Csor.00g084080 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g084080
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr17: 7158665 .. 7160127 (-)
RNA-Seq ExpressionCsor.00g084080
SyntenyCsor.00g084080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCGGAAGTGGGCCAGTCCAAGTAAAATGGGCTGAATCATGGGCCGGGCTGCAAAATTTGTGGGCCAAAAGCTTAGGCTATCTTTTTTTTAAAAGAAATTAATTTGTTTATTTATTATTAACTAATTCAACAACAATAATAATAATTTAAATATTTTAATTTTACAACTACTCCCAAATCTCAACATTCCTCCAAAACCCAAAAGAATATAGAGTGTGGTGGCACACATGCGAAGTCCACCCCGATGGACGGCTACCGGTGGCGCTCGAAAGCGTTGAATGTGATCCCACCGTCCAACCTTTTTCTTACGAGGCCTGGGGCCCAGTGTCTAGATGGGCGGCCGGTGGACCCCGCCTTGGCCCCACTTCCAACTCCTTAGTCGTACAGCGCAACTCCAACGCGTCGGGTCCACCAAATTCCTTTAGTGTACCTCCGATTTTACGGTTTTACCCCTTCAGAATTAACCGGGACCAAGGGTCAGCACCCGGTCGCCGGTGGAATTCGTAAGAGCCGCCGTTTATAAAATTAAAAGAAATCAATTAATCGAAGGTCGATAAATTAAAGATTTATTTTACTTTAAAAAGAAAAAACATTGAACCATGTAAATCTTCCCATTATAAAAATTAAAAATTGCAACAATTGCCCCCTAAATTTTGAGAAAATTACTAACGATCACTCTAAAAAAATTAAATTATTATAATTAAATTCTTCAAAATTATTAATTATTAGAGATATTAAATCTAAATTGTTAAATAATATTTAATTTCATGACTAAATTATTATGAATTAGATAATACCAAATTAATTATAATTTTATAAAAGTAAGATCTTGGGGCTAAATTATAATTTTACAAAAATTTAGGGACTAATTTATTATTTTAGTTCATAATTAGATAATGCATTAATTATTTAAGATTTTATTTATAAAAATATTTAAATGCATTTATTGAGACACTAATCCTTAATGAAATAATGAATTTACTTGTCAATTAATTATCATTTTATTTTTAAAATATATATATACATAAAAAAGTAACAATATGATTTAAAGTAGAAAAATTAATTAGTTAAAAAACAAAAAATGAACAAAAAAGAATTCAATATCATTAGGGAGAGAATTTAATGACGTGGCATCGAAGTAAAAAAAAAAAAAAAAAAAACTTATAATTTATTATTATTATTTTTTTTTTATTTTTTTATGGGGGAGTCCTCACTTTGTCTCGTAATTATATTTCCGCCCTTCAAATATTTATCGCCCACTCCTTTCGTGCATTCGGCATTTTGGAAATCGGAACGAACAACAGAGACAGTCAAGCCTGCTTTTCGAAGATCAACTCCCATCTCCATCTTCGTAATCGACTTCCGAAAAGGTTAGACGCCCTTCTTCCTTCCGAGATCTGCTTTTTTCCCTCTGTTTTCAATCGATCTCACACATTATCTGGTCCTCTGCAGCTTCTAA

mRNA sequence

ATGATCCGGAAGTGGGCCAGTCCAATCCACCCCGATGGACGGCTACCGGTGGCGCTCGAAAGCGTTGAATGTGATCCCACCGTCCAACCTTTTTCTTACGAGGCCTGGGGCCCAGTGTCTAGATGGGCGGCCGGTGGACCCCGCCTTGGCCCCACTTCCAACTCCTTAGTCGTACAGCGCAACTCCAACGCGTCGGGTCCACCAAATTCCTTTAGTGTACCTCCGATTTTACGGTTTTACCCCTTCAGAATTAACCGGGACCAAGGGTCAGCACCCGGTCGCCGGTGGAATTCAGACAGTCAAGCCTGCTTTTCGAAGATCAACTCCCATCTCCATCTTCGTAATCGACTTCCGAAAAGCTTCTAA

Coding sequence (CDS)

ATGATCCGGAAGTGGGCCAGTCCAATCCACCCCGATGGACGGCTACCGGTGGCGCTCGAAAGCGTTGAATGTGATCCCACCGTCCAACCTTTTTCTTACGAGGCCTGGGGCCCAGTGTCTAGATGGGCGGCCGGTGGACCCCGCCTTGGCCCCACTTCCAACTCCTTAGTCGTACAGCGCAACTCCAACGCGTCGGGTCCACCAAATTCCTTTAGTGTACCTCCGATTTTACGGTTTTACCCCTTCAGAATTAACCGGGACCAAGGGTCAGCACCCGGTCGCCGGTGGAATTCAGACAGTCAAGCCTGCTTTTCGAAGATCAACTCCCATCTCCATCTTCGTAATCGACTTCCGAAAAGCTTCTAA

Protein sequence

MIRKWASPIHPDGRLPVALESVECDPTVQPFSYEAWGPVSRWAAGGPRLGPTSNSLVVQRNSNASGPPNSFSVPPILRFYPFRINRDQGSAPGRRWNSDSQACFSKINSHLHLRNRLPKSF
Homology
[Close]
BLAST of Csor.00g084080 vs. NCBI nr
Match: KAG6575477.1 (hypothetical protein SDJN03_26116, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259 bits (662), Expect = 2.16e-87
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MIRKWASPIHPDGRLPVALESVECDPTVQPFSYEAWGPVSRWAAGGPRLGPTSNSLVVQR 60
           MIRKWASPIHPDGRLPVALESVECDPTVQPFSYEAWGPVSRWAAGGPRLGPTSNSLVVQR
Sbjct: 1   MIRKWASPIHPDGRLPVALESVECDPTVQPFSYEAWGPVSRWAAGGPRLGPTSNSLVVQR 60

Query: 61  NSNASGPPNSFSVPPILRFYPFRINRDQGSAPGRRWNSDSQACFSKINSHLHLRNRLPKS 120
           NSNASGPPNSFSVPPILRFYPFRINRDQGSAPGRRWNSDSQACFSKINSHLHLRNRLPKS
Sbjct: 61  NSNASGPPNSFSVPPILRFYPFRINRDQGSAPGRRWNSDSQACFSKINSHLHLRNRLPKS 120

[Close]
BLAST of Csor.00g084080 vs. ExPASy TrEMBL
Match: A0A0A0K9M8 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G451350 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.96e-04
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 97  NSDSQACFSKINSHLHLRNRLPKSF 121
           N DSQACFSKINSHLHL +RLP+SF
Sbjct: 14  NRDSQACFSKINSHLHLHHRLPRSF 38

The following BLAST results are available for this feature:
BLAST of Csor.00g084080 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g084080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575477.12.16e-87100.00hypothetical protein SDJN03_26116, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g084080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9M82.96e-0484.00Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G451350... [more]
BLAST of Csor.00g084080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g084080.m01Csor.00g084080.m01mRNA