Csor.00g078960 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g078960
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr07: 4745116 .. 4745598 (-)
RNA-Seq ExpressionCsor.00g078960
SyntenyCsor.00g078960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGCAGTGGCTCTAACTCCATTGGCCTGCTCATGGCCAATGCAAACAGCTACGACTACCCCGGTCGGAGTCCCTCTCCATTTTGGACTGGTTTTACAGGCCAACACCAGTTTTCTGATGGAGACCCAATTGAAGATGATCCCGAGGGTGATCGGACTAACCTCAGTTGTTTCGAGAATTCGCAGAATGAACTCGACTCCTCGGATCTCATCTTCAATGGCCAAGACCCTTATGACAATCAAAGTGGCTGCACAATGGAGAATAGAGAACTCATTCTCTTCCACAATGAGGATCAAACTGAGGATTATACTGGTGATCCTAGAAACCTATACTATGAATTTGATTGGGCTTGTTTTCGATATTGGTTTGGACTTGGAGAAGATGAACAAGACTGGAATGGGCAAGAATTGAGACTAGAACAAGACTGCAGTTCTGAGGCTGTGGCCCTCCTAGAATCCATCCTGGGGTATTGGTCATGA

mRNA sequence

ATGAATTGCAGTGGCTCTAACTCCATTGGCCTGCTCATGGCCAATGCAAACAGCTACGACTACCCCGGTCGGAGTCCCTCTCCATTTTGGACTGGTTTTACAGGCCAACACCAGTTTTCTGATGGAGACCCAATTGAAGATGATCCCGAGGGTGATCGGACTAACCTCAGTTGTTTCGAGAATTCGCAGAATGAACTCGACTCCTCGGATCTCATCTTCAATGGCCAAGACCCTTATGACAATCAAAGTGGCTGCACAATGGAGAATAGAGAACTCATTCTCTTCCACAATGAGGATCAAACTGAGGATTATACTGGTGATCCTAGAAACCTATACTATGAATTTGATTGGGCTTGTTTTCGATATTGGTTTGGACTTGGAGAAGATGAACAAGACTGGAATGGGCAAGAATTGAGACTAGAACAAGACTGCAGTTCTGAGGCTGTGGCCCTCCTAGAATCCATCCTGGGGTATTGGTCATGA

Coding sequence (CDS)

ATGAATTGCAGTGGCTCTAACTCCATTGGCCTGCTCATGGCCAATGCAAACAGCTACGACTACCCCGGTCGGAGTCCCTCTCCATTTTGGACTGGTTTTACAGGCCAACACCAGTTTTCTGATGGAGACCCAATTGAAGATGATCCCGAGGGTGATCGGACTAACCTCAGTTGTTTCGAGAATTCGCAGAATGAACTCGACTCCTCGGATCTCATCTTCAATGGCCAAGACCCTTATGACAATCAAAGTGGCTGCACAATGGAGAATAGAGAACTCATTCTCTTCCACAATGAGGATCAAACTGAGGATTATACTGGTGATCCTAGAAACCTATACTATGAATTTGATTGGGCTTGTTTTCGATATTGGTTTGGACTTGGAGAAGATGAACAAGACTGGAATGGGCAAGAATTGAGACTAGAACAAGACTGCAGTTCTGAGGCTGTGGCCCTCCTAGAATCCATCCTGGGGTATTGGTCATGA

Protein sequence

MNCSGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFENSQNELDSSDLIFNGQDPYDNQSGCTMENRELILFHNEDQTEDYTGDPRNLYYEFDWACFRYWFGLGEDEQDWNGQELRLEQDCSSEAVALLESILGYWS
Homology
BLAST of Csor.00g078960 vs. NCBI nr
Match: KAG6595286.1 (hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345 bits (884), Expect = 5.57e-120
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   MNCSGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFE 60
           MNCSGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFE
Sbjct: 1   MNCSGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFE 60

Query: 61  NSQNELDSSDLIFNGQDPYDNQSGCTMENRELILFHNEDQTEDYTGDPRNLYYEFDWACF 120
           NSQNELDSSDLIFNGQDPYDNQSGCTMENRELILFHNEDQTEDYTGDPRNLYYEFDWACF
Sbjct: 61  NSQNELDSSDLIFNGQDPYDNQSGCTMENRELILFHNEDQTEDYTGDPRNLYYEFDWACF 120

Query: 121 RYWFGLGEDEQDWNGQELRLEQDCSSEAVALLESILGYWS 160
           RYWFGLGEDEQDWNGQELRLEQDCSSEAVALLESILGYWS
Sbjct: 121 RYWFGLGEDEQDWNGQELRLEQDCSSEAVALLESILGYWS 160

BLAST of Csor.00g078960 vs. NCBI nr
Match: KAA0047323.1 (hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 1.31e-51
Identity = 93/158 (58.86%), Postives = 115/158 (72.78%), Query Frame = 0

