Csor.00g081370 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g081370
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 131112 .. 132055 (+)
RNA-Seq ExpressionCsor.00g081370
SyntenyCsor.00g081370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAAGTCCTCAAGTTGGTGCCCTCAAGTTATAGAAGGTCACGGTTATCATATCTGGTTTATGAAATAATTCATATCTTGAATTGTTGATCGCCCATACAAGTATTGTATTTCATAATTTAAATATTTCCAGTTTTCAGAATGTTGCCTTTTATCTGATCCTTAGATTCTTAGACGTTTCTACCAATTTGCTGTGCTTGTCAAGAATCTCTAACCTCATTGTGGTAGGCAAACTTGCGTATTTTTGGGATCCTATCATTTGTTGAAATTGTTCTTTCCTTTCCGTTCTCTTTGTTTCCCATTTCTATGCTAGGAATAGTATTGTGAGTGGATTGTTTTTTGTTTTGTTTTGTTCTGTTCTGTTCTGTTCTTTTCTTTTTAGAAAACTCGAGTAGAAAGAATAATGGGTGAGCTCCGGGAACCATATTTCTTCCTCTACTTTATACCGAACTACCTAGAGAATGCCGAAATAAGAATGATTGATCGTTTCGTACTTAATTGAAATGATCGAGCGCAAATTTTGTCAACCACAGGCATTTGTGATTGCAGGTTTGTGAAATCTTGGGAAAGCCTATGCCAAACCCTGCTCGGACGGAAGCAATTAAGGAGGTGATGGGAGGTCTATGGTTGGGTTCATGATTCCTGCCCGGATGGCCTCCCTCCCAGAGGAGAGTAGTCAGAAAGTCCTTCCTTATCCTTCTGAATATTTTGGTTGTTTCCACTATGAGATAATGGTTTTCCTTGTAGGCTTCTTCTTATGCAGCCAAGCGATGGAAGATGATTTGAATCATTTGGGCTTCACATTGTTGTTCATGGAGGAAGCCTGCGTCTGGAACGACGTTGTTCTTCAAGTGGGTAAGCGTATGGATCCGTTGTTGTTCCAACTTGCTAAGTTAGCTGGATGGTCTTGCATGAAGTCCTACGATCTCAGTCACCGTTGA

mRNA sequence

ATGTTGAAAGTCCTCAAGTTGGTGCCCTCAAGTTATAGAAGGTTTGTGAAATCTTGGGAAAGCCTATGCCAAACCCTGCTCGGACGGAAGCAATTAAGGAGCCAAGCGATGGAAGATGATTTGAATCATTTGGGCTTCACATTGTTGTTCATGGAGGAAGCCTGCGTCTGGAACGACGTTGTTCTTCAAGTGGGTAAGCGTATGGATCCGTTGTTGTTCCAACTTGCTAAGTTAGCTGGATGGTCTTGCATGAAGTCCTACGATCTCAGTCACCGTTGA

Coding sequence (CDS)

ATGTTGAAAGTCCTCAAGTTGGTGCCCTCAAGTTATAGAAGGTTTGTGAAATCTTGGGAAAGCCTATGCCAAACCCTGCTCGGACGGAAGCAATTAAGGAGCCAAGCGATGGAAGATGATTTGAATCATTTGGGCTTCACATTGTTGTTCATGGAGGAAGCCTGCGTCTGGAACGACGTTGTTCTTCAAGTGGGTAAGCGTATGGATCCGTTGTTGTTCCAACTTGCTAAGTTAGCTGGATGGTCTTGCATGAAGTCCTACGATCTCAGTCACCGTTGA

Protein sequence

MLKVLKLVPSSYRRFVKSWESLCQTLLGRKQLRSQAMEDDLNHLGFTLLFMEEACVWNDVVLQVGKRMDPLLFQLAKLAGWSCMKSYDLSHR
Homology
[Close]
BLAST of Csor.00g081370 vs. NCBI nr
Match: KAG6591194.1 (hypothetical protein SDJN03_13540, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (486), Expect = 1.82e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MLKVLKLVPSSYRRFVKSWESLCQTLLGRKQLRSQAMEDDLNHLGFTLLFMEEACVWNDV 60
          MLKVLKLVPSSYRRFVKSWESLCQTLLGRKQLRSQAMEDDLNHLGFTLLFMEEACVWNDV
Sbjct: 1  MLKVLKLVPSSYRRFVKSWESLCQTLLGRKQLRSQAMEDDLNHLGFTLLFMEEACVWNDV 60

Query: 61 VLQVGKRMDPLLFQLAKLAGWSCMKSYDLSHR 92
          VLQVGKRMDPLLFQLAKLAGWSCMKSYDLSHR
Sbjct: 61 VLQVGKRMDPLLFQLAKLAGWSCMKSYDLSHR 92

[Close]
BLAST of Csor.00g081370 vs. NCBI nr
Match: KAG7024080.1 (DEAD-box ATP-dependent RNA helicase 42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (322), Expect = 4.48e-32
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 26   LLGRKQLRSQAMEDDLNHLGFTLLFMEEACVWNDVVLQVGKRMDPLLFQLAKLAGWSCMK 85
            ++G   L SQAMEDDLNHLGFTLLFMEEACVWNDVVLQVGKRMDPLLFQLAKLAGWSCMK
Sbjct: 1242 VMGGFFLCSQAMEDDLNHLGFTLLFMEEACVWNDVVLQVGKRMDPLLFQLAKLAGWSCMK 1301

Query: 86   SYDLSHR 92
            SYDLSHR
Sbjct: 1302 SYDLSHR 1308

The following BLAST results are available for this feature:
BLAST of Csor.00g081370 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g081370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591194.11.82e-61100.00hypothetical protein SDJN03_13540, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024080.14.48e-3291.04DEAD-box ATP-dependent RNA helicase 42, partial [Cucurbita argyrosperma subsp. a... [more]
BLAST of Csor.00g081370 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g081370 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g081370.m01Csor.00g081370.m01mRNA