Csor.00g076990 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g076990
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 10716730 .. 10717527 (+)
RNA-Seq ExpressionCsor.00g076990
SyntenyCsor.00g076990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTTTTCCATTTGAAGTGTGGGATCCTTATGACATTCCAAGCAAGGTGATCCTTGTAGCCATTCTTAAGCTTTAAAATTCAGATTACCTTTTTTCTTGTTTGGGTTGCAGAACTTTAAAGATTGTGATATTTTCCATTCTTCTCTTTACTACTACTTGCTAAATAATTTTTGTTTCATAGATCTTTGGAAGAGAACGAAAGAAAACAAGGGGATCGAGGTAAGGCAGCTGCTAATCTCCTGCCGTTCGTTCGTTTGTTCGTTCGTTCACTCACACAAACTGCAGGTGTTCAACCTAGCTGTTTATTCATTTACATTAGCTGTTTATTCATTTACATTAGCTGTTTATTCATTTACATTAGCTGTTTATTCATATAAAAGACGATCACGATATGAATGTTCAATGCTGCACCTTCGTCGTAGAATAGGTAGTTTCCATTTTCATTTTCATTCATGTGAATAGATTTACAGAAGTGCAATAGGAAGAAGAACGCTCTGAACCAATTGGTTCAACCTTGCGATTCTGGAAAAGGATCCAGAAGTTAGTTTGATGGTGATGTATCTGCATCTGTTTTTTCACTTGGTGTCAAATTAATCGTTTCACTGTAGGTTGATTTGCTCAACCAAACAGAGTTGAAAAGAACTATACTGACATATCCTGAAGTCGAAATGAGTTATTTGCACAAATTTCCAGCAATTGATCTTCACCGGCTGGGACGCCCCGGTGTTGGTTGTTGTGCTGATGCAAGGGTGTACAAGGATTTAAGCTGCTTGCTGTCATGGAGAGCTAGCTGA

mRNA sequence

ATGATAGTTTTCCATTTGAAGTGTGGGATCCTTATGACATTCCAAGCAAGATCTTTGGAAGAGAACGAAAGAAAACAAGGGGATCGAGGTAAGGCAGCTGCTAATCTCCTGCCGTTCGTTCGTTTGTTCGTTCGTTCACTCACACAAACTGCAGCAATTGATCTTCACCGGCTGGGACGCCCCGGTGTTGGTTGTTGTGCTGATGCAAGGGTGTACAAGGATTTAAGCTGCTTGCTGTCATGGAGAGCTAGCTGA

Coding sequence (CDS)

ATGATAGTTTTCCATTTGAAGTGTGGGATCCTTATGACATTCCAAGCAAGATCTTTGGAAGAGAACGAAAGAAAACAAGGGGATCGAGGTAAGGCAGCTGCTAATCTCCTGCCGTTCGTTCGTTTGTTCGTTCGTTCACTCACACAAACTGCAGCAATTGATCTTCACCGGCTGGGACGCCCCGGTGTTGGTTGTTGTGCTGATGCAAGGGTGTACAAGGATTTAAGCTGCTTGCTGTCATGGAGAGCTAGCTGA

Protein sequence

MIVFHLKCGILMTFQARSLEENERKQGDRGKAAANLLPFVRLFVRSLTQTAAIDLHRLGRPGVGCCADARVYKDLSCLLSWRAS
Homology
[Close]
BLAST of Csor.00g076990 vs. NCBI nr
Match: KAG6607975.1 (hypothetical protein SDJN03_01317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 1.07e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MIVFHLKCGILMTFQARSLEENERKQGDRGKAAANLLPFVRLFVRSLTQTAAIDLHRLGR 60
          MIVFHLKCGILMTFQARSLEENERKQGDRGKAAANLLPFVRLFVRSLTQTAAIDLHRLGR
Sbjct: 1  MIVFHLKCGILMTFQARSLEENERKQGDRGKAAANLLPFVRLFVRSLTQTAAIDLHRLGR 60

Query: 61 PGVGCCADARVYKDLSCLLSWRAS 84
          PGVGCCADARVYKDLSCLLSWRAS
Sbjct: 61 PGVGCCADARVYKDLSCLLSWRAS 84

[Close]
BLAST of Csor.00g076990 vs. NCBI nr
Match: KAG7037489.1 (hypothetical protein SDJN02_01116, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 1.20e-15
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 36  LLPFVRLFVRSLTQTAAIDLHRLGRPGVGCCADARVYKDLSCLLSWRAS 84
           +L +  + +  L +  AIDLHRLGRPGVGCCADARVYKDLSCLLSWRAS
Sbjct: 65  ILTYPEVEMSYLHKFPAIDLHRLGRPGVGCCADARVYKDLSCLLSWRAS 113

The following BLAST results are available for this feature:
BLAST of Csor.00g076990 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g076990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607975.11.07e-54100.00hypothetical protein SDJN03_01317, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037489.11.20e-1571.43hypothetical protein SDJN02_01116, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g076990 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g076990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g076990.m01Csor.00g076990.m01mRNA