (994), Expect = 1.65e-134 Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Csor.00g084340 vs. NCBI nr
Match: XP_004141696.1 (vacuolar protein sorting-associated protein 2 homolog 1 [Cucumis sativus] >KGN45498.1 hypothetical protein Csa_016370 [Cucumis sativus]) HSP 1 Score: 386 bits (991), Expect = 4.74e-134 Identity = 216/220 (98.18%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy TrEMBL
Match: A0A6J1JXE8 (vacuolar protein sorting-associated protein 2 homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488711 PE=4 SV=1) HSP 1 Score: 390 bits (1003), Expect = 3.40e-136 Identity = 219/220 (99.55%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy TrEMBL
Match: A0A6J1GQK3 (vacuolar protein sorting-associated protein 2 homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456560 PE=4 SV=1) HSP 1 Score: 390 bits (1003), Expect = 3.40e-136 Identity = 219/220 (99.55%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy TrEMBL
Match: A0A1S3CGM4 (vacuolar protein sorting-associated protein 2 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103500700 PE=4 SV=1) HSP 1 Score: 389 bits (999), Expect = 1.38e-135 Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy TrEMBL
Match: A0A0A0K7U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450570 PE=4 SV=1) HSP 1 Score: 386 bits (991), Expect = 2.29e-134 Identity = 216/220 (98.18%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Csor.00g084340 vs. ExPASy TrEMBL
Match: A0A6J1KC98 (vacuolar protein sorting-associated protein 2 homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494308 PE=4 SV=1) HSP 1 Score: 381 bits (978), Expect = 2.19e-132 Identity = 212/220 (96.36%), Postives = 218/220 (99.09%), Query Frame = 0
BLAST of Csor.00g084340 vs. TAIR 10
Match: AT2G06530.1 (SNF7 family protein ) HSP 1 Score: 341.3 bits (874), Expect = 6.3e-94 Identity = 191/224 (85.27%), Postives = 207/224 (92.41%), Query Frame = 0
BLAST of Csor.00g084340 vs. TAIR 10
Match: AT1G03950.1 (vacuolar protein sorting-associated protein 2.3 ) HSP 1 Score: 154.8 bits (390), Expect = 8.3e-38 Identity = 93/215 (43.26%), Postives = 142/215 (66.05%), Query Frame = 0
BLAST of Csor.00g084340 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein ) HSP 1 Score: 144.8 bits (364), Expect = 8.6e-35 Identity = 87/221 (39.37%), Postives = 140/221 (63.35%), Query Frame = 0
BLAST of Csor.00g084340 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein ) HSP 1 Score: 132.5 bits (332), Expect = 4.4e-31 Identity = 80/198 (40.40%), Postives = 127/198 (64.14%), Query Frame = 0
BLAST of Csor.00g084340 vs. TAIR 10
Match: AT5G22950.1 (SNF7 family protein ) HSP 1 Score: 77.8 bits (190), Expect = 1.3e-14 Identity = 57/217 (26.27%), Postives = 119/217 (54.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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