Csor.00g076540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g076540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Precursor of CEP12
Location	Csor_Chr01: 11020862 .. 11021122 (+)
RNA-Seq Expression	Csor.00g076540
Synteny	Csor.00g076540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTAGAAGTTTTCACCTTCTCGCTCTCGTCGTTTTCCTCCTTTATTTCCTCTCGGTAACATCACGACCCCGACATGATATTTATTCACCAGCTATTGTAGTTGGCTTTGGCAATCGCCATGCAATAACGCCTCCTGCTTCGATGTCGACATTCTCGATAAATCGGTATAAATATGTCGAGATGGACGCTTTTCGACCCACGTCGCCTGGGCATAGCCCTGGTGTAGGTCATAAGGACCCACCCGGTGCTTCATAG

mRNA sequence

ATGCCTCTTAGAAGTTTTCACCTTCTCGCTCTCGTCGTTTTCCTCCTTTATTTCCTCTCGGTAACATCACGACCCCGACATGATATTTATTCACCAGCTATTGTAGTTGGCTTTGGCAATCGCCATGCAATAACGCCTCCTGCTTCGATGTCGACATTCTCGATAAATCGGTATAAATATGTCGAGATGGACGCTTTTCGACCCACGTCGCCTGGGCATAGCCCTGGTGTAGGTCATAAGGACCCACCCGGTGCTTCATAG

Coding sequence (CDS)

ATGCCTCTTAGAAGTTTTCACCTTCTCGCTCTCGTCGTTTTCCTCCTTTATTTCCTCTCGGTAACATCACGACCCCGACATGATATTTATTCACCAGCTATTGTAGTTGGCTTTGGCAATCGCCATGCAATAACGCCTCCTGCTTCGATGTCGACATTCTCGATAAATCGGTATAAATATGTCGAGATGGACGCTTTTCGACCCACGTCGCCTGGGCATAGCCCTGGTGTAGGTCATAAGGACCCACCCGGTGCTTCATAG

Protein sequence

MPLRSFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMSTFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPGAS

Homology

[Close]

BLAST of Csor.00g076540 vs. ExPASy Swiss-Prot
Match: P0DN99 (Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-07
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPA----SMSTFSINRYKY 64
          SF +L L+V  L+F + T+  +     P  V G  +    +PP+        F IN YK 
Sbjct: 12 SFFMLFLLVLHLHFETTTAARK-----PVRVFGPPSSIEWSPPSPPKDDFEWFEINIYKN 71

Query: 65 VEMDAFRPTSPGHSPGVGHKDPPGA 86
          +E  AFRPT  G S G+GHKDPPGA
Sbjct: 72 IEQTAFRPTGQGPSQGIGHKDPPGA 91

[Close]

BLAST of Csor.00g076540 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-05
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 55 INRYKYVEMDAFRPTSPGHSPGVGHKDPPGA 86
          INR+K +E DAFRPT  G S G+GHK+PPGA
Sbjct: 55 INRFKNIEQDAFRPTHQGPSQGIGHKNPPGA 85

[Close]

BLAST of Csor.00g076540 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (444), Expect = 3.03e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPLRSFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMSTFSINRYKY 60
          MPLRSFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMSTFSINRYKY
Sbjct: 1  MPLRSFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMSTFSINRYKY 60

Query: 61 VEMDAFRPTSPGHSPGVGHKDPPGAS 86
          VEMDAFRPTSPGHSPGVGHKDPPGAS
Sbjct: 61 VEMDAFRPTSPGHSPGVGHKDPPGAS 86

[Close]

BLAST of Csor.00g076540 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.04e-23
Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 4  RSFH---LLALVVFLLYFLSVTSRPRHDI----YSPAIVVGFGNRHAITPPASMST--FS 63
          RS H   LL L+  LL+ LSVTSRP H I     + A+ V   + HAI PPA +ST  FS
Sbjct: 5  RSLHFINLLPLITLLLHSLSVTSRPLHGIDPLPSAAAMAVVSAHCHAILPPAPVSTLAFS 64

