Csor.00g082180 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g082180
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 488819 .. 490403 (-)
RNA-Seq ExpressionCsor.00g082180
SyntenyCsor.00g082180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTTCGTTTCAAGCTCTTTTCTTTACTACAGAATGACATCGAGCCAGCCGACTGGGACAACCATACAGAAGCAATCTCCAACCAACAATGCACTATGTATATGTTTCTTAAATGAAAGCTTTGAATGCAGGTTTATGGACTAATTGGAAAAGAGAACAAGGGCTGAGGTCATGTAATGTGGCCCAATTTTCAGAGACCCAGCCAGGCCCTATAAAATCCAACCCTCCTCCTCACGTGCCCTCTTCTCAGCATCGGATCTTGTGAAGTTGGTGAGATTTCTTTCCCTTTTTTTTTTTTCTTTCTTTCTTTCTTTTTTCAAGTCATGGGACATGCAATTTTACTATACCCATCTGGGACTGGGACTTGGAAAAGTTGAAGAAGTATTGTCTTTTCCTGGGTCCCCCAATTGTTAATTATTTAAAACGAGAGGGGGTCGGAACTCTGAAGTATTATTTTATTTGGATTCCTTTATTAATATCGATCTTCTATGGGGACGTTAAGTGATATTATTAAAACATTCTGTGTCTCGCCATCGCGTTATCCATTCATGAGTGCATATACATCTTTAACACTCAATAATTCGCTAAGCTGATTCCCTTCATTTTGCTGGAGAAGTGATTCCCTCACCCTACAGTGACGCTTGTCGGTCACATTCACAATGTCGGTAAAAACAGTGTTCTGTTTCAGTAATTATTCCTTACCAATTTACATACTAAAATCCTAGATTTATTGTAAGGGTTTTCAACAAATGGCAGCTAAAGCTAGAGGAACAAGTAGAAAAGGAAAATGCAAAGAGAGAGCCGTTTGATTCAAATTGGACGGTGATTAAAGGGTGAAGTTTATACCATTAATTGTCCTTCTCTACACACATCCCAAGGCGTCCCTCTATTTTAATACGACTTTTATTTATGGAACTCAAAAACGGGTTTCATTAGCGAAATCTTCACCGAGACAAATCCACAATTGGCTTTAAGGATTTCAAACGCCTCATTTGTCTGCAGGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTTTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGTTGATTCTTTGATTTTGCCTCAAGGTAATAATTATTTGATTCTAATCTCTCTATCGCATTTTCTCTATTGAATTGTAGGATTTATTATGTTTTCCTTCATTTCTGGCATTGAGCTTTATTTAGTCTTCAGATTGCTCGGTTGAGACTTGATATGCTTGACGTTTTGTTTTATTAGGTCTCCCTGGTTATTTTATTCTTGCTTCTTGGTCTTTCTGGTCTTAGATGGATAATGTTTAGAGATTTTACTTTATTGTTGGATACTCTTTTCTTTGTGGTTGTTAGGTAGATGCCCACGACGCTTTGTTGCCCCACAATTTGAAGTTTCGAGCACTGTTCCTATTGTTTCTTGTTTGATCGCCATTGATTAA

mRNA sequence

ATGTCATTTCGTTTCAAGCTCTTTTCTTTACTACAGAATGACATCGAGCCAGCCGACTGGGACAACCATACAGAAGCAATCTCCAACCAACAATGCACTATAGACCCAGCCAGGCCCTATAAAATCCAACCCTCCTCCTCACGTGCCCTCTTCTCAGCATCGGATCTTGTGAAGTTGGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTTTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGTTGATTCTTTGATTTTGCCTCAAGGTAGATGCCCACGACGCTTTGTTGCCCCACAATTTGAAGTTTCGAGCACTGTTCCTATTGTTTCTTGTTTGATCGCCATTGATTAA

Coding sequence (CDS)

ATGTCATTTCGTTTCAAGCTCTTTTCTTTACTACAGAATGACATCGAGCCAGCCGACTGGGACAACCATACAGAAGCAATCTCCAACCAACAATGCACTATAGACCCAGCCAGGCCCTATAAAATCCAACCCTCCTCCTCACGTGCCCTCTTCTCAGCATCGGATCTTGTGAAGTTGGCGCGCTCTCCCTCTCTCTCTCTGTCTCGCTCGCCTTCGTCTCTCCATCCTCATCTTTTTCTCTACTTTTCCGACGGTCCGCCGAGGCATTTTGGCGGCGCCGATCGCCGATTTGTCTCTCTGCCGTCGATCTCGTACTGTCAGTCGACGATTCTCCTCTATCGGCTGCTTCTGAACGAACTTTTCCGAGTTTTGATTTTCTTTGTATTGGTTGATTCTTTGATTTTGCCTCAAGGTAGATGCCCACGACGCTTTGTTGCCCCACAATTTGAAGTTTCGAGCACTGTTCCTATTGTTTCTTGTTTGATCGCCATTGATTAA

Protein sequence

MSFRFKLFSLLQNDIEPADWDNHTEAISNQQCTIDPARPYKIQPSSSRALFSASDLVKLARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNELFRVLIFFVLVDSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID
Homology
[Close]
BLAST of Csor.00g082180 vs. NCBI nr
Match: KAG6591275.1 (hypothetical protein SDJN03_13621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327 bits (838), Expect = 8.46e-113
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MSFRFKLFSLLQNDIEPADWDNHTEAISNQQCTIDPARPYKIQPSSSRALFSASDLVKLA 60
           MSFRFKLFSLLQNDIEPADWDNHTEAISNQQCTIDPARPYKIQPSSSRALFSASDLVKLA
Sbjct: 1   MSFRFKLFSLLQNDIEPADWDNHTEAISNQQCTIDPARPYKIQPSSSRALFSASDLVKLA 60

Query: 61  RSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNEL 120
           RSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNEL
Sbjct: 61  RSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNEL 120

Query: 121 FRVLIFFVLVDSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID 165
           FRVLIFFVLVDSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID
Sbjct: 121 FRVLIFFVLVDSLILPQGRCPRRFVAPQFEVSSTVPIVSCLIAID 165

[Close]
BLAST of Csor.00g082180 vs. NCBI nr
Match: KAG7024160.1 (hypothetical protein SDJN02_12973, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156 bits (394), Expect = 4.74e-45
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0 

Query: 60  ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE 119
           ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE
Sbjct: 85  ARSPSLSLSRSPSSLHPHLFLYFSDGPPRHFGGADRRFVSLPSISYCQSTILLYRLLLNE 144

Query: 120 LFRVLIFFVLVDSLILPQGRCPRRFVAPQFE 150
           LFRVLIFFVLVDSLILPQG  P  F+   + 
Sbjct: 145 LFRVLIFFVLVDSLILPQGL-PGYFILASWS 174

The following BLAST results are available for this feature:
BLAST of Csor.00g082180 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g082180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591275.18.46e-113100.00hypothetical protein SDJN03_13621, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024160.14.74e-4589.01hypothetical protein SDJN02_12973, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g082180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g082180 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g082180.m01Csor.00g082180.m01mRNA