Csor.00g078730 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g078730
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 5538478 .. 5538732 (-)
RNA-Seq ExpressionCsor.00g078730
SyntenyCsor.00g078730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGATTTCCTACGTCCGTTGGATCTGATTTTTCAGGAAGCTTTTGGACCGAGCGAAAAGGACTTTCAGCCTTTGCGCAAGCAAGCAAAGTCGAATCGAAGCTTTGCCAGAAGCAAGACGAGGAAGCTGAGCTGTCGTATAAATGCTAGCTTCCCCCGACCTACTTACACTTTGATTCAAAAGAAAGGCTCAGGGGTTTTTGGCAACAAGCAAACGACTTTCTATCATAGTTGCAAGGGTTACAAACCTTAA

mRNA sequence

ATGCAGGATTTCCTACGTCCGTTGGATCTGATTTTTCAGGAAGCTTTTGGACCGAGCGAAAAGGACTTTCAGCCTTTGCGCAAGCAAGCAAAGTCGAATCGAAGCTTTGCCAGAAGCAAGACGAGGAAGCTGAGCTGTCGTATAAATGCTAGCTTCCCCCGACCTACTTACACTTTGATTCAAAAGAAAGGCTCAGGGGTTTTTGGCAACAAGCAAACGACTTTCTATCATAGTTGCAAGGGTTACAAACCTTAA

Coding sequence (CDS)

ATGCAGGATTTCCTACGTCCGTTGGATCTGATTTTTCAGGAAGCTTTTGGACCGAGCGAAAAGGACTTTCAGCCTTTGCGCAAGCAAGCAAAGTCGAATCGAAGCTTTGCCAGAAGCAAGACGAGGAAGCTGAGCTGTCGTATAAATGCTAGCTTCCCCCGACCTACTTACACTTTGATTCAAAAGAAAGGCTCAGGGGTTTTTGGCAACAAGCAAACGACTTTCTATCATAGTTGCAAGGGTTACAAACCTTAA

Protein sequence

MQDFLRPLDLIFQEAFGPSEKDFQPLRKQAKSNRSFARSKTRKLSCRINASFPRPTYTLIQKKGSGVFGNKQTTFYHSCKGYKP
Homology
[Close]
BLAST of Csor.00g078730 vs. NCBI nr
Match: KAG6573509.1 (hypothetical protein SDJN03_27396, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 1.07e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MQDFLRPLDLIFQEAFGPSEKDFQPLRKQAKSNRSFARSKTRKLSCRINASFPRPTYTLI 60
          MQDFLRPLDLIFQEAFGPSEKDFQPLRKQAKSNRSFARSKTRKLSCRINASFPRPTYTLI
Sbjct: 1  MQDFLRPLDLIFQEAFGPSEKDFQPLRKQAKSNRSFARSKTRKLSCRINASFPRPTYTLI 60

Query: 61 QKKGSGVFGNKQTTFYHSCKGYKP 84
          QKKGSGVFGNKQTTFYHSCKGYKP
Sbjct: 61 QKKGSGVFGNKQTTFYHSCKGYKP 84

[Close]
BLAST of Csor.00g078730 vs. NCBI nr
Match: KAG6585907.1 (NADH-ubiquinone oxidoreductase chain 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (401), Expect = 2.44e-46
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1  MQDFLRPLDLIFQEAFGPSEKDFQPLRKQAKSNRSFARSKTRKLSCRINASFPRPTYTLI 60
          M+DFLRPLDLIF+EAFGPSEKDFQPLRKQAKSNRSFARSKTRK SCRINASFPRPTYTLI
Sbjct: 1  MRDFLRPLDLIFREAFGPSEKDFQPLRKQAKSNRSFARSKTRKQSCRINASFPRPTYTLI 60

Query: 61 QKKGSGVFGNKQTTFYHSCK 80
          QKKGSGVFGNKQTTFYHSCK
Sbjct: 61 QKKGSGVFGNKQTTFYHSCK 80

[Close]
BLAST of Csor.00g078730 vs. NCBI nr
Match: KEH16848.1 (hypothetical protein MTR_0082s0070 [Medicago truncatula])

HSP 1 Score: 61.6 bits (148), Expect = 6.19e-10
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 1  MQDFLRPLDLIFQEAFGPSEKDFQPLR----KQAKSNRSFARSKTRKLSCRINASFPRPT 56
          M+DF         EAFGPSEKD   LR    +++K +RSFARSKTRK SCRI+ SFPRPT
Sbjct: 1  MRDFSWIRSFALTEAFGPSEKDLISLRASKRERSKQSRSFARSKTRKQSCRISGSFPRPT 60

[Close]
BLAST of Csor.00g078730 vs. ExPASy TrEMBL
Match: A0A072TJ04 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0082s0070 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.00e-10
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 1  MQDFLRPLDLIFQEAFGPSEKDFQPLR----KQAKSNRSFARSKTRKLSCRINASFPRPT 56
          M+DF         EAFGPSEKD   LR    +++K +RSFARSKTRK SCRI+ SFPRPT
Sbjct: 1  MRDFSWIRSFALTEAFGPSEKDLISLRASKRERSKQSRSFARSKTRKQSCRISGSFPRPT 60

The following BLAST results are available for this feature:
BLAST of Csor.00g078730 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g078730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573509.11.07e-54100.00hypothetical protein SDJN03_27396, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585907.12.44e-4696.25NADH-ubiquinone oxidoreductase chain 4, partial [Cucurbita argyrosperma subsp. s... [more]
KEH16848.16.19e-1058.33hypothetical protein MTR_0082s0070 [Medicago truncatula][more]
BLAST of Csor.00g078730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A072TJ043.00e-1058.33Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0082s0070 PE=4 SV=... [more]
BLAST of Csor.00g078730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g078730.m01Csor.00g078730.m01mRNA