Query: 64 INRYKYVEMDAFRPTSPGHSPGVGHKDPPG 84
          INRYKYVE DAFRPT+PGHSPGVGH DPPG
Sbjct: 65 INRYKYVETDAFRPTTPGHSPGVGHTDPPG 94

[Close]

BLAST of Csor.00g076540 vs. NCBI nr
Match: CAB4309383.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 72.4 bits (176), Expect = 2.48e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMSTFSINRYKYVEM- 64
          SF ++AL++   + L   SRP    + PA+ +G  N+     P S+  F+INRYK  E  
Sbjct: 9  SFFMVALLLGQNFDLVAASRPLLHTHPPAVHIGSLNKPI---PPSIGRFTINRYKMTESS 68

Query: 65 ---DAFRPTSPGHSPGVGHKDPPGA 85
             DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SGADAFRPTSPGHSPGVGHQDPPGA 90

[Close]

BLAST of Csor.00g076540 vs. NCBI nr
Match: ONI05583.1 (hypothetical protein PRUPE_5G014000 [Prunus persica])

HSP 1 Score: 70.5 bits (171), Expect = 1.46e-13
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRH-DIYSPAIVVGFGNRHAITPPASMSTFSINRYKYVEM 64
          SF ++AL++     L   SRP H   + PAI +G  N+     P S+  F+INRYK  E 
Sbjct: 9  SFFMVALLLGQNSDLVAASRPLHLHTHPPAIHIGSLNKPI---PPSIGRFTINRYKMTES 68

Query: 65 ----DAFRPTSPGHSPGVGHKDPPGA 85
              DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SSGADAFRPTSPGHSPGVGHQDPPGA 91

[Close]

BLAST of Csor.00g076540 vs. NCBI nr
Match: PQQ11015.1 (hypothetical protein Pyn_23546 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 70.5 bits (171), Expect = 1.46e-13
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRH-DIYSPAIVVGFGNRHAITPPASMSTFSINRYKYVEM 64
          SF ++AL++   + L   SRP H   + PAI +G  N+     P S+  F+INRYK  E 
Sbjct: 9  SFFMVALLLGQNFDLVAASRPLHLHTHPPAIHIGSLNKPI---PPSIGRFTINRYKMTES 68

Query: 65 ----DAFRPTSPGHSPGVGHKDPPGA 85
              DAFRPTSPGHSPGVGH++PPGA
Sbjct: 69 SSGADAFRPTSPGHSPGVGHQNPPGA 91

[Close]

BLAST of Csor.00g076540 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.39e-20
Identity = 54/93 (58.06%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 4  RSFHL--------LALVVFLLYFLSVTS-RPRHDIYSPAIVVGFGNRHAITPPASMS--- 63
          RS HL        L L++ LL+ L VTS RP H I+         N HAITPPA +S   
Sbjct: 4  RSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPH-------NPHAITPPAPVSLET 63

Query: 64 TFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPG 84
          +FSINRYKYVE DAFRPTSPGHSPGVGH +PPG
Sbjct: 64 SFSINRYKYVETDAFRPTSPGHSPGVGHNEPPG 89

[Close]

BLAST of Csor.00g076540 vs. ExPASy TrEMBL
Match: A0A6J5XA40 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30481 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.20e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMSTFSINRYKYVEM- 64
          SF ++AL++   + L   SRP    + PA+ +G  N+     P S+  F+INRYK  E  
Sbjct: 9  SFFMVALLLGQNFDLVAASRPLLHTHPPAVHIGSLNKPI---PPSIGRFTINRYKMTESS 68

Query: 65 ---DAFRPTSPGHSPGVGHKDPPGA 85
             DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SGADAFRPTSPGHSPGVGHQDPPGA 90

[Close]

BLAST of Csor.00g076540 vs. ExPASy TrEMBL
Match: A0A6N2KEL8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS36007 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.24e-14
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 19 LSVTSRPRHDIYSPAIVVGFGNRHAITPPASM---STFSINRYKYVEMDAFRPTSPGHSP 78
          L+  SRP  DI+SPAI      R+   PPA +   S + INRYK +E DAFRPT+PGHSP
Sbjct: 26 LTAASRPL-DIHSPAIPGPGSLRNPRPPPADIVHDSWYRINRYKNMESDAFRPTTPGHSP 85