Query: 4   SGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFENSQ 63
           +GS+SIGLLM NAN Y+Y   S + F  GF  QHQ SDGDPI D+PE ++T  SC+    
Sbjct: 7   NGSDSIGLLMLNANDYNY---SIAEF--GFMSQHQ-SDGDPIGDNPESEQTYHSCYGWPS 66

Query: 64  NELDSSDLIFNGQDPYDNQSGCTMENR-ELILFHNEDQTEDYTGDPRNLYYEFDWACFRY 123
           NE++ +DL FN + PY NQ+GC  E+  ELIL+ NE+Q EDY GD RNLYYEF W C R+
Sbjct: 67  NEVEPTDLFFNCEYPYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 126

Query: 124 WFGLGEDEQ--DWNGQELRLEQDCSSEAVALLESILGY 158
           WFGLGE+EQ  + NGQEL  E DC S+A+ALLE+ILGY
Sbjct: 127 WFGLGEEEQGQERNGQELTPENDCRSDALALLEAILGY 158

BLAST of Csor.00g078960 vs. NCBI nr
Match: KGN54204.1 (hypothetical protein Csa_017990 [Cucumis sativus])

HSP 1 Score: 169 bits (427), Expect = 2.02e-50
Identity = 91/158 (57.59%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 4   SGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFENSQ 63
           +GS+SIGLLM NAN YD P         GF  QHQ SDGDPI D+PE ++   SC+  S 
Sbjct: 7   NGSDSIGLLMLNANGYDIPEF-------GFMSQHQ-SDGDPIGDNPESEQAYHSCYGWSS 66

Query: 64  NELDSSDLIFNGQDPYDNQSGCTMENR-ELILFHNEDQTEDYTGDPRNLYYEFDWACFRY 123
           NE++ +DL FN +  Y NQ+GC  E+  ELIL+ NE+Q EDY GD RNLYYEF W C R+
Sbjct: 67  NEVNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 126

Query: 124 WFGLGEDEQ--DWNGQELRLEQDCSSEAVALLESILGY 158
           WFG+GEDEQ  + NGQEL  E DC S+A+ALLE+ILGY
Sbjct: 127 WFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

BLAST of Csor.00g078960 vs. ExPASy TrEMBL
Match: A0A5A7TUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001440 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 6.35e-52
Identity = 93/158 (58.86%), Postives = 115/158 (72.78%), Query Frame = 0

Query: 4   SGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFENSQ 63
           +GS+SIGLLM NAN Y+Y   S + F  GF  QHQ SDGDPI D+PE ++T  SC+    
Sbjct: 7   NGSDSIGLLMLNANDYNY---SIAEF--GFMSQHQ-SDGDPIGDNPESEQTYHSCYGWPS 66

Query: 64  NELDSSDLIFNGQDPYDNQSGCTMENR-ELILFHNEDQTEDYTGDPRNLYYEFDWACFRY 123
           NE++ +DL FN + PY NQ+GC  E+  ELIL+ NE+Q EDY GD RNLYYEF W C R+
Sbjct: 67  NEVEPTDLFFNCEYPYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 126

Query: 124 WFGLGEDEQ--DWNGQELRLEQDCSSEAVALLESILGY 158
           WFGLGE+EQ  + NGQEL  E DC S+A+ALLE+ILGY
Sbjct: 127 WFGLGEEEQGQERNGQELTPENDCRSDALALLEAILGY 158

BLAST of Csor.00g078960 vs. ExPASy TrEMBL
Match: A0A0A0KZF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 9.79e-51
Identity = 91/158 (57.59%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 4   SGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFENSQ 63
           +GS+SIGLLM NAN YD P         GF  QHQ SDGDPI D+PE ++   SC+  S 
Sbjct: 7   NGSDSIGLLMLNANGYDIPEF-------GFMSQHQ-SDGDPIGDNPESEQAYHSCYGWSS 66

Query: 64  NELDSSDLIFNGQDPYDNQSGCTMENR-ELILFHNEDQTEDYTGDPRNLYYEFDWACFRY 123
           NE++ +DL FN +  Y NQ+GC  E+  ELIL+ NE+Q EDY GD RNLYYEF W C R+
Sbjct: 67  NEVNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 126

Query: 124 WFGLGEDEQ--DWNGQELRLEQDCSSEAVALLESILGY 158
           WFG+GEDEQ  + NGQEL  E DC S+A+ALLE+ILGY
Sbjct: 127 WFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6595286.15.57e-120100.00hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0047323.11.31e-5158.86hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa][more]
KGN54204.12.02e-5057.59hypothetical protein Csa_017990 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7TUT56.35e-5258.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KZF29.79e-5157.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g078960.m01Csor.00g078960.m01mRNA