Csor.00g079240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g079240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	dof zinc finger protein DOF5.1-like
Location	Csor_Chr07: 4929663 .. 4929974 (+)
RNA-Seq Expression	Csor.00g079240
Synteny	Csor.00g079240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTAAATTACAATGCGATTAGTACACAAAATGAAGGATGCAAGGGTTCAAGTTATCCCATTGGGATGGCCAACTTTTTAGGGTTGGATCAACATCAATGGCGGCCACAACAGCTTCAGCTTCACCAATTGCAACCAGCTCGGTTGCTCGGCAATAATGTCGTCGAGGCATCGTCGAGCTATAACGTGGTCGGGCAACAAAAGGTTAACAACAACAACAACGTGGGGAAGCCATTTTGGGGAGTTGTTGCAGGAAGTGATCGCCATTGTTGGACTGCTTTTAATCCTTCATCTTCTTCCCATTCTTAA

mRNA sequence

ATGAGATTAAATTACAATGCGATTAGTACACAAAATGAAGGATGCAAGGGTTCAAGTTATCCCATTGGGATGGCCAACTTTTTAGGGTTGGATCAACATCAATGGCGGCCACAACAGCTTCAGCTTCACCAATTGCAACCAGCTCGGTTGCTCGGCAATAATGTCGTCGAGGCATCGTCGAGCTATAACGTGGTCGGGCAACAAAAGGTTAACAACAACAACAACGTGGGGAAGCCATTTTGGGGAGTTGTTGCAGGAAGTGATCGCCATTGTTGGACTGCTTTTAATCCTTCATCTTCTTCCCATTCTTAA

Coding sequence (CDS)

ATGAGATTAAATTACAATGCGATTAGTACACAAAATGAAGGATGCAAGGGTTCAAGTTATCCCATTGGGATGGCCAACTTTTTAGGGTTGGATCAACATCAATGGCGGCCACAACAGCTTCAGCTTCACCAATTGCAACCAGCTCGGTTGCTCGGCAATAATGTCGTCGAGGCATCGTCGAGCTATAACGTGGTCGGGCAACAAAAGGTTAACAACAACAACAACGTGGGGAAGCCATTTTGGGGAGTTGTTGCAGGAAGTGATCGCCATTGTTGGACTGCTTTTAATCCTTCATCTTCTTCCCATTCTTAA

Protein sequence

MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASSSYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS

Homology

[Close]

BLAST of Csor.00g079240 vs. NCBI nr
Match: KAG6595314.1 (hypothetical protein SDJN03_11867, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (548), Expect = 1.41e-70
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60
           MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS
Sbjct: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60

Query: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103
           SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS
Sbjct: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103

[Close]

BLAST of Csor.00g079240 vs. NCBI nr
Match: KAG7027323.1 (Dof zinc finger protein DOF3.6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (536), Expect = 2.66e-67
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60
           MRLNYNAISTQNEG KGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS
Sbjct: 103 MRLNYNAISTQNEGGKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 162

Query: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103
           SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS
Sbjct: 163 SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 205

[Close]

BLAST of Csor.00g079240 vs. NCBI nr
Match: XP_022972784.1 (dof zinc finger protein DOF3.6-like [Cucurbita maxima])

HSP 1 Score: 207 bits (526), Expect = 1.47e-65
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60
           MRLNYNAISTQ EG KGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNV+EASS
Sbjct: 119 MRLNYNAISTQIEGGKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVIEASS 178

Query: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103
           SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS
Sbjct: 179 SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 221

[Close]

BLAST of Csor.00g079240 vs. NCBI nr
Match: XP_022963131.1 (dof zinc finger protein 4-like [Cucurbita moschata])

HSP 1 Score: 201 bits (511), Expect = 2.55e-63
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60
           MRLNYNAISTQNEG KGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLL NNVVEASS
Sbjct: 117 MRLNYNAISTQNEGGKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLRNNVVEASS 176

Query: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103
           SYNVVGQQKVNNN NVGKPFWGVVAGSDRHCWTAFNPSSSSHS
Sbjct: 177 SYNVVGQQKVNNN-NVGKPFWGVVAGSDRHCWTAFNPSSSSHS 218

[Close]

BLAST of Csor.00g079240 vs. NCBI nr
Match: XP_023517155.1 (dof zinc finger protein DOF2.4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190 bits (482), Expect = 4.21e-59
Identity = 94/103 (91.26%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60
           MRLNYNAISTQNEG KGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS
Sbjct: 106 MRLNYNAISTQNEGVKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 165

Query: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103
           SYN+VGQQKV      GKP WGVVAGSDRHCWTAFNPSSSSHS
Sbjct: 166 SYNMVGQQKVKE----GKPLWGVVAGSDRHCWTAFNPSSSSHS 204

[Close]

BLAST of Csor.00g079240 vs. ExPASy TrEMBL
Match: A0A6J1ICK3 (dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111471291 PE=4 SV=1)

HSP 1 Score: 207 bits (526), Expect = 7.13e-66
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60
           MRLNYNAISTQ EG KGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNV+EASS
Sbjct: 119 MRLNYNAISTQIEGGKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVIEASS 178