Query: 79 GVGHKDPPGA 85
          GVGH++PP A
Sbjct: 86 GVGHEEPPSA 94

[Close]

BLAST of Csor.00g076540 vs. ExPASy TrEMBL
Match: M5WX34 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014000 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.06e-14
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRH-DIYSPAIVVGFGNRHAITPPASMSTFSINRYKYVEM 64
          SF ++AL++     L   SRP H   + PAI +G  N+     P S+  F+INRYK  E 
Sbjct: 9  SFFMVALLLGQNSDLVAASRPLHLHTHPPAIHIGSLNKPI---PPSIGRFTINRYKMTES 68

Query: 65 ----DAFRPTSPGHSPGVGHKDPPGA 85
              DAFRPTSPGHSPGVGH+DPPGA
Sbjct: 69 SSGADAFRPTSPGHSPGVGHQDPPGA 91

[Close]

BLAST of Csor.00g076540 vs. ExPASy TrEMBL
Match: A0A314YRH1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23546 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.06e-14
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRH-DIYSPAIVVGFGNRHAITPPASMSTFSINRYKYVEM 64
          SF ++AL++   + L   SRP H   + PAI +G  N+     P S+  F+INRYK  E 
Sbjct: 9  SFFMVALLLGQNFDLVAASRPLHLHTHPPAIHIGSLNKPI---PPSIGRFTINRYKMTES 68

Query: 65 ----DAFRPTSPGHSPGVGHKDPPGA 85
              DAFRPTSPGHSPGVGH++PPGA
Sbjct: 69 SSGADAFRPTSPGHSPGVGHQNPPGA 91

[Close]

BLAST of Csor.00g076540 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-07
Identity = 33/83 (39.76%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 5  SFHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPA----SMSTFSINRYKY 64
          SF +L L+V  L+F + T+  +     P  V G  +    +PP+        F IN YK 
Sbjct: 12 SFFMLFLLVLHLHFETTTAARK-----PVRVFGPPSSIEWSPPSPPKDDFEWFEINIYKN 71

Query: 65 VEMDAFRPTSPGHSPGVGHKDPP 84
          +E  AFRPT  G S G+GHKDPP
Sbjct: 72 IEQTAFRPTGQGPSQGIGHKDPP 89

[Close]

BLAST of Csor.00g076540 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 55 INRYKYVEMDAFRPTSPGHSPGVGHKDPPGA 86
          INR+K +E DAFRPT  G S G+GHK+PPGA
Sbjct: 55 INRFKNIEQDAFRPTHQGPSQGIGHKNPPGA 85

The following BLAST results are available for this feature:

BLAST of Csor.00g076540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN99	6.1e-07	41.18	Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1	[more]
Q3EBM6	1.9e-05	67.74	Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1	[more]

BLAST of Csor.00g076540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608019.1	3.03e-55	100.00	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6591857.1	1.04e-23	62.22	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
CAB4309383.1	2.48e-14	49.41	unnamed protein product [Prunus armeniaca]	[more]
ONI05583.1	1.46e-13	51.16	hypothetical protein PRUPE_5G014000 [Prunus persica]	[more]
PQQ11015.1	1.46e-13	50.00	hypothetical protein Pyn_23546 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Csor.00g076540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0	1.39e-20	58.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1	[more]
A0A6J5XA40	1.20e-14	49.41	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30481 PE=...	[more]
A0A6N2KEL8	5.24e-14	55.71	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS36007 PE=3 SV=1	[more]
M5WX34	7.06e-14	51.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014000 PE=3 SV=1	[more]
A0A314YRH1	7.06e-14	50.00	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_235...	[more]

BLAST of Csor.00g076540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31670.1	4.8e-07	39.76	Copper amine oxidase family protein	[more]
AT2G35612.1	1.4e-06	67.74	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 4..85
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 4..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g076540.m01	Csor.00g076540.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development