Csor.00g077590 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g077590
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 5680598 .. 5681176 (-)
RNA-Seq Expression	Csor.00g077590
Synteny	Csor.00g077590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAATCTTCCATTATCTTTGGCGACTCTGATTCTTCAGAAAGGTGGGCAGCCCCGACGCACTCCTTTTCTTCAATCCATTTTCAATGTTCTATCAGTTCTGGATGTTCCCACTCTGTTTCCAATCCATTTCAACTCCTCCTCCTCCCCGTCCTCCCCCCCACTTCTCCAATTCTTCGATTGGTTTCCTCGTCCGGCTCGTACCCCACCCATCTTCAAATTCATATCATATCGGACACAAAATCTGTTCCCCTCATCTCTCTGTTTCAGTTCAACTCTGTTTTTTTTTGTTTTTCTCTGCCCATTTGTTCTTCTCCTGGACTTCGCCTAGAGCTAAGCTCTGCCGTTTCTCCGATGACTTCAGATTCTGGGAATTCGCCGGAAACTCATAAGCCTCACTGTAATCCTTTGAGATCCAAAACTTTCCCGCGAAAATTCCAGAATCGGCGAGAAATCCCATGTTCTGGGAATCTCGCTAATTCGAAACAAGAATTCAAAAAACCTCCAAAGGAAGCTTGGAATTTCAGGATTCTTCACGAAGTGGCTAGTACTCTTCTCCGCAAAAACTCAATCTGA

mRNA sequence

ATGGCTAAATCTTCCATTATCTTTGGCGACTCTGATTCTTCAGAAAGGTGGGCAGCCCCGACGCACTCCTTTTCTTCAATCCATTTTCAATGTTCTATCAGTTCTGGATGTTCCCACTCTGTTTCCAATCCATTTCAACTCCTCCTCCTCCCCGTCCTCCCCCCCACTTCTCCAATTCTTCGATTGGTTTCCTCGTCCGGCTCGTACCCCACCCATCTTCAAATTCATATCATATCGGACACAAAATCTGTTCCCCTCATCTCTCTGTTTCAGTTCAACTCTGTTTTTTTTTGTTTTTCTCTGCCCATTTGTTCTTCTCCTGGACTTCGCCTAGAGCTAAGCTCTGCCGTTTCTCCGATGACTTCAGATTCTGGGAATTCGCCGGAAACTCATAAGCCTCACTGTAATCCTTTGAGATCCAAAACTTTCCCGCGAAAATTCCAGAATCGGCGAGAAATCCCATGTTCTGGGAATCTCGCTAATTCGAAACAAGAATTCAAAAAACCTCCAAAGGAAGCTTGGAATTTCAGGATTCTTCACGAAGTGGCTAGTACTCTTCTCCGCAAAAACTCAATCTGA

Coding sequence (CDS)

ATGGCTAAATCTTCCATTATCTTTGGCGACTCTGATTCTTCAGAAAGGTGGGCAGCCCCGACGCACTCCTTTTCTTCAATCCATTTTCAATGTTCTATCAGTTCTGGATGTTCCCACTCTGTTTCCAATCCATTTCAACTCCTCCTCCTCCCCGTCCTCCCCCCCACTTCTCCAATTCTTCGATTGGTTTCCTCGTCCGGCTCGTACCCCACCCATCTTCAAATTCATATCATATCGGACACAAAATCTGTTCCCCTCATCTCTCTGTTTCAGTTCAACTCTGTTTTTTTTTGTTTTTCTCTGCCCATTTGTTCTTCTCCTGGACTTCGCCTAGAGCTAAGCTCTGCCGTTTCTCCGATGACTTCAGATTCTGGGAATTCGCCGGAAACTCATAAGCCTCACTGTAATCCTTTGAGATCCAAAACTTTCCCGCGAAAATTCCAGAATCGGCGAGAAATCCCATGTTCTGGGAATCTCGCTAATTCGAAACAAGAATTCAAAAAACCTCCAAAGGAAGCTTGGAATTTCAGGATTCTTCACGAAGTGGCTAGTACTCTTCTCCGCAAAAACTCAATCTGA

Protein sequence

MAKSSIIFGDSDSSERWAAPTHSFSSIHFQCSISSGCSHSVSNPFQLLLLPVLPPTSPILRLVSSSGSYPTHLQIHIISDTKSVPLISLFQFNSVFFCFSLPICSSPGLRLELSSAVSPMTSDSGNSPETHKPHCNPLRSKTFPRKFQNRREIPCSGNLANSKQEFKKPPKEAWNFRILHEVASTLLRKNSI

Homology

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BLAST of Csor.00g077590 vs. NCBI nr
Match: KAG6588348.1 (hypothetical protein SDJN03_16913, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384 bits (985), Expect = 2.53e-134
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MAKSSIIFGDSDSSERWAAPTHSFSSIHFQCSISSGCSHSVSNPFQLLLLPVLPPTSPIL 60
           MAKSSIIFGDSDSSERWAAPTHSFSSIHFQCSISSGCSHSVSNPFQLLLLPVLPPTSPIL
Sbjct: 1   MAKSSIIFGDSDSSERWAAPTHSFSSIHFQCSISSGCSHSVSNPFQLLLLPVLPPTSPIL 60

Query: 61  RLVSSSGSYPTHLQIHIISDTKSVPLISLFQFNSVFFCFSLPICSSPGLRLELSSAVSPM 120
           RLVSSSGSYPTHLQIHIISDTKSVPLISLFQFNSVFFCFSLPICSSPGLRLELSSAVSPM
Sbjct: 61  RLVSSSGSYPTHLQIHIISDTKSVPLISLFQFNSVFFCFSLPICSSPGLRLELSSAVSPM 120

Query: 121 TSDSGNSPETHKPHCNPLRSKTFPRKFQNRREIPCSGNLANSKQEFKKPPKEAWNFRILH 180
           TSDSGNSPETHKPHCNPLRSKTFPRKFQNRREIPCSGNLANSKQEFKKPPKEAWNFRILH
Sbjct: 121 TSDSGNSPETHKPHCNPLRSKTFPRKFQNRREIPCSGNLANSKQEFKKPPKEAWNFRILH 180

Query: 181 EVASTLLRKNSI 192
           EVASTLLRKNSI
Sbjct: 181 EVASTLLRKNSI 192

The following BLAST results are available for this feature:

BLAST of Csor.00g077590 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g077590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588348.1	2.53e-134	100.00	hypothetical protein SDJN03_16913, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g077590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g077590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g077590.m01	Csor.00g077590.m01	mRNA