Query: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103
           SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS
Sbjct: 179 SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 221

[Close]

BLAST of Csor.00g079240 vs. ExPASy TrEMBL
Match: A0A6J1HF83 (dof zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111463431 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 1.24e-63
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVVEASS 60
           MRLNYNAISTQNEG KGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLL NNVVEASS
Sbjct: 117 MRLNYNAISTQNEGGKGSSYPIGMANFLGLDQHQWRPQQLQLHQLQPARLLRNNVVEASS 176

Query: 61  SYNVVGQQKVNNNNNVGKPFWGVVAGSDRHCWTAFNPSSSSHS 103
           SYNVVGQQKVNNN NVGKPFWGVVAGSDRHCWTAFNPSSSSHS
Sbjct: 177 SYNVVGQQKVNNN-NVGKPFWGVVAGSDRHCWTAFNPSSSSHS 218

[Close]

BLAST of Csor.00g079240 vs. ExPASy TrEMBL
Match: A0A5A7SP42 (Dof zinc finger protein DOF5.1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00150 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 6.56e-26
Identity = 71/134 (52.99%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MRLNYN-AISTQNEGCKGSSY-------PIGMANFLGLDQHQWRPQQLQLHQL-QP---- 60
           MRLNYN AIST NEG   S++       PIG++NFLG DQ QWRPQ LQLHQ  QP    
Sbjct: 152 MRLNYNNAISTPNEGAVDSTHHHHHHHHPIGISNFLGFDQIQWRPQ-LQLHQTTQPSSLV 211

Query: 61  ---ARLLGNNVVEASSSYNVVGQ----------------QKVNNNNNVGKPFWGVVAGSD 101
              ARLLGN  + +S SY++VG+                Q+V   NNVGKPFWGVV G+D
Sbjct: 212 ANSARLLGNGGINSSLSYSIVGEIQKKMDATTTKMEEDGQQVAEVNNVGKPFWGVVGGND 271

[Close]

BLAST of Csor.00g079240 vs. ExPASy TrEMBL
Match: A0A1S3BI28 (dof zinc finger protein DOF5.1-like OS=Cucumis melo OX=3656 GN=LOC103490127 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 6.56e-26
Identity = 71/134 (52.99%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MRLNYN-AISTQNEGCKGSSY-------PIGMANFLGLDQHQWRPQQLQLHQL-QP---- 60
           MRLNYN AIST NEG   S++       PIG++NFLG DQ QWRPQ LQLHQ  QP    
Sbjct: 152 MRLNYNNAISTPNEGAVDSTHHHHHHHHPIGISNFLGFDQIQWRPQ-LQLHQTTQPSSLV 211

Query: 61  ---ARLLGNNVVEASSSYNVVGQ----------------QKVNNNNNVGKPFWGVVAGSD 101
              ARLLGN  + +S SY++VG+                Q+V   NNVGKPFWGVV G+D
Sbjct: 212 ANSARLLGNGGINSSLSYSIVGEIQKKMDATTTKMEEDGQQVAEVNNVGKPFWGVVGGND 271

[Close]

BLAST of Csor.00g079240 vs. ExPASy TrEMBL
Match: A0A6J1ILP5 (dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111478150 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.60e-23
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MRLNYNAISTQNEGCKGSSYP-IGMANFLGLDQHQWRPQQLQLHQLQPARLLGNNVV--E 60
           MRLNY     QNEG   S++P IG+ +FLG DQ QWRPQ LQLH+ QPARLLGN     +
Sbjct: 146 MRLNY----IQNEGVMNSTHPPIGITSFLGFDQIQWRPQ-LQLHRAQPARLLGNGGGGDD 205

Query: 61  ASSSYNVVGQQKVNNNN---NVGKPFWGVVAGSDRHCWTAFNPSSSS 101
           ASSSY++VG+ +  +     NVGKPFW      DRH W AFNPSSSS
Sbjct: 206 ASSSYSIVGKMEAEDGEHHVNVGKPFW------DRHYWNAFNPSSSS 241

The following BLAST results are available for this feature:

BLAST of Csor.00g079240 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g079240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595314.1	1.41e-70	100.00	hypothetical protein SDJN03_11867, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027323.1	2.66e-67	99.03	Dof zinc finger protein DOF3.6, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022972784.1	1.47e-65	97.09	dof zinc finger protein DOF3.6-like [Cucurbita maxima]	[more]
XP_022963131.1	2.55e-63	97.09	dof zinc finger protein 4-like [Cucurbita moschata]	[more]
XP_023517155.1	4.21e-59	91.26	dof zinc finger protein DOF2.4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g079240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICK3	7.13e-66	97.09	dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111471291 ...	[more]
A0A6J1HF83	1.24e-63	97.09	dof zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111463431 PE=...	[more]
A0A5A7SP42	6.56e-26	52.99	Dof zinc finger protein DOF5.1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BI28	6.56e-26	52.99	dof zinc finger protein DOF5.1-like OS=Cucumis melo OX=3656 GN=LOC103490127 PE=4...	[more]
A0A6J1ILP5	2.60e-23	57.01	dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111478150 ...	[more]

BLAST of Csor.00g079240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g079240.m01	Csor.00g079240.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding