Csor.00g077610 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g077610
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 6574604 .. 6576087 (+)
RNA-Seq ExpressionCsor.00g077610
SyntenyCsor.00g077610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGCGTGGGAAGGTTAGCAAGGGAAGGAGAAGACGACGACGACGGATGTTTAGTGCTATGGTCTGATGGAGAACTCGGATGAGAACGTTGGAGGAAGAGAACTCATTGTCTCGTTACGCTTCGATGACGCTACAGATCTTGAGTCAGAAAGATGAGGGGAAAATGGCCGGCGAGGTCACTTTCTTATCCGAAAAGGAATGCCACTAGTTAGACTATCAGCTTGCTTCTCCTAATGCCAACACCAAGAAGAAGGTCGTTTACGCGCTTAACTTGCATTGGCAACGTCGGCCGGCCTATCTATATCCAACGTGAGAGAGACCAATTTCCTTAGTTAGAAGGAAGGCGTTCTCGAGACATAGCTTTCTAAGTAGAATCCGAAATCCCAGCGATTACCAGGTGACCCATTAACTAATCTTTCTGACAACAGCTAAGCTTCCTAGGTGCCGTGTGAAGCTGCTACCCGGAAAGACCAATCAACGGTTGACTCTGAAATGACACGTTGAAAGTCTTGTAAAGGAAGAAAAAGCGCTGCTATTCTCTAAAAAGAACCTTCCTTCTATACGTCAAGACTCTTCCTAGTTCGTGCTACTTTAGAATACATCTACACCGAAGGAAATATTGAATTTCATTGTCCTTCCTGGCCATGAAAGAATACCAAAATATGCCTGATAGATAAGAAGTCAAACAATCAAGGTAGGGATTGTTGGCTTGGAACTCGAGCAGTCTCCCCTCATACACCGGGAAGGCTTCTAGCTTCTCTGCCTGAAGGAGCTTTTGGCAGTGAGTCGAAAGTCTTAGTGAGAAGCCCTCTCCTATCTAGGACTATTTCCACTCTTCTCTGAGTGCCAAAAAAACAGTGCTAAGGTAGCGCTCACAGCGAGAGCTCAACTTACTATTATTCCTACCCTAATGTGTCAAGAAGAGAATAGGTAGTACAGGTCAGCAAGCAAGCATAGCTATATCTAAGGTATCTGGATCATCAGGTATATATATCCTACCCTACCCCACCAACCCTTCTTGTTCTTGGTTCTTTTGTGCTATCTTTCTATCCTGTTTCCAGCGTTAATGTAGAAGTCTCAGGTGTAGAAAGAAGGATTATCAGATTTGATTCAGTGATTTAGCTTGAATCAATCTTTCCTCATTTTCAGGCCCTCTCTCTGCCGAGCCTCTTGGAGTGCTTGCTGTGCTAGGGGTTGTATTCCCCAGAAGCCTCCAGGTATTCCCCGTGGGTGGGAAAAGACTTTCTAAATCTTCTGATGATGCTCGGGATTACTAGATTGAGTTCTTGCTTATACACTCTCGAGAGACCTCTCTCAGGATATGCCGACAAGGCTGGAGGAGCTACTGACTATCCTGATTTTGATTCGTCAACGGATGCAAGAGAGGAAGCTACTGGGGGCAGAGGCAGGAGTACCCGTCTCAGGCGGGAAAAGAGAAGGAACTCAGTATGACCTGACGCTCGTTGGAAGGAATTCGTAG

mRNA sequence

ATGACCCGCGTGGGAAGGTTAGCAAGGGAAGGAGAAGACGACGACGACGGATGTTTAGTGCTATGGGATTGTTGGCTTGGAACTCGAGCAGTCTCCCCTCATACACCGGGAAGGCTTCTAGCTTCTCTGCCTGAAGGAGCTTTTGGCAGTGAGTCGAAAGTCTTAAAGAGAATAGGTAGTACAGGTCAGCAAGCAAGCATAGCTATATCTAAGGTATCTGGATCATCAGGCCCTCTCTCTGCCGAGCCTCTTGGAGTGCTTGCTGTGCTAGGGGTTGTATTCCCCAGAAGCCTCCAGGATATGCCGACAAGGCTGGAGGAGCTACTGACTATCCTGATTTTGATTCGTCAACGGATGCAAGAGAGGAAGCTACTGGGGGCAGAGGCAGGAGTACCCGTCTCAGGCGGGAAAAGAGAAGGAACTCAGTATGACCTGACGCTCGTTGGAAGGAATTCGTAG

Coding sequence (CDS)

ATGACCCGCGTGGGAAGGTTAGCAAGGGAAGGAGAAGACGACGACGACGGATGTTTAGTGCTATGGGATTGTTGGCTTGGAACTCGAGCAGTCTCCCCTCATACACCGGGAAGGCTTCTAGCTTCTCTGCCTGAAGGAGCTTTTGGCAGTGAGTCGAAAGTCTTAAAGAGAATAGGTAGTACAGGTCAGCAAGCAAGCATAGCTATATCTAAGGTATCTGGATCATCAGGCCCTCTCTCTGCCGAGCCTCTTGGAGTGCTTGCTGTGCTAGGGGTTGTATTCCCCAGAAGCCTCCAGGATATGCCGACAAGGCTGGAGGAGCTACTGACTATCCTGATTTTGATTCGTCAACGGATGCAAGAGAGGAAGCTACTGGGGGCAGAGGCAGGAGTACCCGTCTCAGGCGGGAAAAGAGAAGGAACTCAGTATGACCTGACGCTCGTTGGAAGGAATTCGTAG

Protein sequence

MTRVGRLAREGEDDDDGCLVLWDCWLGTRAVSPHTPGRLLASLPEGAFGSESKVLKRIGSTGQQASIAISKVSGSSGPLSAEPLGVLAVLGVVFPRSLQDMPTRLEELLTILILIRQRMQERKLLGAEAGVPVSGGKREGTQYDLTLVGRNS
Homology
[Close]
BLAST of Csor.00g077610 vs. NCBI nr
Match: KAG6599010.1 (hypothetical protein SDJN03_08788, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297 bits (760), Expect = 2.49e-101
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MTRVGRLAREGEDDDDGCLVLWDCWLGTRAVSPHTPGRLLASLPEGAFGSESKVLKRIGS 60
           MTRVGRLAREGEDDDDGCLVLWDCWLGTRAVSPHTPGRLLASLPEGAFGSESKVLKRIGS
Sbjct: 1   MTRVGRLAREGEDDDDGCLVLWDCWLGTRAVSPHTPGRLLASLPEGAFGSESKVLKRIGS 60

Query: 61  TGQQASIAISKVSGSSGPLSAEPLGVLAVLGVVFPRSLQDMPTRLEELLTILILIRQRMQ 120
           TGQQASIAISKVSGSSGPLSAEPLGVLAVLGVVFPRSLQDMPTRLEELLTILILIRQRMQ
Sbjct: 61  TGQQASIAISKVSGSSGPLSAEPLGVLAVLGVVFPRSLQDMPTRLEELLTILILIRQRMQ 120

Query: 121 ERKLLGAEAGVPVSGGKREGTQYDLTLVGRNS 152
           ERKLLGAEAGVPVSGGKREGTQYDLTLVGRNS
Sbjct: 121 ERKLLGAEAGVPVSGGKREGTQYDLTLVGRNS 152

[Close]
BLAST of Csor.00g077610 vs. NCBI nr
Match: KAG6585950.1 (hypothetical protein SDJN03_18683, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268 bits (684), Expect = 4.08e-88
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MTRVGRLAREGEDDDDGCLVLWDCWLGTRAVSPHTPGRLLASLPEGAFGSESKVLKRIGS 60
           MT VGRLAREGEDDDDGCLVLWDCWLGTRAVSPHTP RLLASLPEGAFGSESKVL+RIGS
Sbjct: 1   MTPVGRLAREGEDDDDGCLVLWDCWLGTRAVSPHTPRRLLASLPEGAFGSESKVLERIGS 60

Query: 61  TGQQASIAISKVSGSSGPLSAEPLGVLAVLGVVFPRSLQDMPTRLEELLTILILIRQRMQ 120
           TGQQASIAISKVSGS GPLSAEPLGVLAVLGVVFPRSLQDMPTRLEELLTILILIRQRMQ
Sbjct: 61  TGQQASIAISKVSGSEGPLSAEPLGVLAVLGVVFPRSLQDMPTRLEELLTILILIRQRMQ 120

Query: 121 ERKLLGAEAGVPVSGGKREGTQ 142
           ERKLLGAEAGVPVSGGKREGTQ
Sbjct: 121 ERKLLGAEAGVPVSGGKREGTQ 142

[Close]
BLAST of Csor.00g077610 vs. NCBI nr
Match: KAG6573504.1 (hypothetical protein SDJN03_27391, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 2.71e-35
Identity = 79/108 (73.15%), Postives = 81/108 (75.00%), Query Frame = 0 

Query: 41  ASLPEGAFGSESKVLKRIGSTGQQASIAISKVSGSSGPLSAEPLGVLAVLGVVFPRSLQD 100
           +S  EGAFGSESKVLKRIGSTGQQASIAISKVSGS GPLSAEPLGVLAVLGVVFPRSLQ 
Sbjct: 37  SSSSEGAFGSESKVLKRIGSTGQQASIAISKVSGSEGPLSAEPLGVLAVLGVVFPRSLQV 96

Query: 101 MPTRLEELL------TILILIRQRMQERKLLGAEAGVPVSGGKREGTQ 142
            P    +                  QERKLLGAEAGVPVSGGKREGTQ
Sbjct: 97  FPVGYADEAGGATDYPDFDSSTDARQERKLLGAEAGVPVSGGKREGTQ 144

The following BLAST results are available for this feature:
BLAST of Csor.00g077610 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g077610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599010.12.49e-101100.00hypothetical protein SDJN03_08788, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585950.14.08e-8897.18hypothetical protein SDJN03_18683, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573504.12.71e-3573.15hypothetical protein SDJN03_27391, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g077610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g077610 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 150..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g077610.m01Csor.00g077610.m01mRNA