Csor.00g075660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g075660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	KH domain-containing protein
Location	Csor_Chr01: 11565508 .. 11566035 (+)
RNA-Seq Expression	Csor.00g075660
Synteny	Csor.00g075660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGGAGCTTTGTCAAGCCGAATGGGAAAGGAAAGTGGCACAAGCCATTAGGTGGTTCTCGTTCACAAAACCAATCCTTCAAACTCTCTCCTGGTTATGCTGTCTTTCGTGTCCTCTTTCATGTTTCAAGAATTGGCAGTCTAATAGGTGGAGATGGGGATGTTTTATCTCAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGAAACTGTACATGGAAGTAATGAGAAAATAGTAGTAATTGCAGGCCCTAATCAAGAAACTGAAGTGAACCCTGAGCAGAATAATAAGGAAGACAAGAAAAATTCTGAAGTCGAGGAGAACGGTGACGATATTGCTGAGTGTAAAAAGAAAGAAGATAAAGATTCTCCTCCTATGGAAGATGGTAAACAGAAGGAAGTTCCACATTTGCAATTGCGGAAGGCCCTCTTTCTTGTATCTGAGAAGTTCTTCGACGAAGAACCGGTGGCAGAAAACAGATGCTGA

mRNA sequence

ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGGAGCTTTGTCAAGCCGAATGGGAAAGGAAAGTGGCACAAGCCATTAGGTGGTTCTCGTTCACAAAACCAATCCTTCAAACTCTCTCCTGGTTATGCTGTCTTTCGTGTCCTCTTTCATGTTTCAAGAATTGGCAGTCTAATAGGTGGAGATGGGGATGTTTTATCTCAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGAAACTGTACATGGAAGTAATGAGAAAATAGTAGTAATTGCAGGCCCTAATCAAGAAACTGAAGTGAACCCTGAGCAGAATAATAAGGAAGACAAGAAAAATTCTGAAGTCGAGGAGAACGGTGACGATATTGCTGAGTGTAAAAAGAAAGAAGATAAAGATTCTCCTCCTATGGAAGATGGTAAACAGAAGGAAGTTCCACATTTGCAATTGCGGAAGGCCCTCTTTCTTGTATCTGAGAAGTTCTTCGACGAAGAACCGGTGGCAGAAAACAGATGCTGA

Coding sequence (CDS)

ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGGAGCTTTGTCAAGCCGAATGGGAAAGGAAAGTGGCACAAGCCATTAGGTGGTTCTCGTTCACAAAACCAATCCTTCAAACTCTCTCCTGGTTATGCTGTCTTTCGTGTCCTCTTTCATGTTTCAAGAATTGGCAGTCTAATAGGTGGAGATGGGGATGTTTTATCTCAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGAAACTGTACATGGAAGTAATGAGAAAATAGTAGTAATTGCAGGCCCTAATCAAGAAACTGAAGTGAACCCTGAGCAGAATAATAAGGAAGACAAGAAAAATTCTGAAGTCGAGGAGAACGGTGACGATATTGCTGAGTGTAAAAAGAAAGAAGATAAAGATTCTCCTCCTATGGAAGATGGTAAACAGAAGGAAGTTCCACATTTGCAATTGCGGAAGGCCCTCTTTCTTGTATCTGAGAAGTTCTTCGACGAAGAACCGGTGGCAGAAAACAGATGCTGA

Protein sequence

MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVEENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAENRC

Homology

[Close]

BLAST of Csor.00g075660 vs. ExPASy Swiss-Prot
Match: F4KDN0 (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.0e-05
Identity = 31/82 (37.80%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 44  GYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSNEKIV-VIAGPNQET 103
           G+A FR+L  +S +G++IG  G+V+ Q+++ TG +IRVEE   GS ++++ +IA  + ++
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 104 EV----NPEQNNKEDKKNSEVE 121
            V    N   N + +KK  EVE
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVE 126

[Close]

BLAST of Csor.00g075660 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 43  PGYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQ-E 102
           PG  VFR+L    ++GS+IG  GDV+ +I EET   I++ +   G+ E+ V+++G  + E
Sbjct: 184 PGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPE 243

Query: 103 TEVNPEQN 110
           + + P  +
Sbjct: 244 SSLPPSMD 251

[Close]

BLAST of Csor.00g075660 vs. ExPASy Swiss-Prot
Match: Q8W4B1 (RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN=RCF3 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.5e-04
Identity = 22/67 (32.84%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 30  GGSRSQNQSFKLSPGYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSN 89
           GG+   ++S   +     +R+L H ++ G +IG  G ++  IR+ TG  I V E V G  
Sbjct: 52  GGNGRPSKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDA 111

Query: 90  EKIVVIA 97
           E+I+ I+
Sbjct: 112 ERIIEIS 118

[Close]

BLAST of Csor.00g075660 vs. NCBI nr
Match: KAG6608107.1 (KH domain-containing protein HEN4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340 bits (872), Expect = 1.18e-117
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL
Sbjct: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE
Sbjct: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAENRC 175
           ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAENRC
Sbjct: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAENRC 175

[Close]

BLAST of Csor.00g075660 vs. NCBI nr
Match: KAG7031745.1 (KH domain-containing protein HEN4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325 bits (832), Expect = 6.50e-108
Identity = 167/169 (98.82%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MS+PLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL
Sbjct: 1   MSSPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE
Sbjct: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEP 169
           ENGDDIAECKKKEDKDSPP+EDGKQKEVPHLQLRKALFLVSEKFFDEEP
Sbjct: 121 ENGDDIAECKKKEDKDSPPLEDGKQKEVPHLQLRKALFLVSEKFFDEEP 169

[Close]

BLAST of Csor.00g075660 vs. NCBI nr
Match: XP_038896749.1 (KH domain-containing protein HEN4-like [Benincasa hispida])

HSP 1 Score: 247 bits (631), Expect = 7.78e-75
Identity = 135/173 (78.03%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDR+FVK NGKGKW K   GSRSQN+SFKLSPGYAVFRVLF VSRIGSL
Sbjct: 1   MSAPLTPSKRSRDRTFVKSNGKGKWQKS-SGSRSQNRSFKLSPGYAVFRVLFPVSRIGSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           +G DGD LS+IREETGVEIRVE+TV G +E++VVI    Q+TEVNPEQ +KED KNSEVE
Sbjct: 61  VGRDGDGLSKIREETGVEIRVEDTVPGCDERVVVIGDSKQDTEVNPEQKSKEDNKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  DIA+ K KEDKDSPP+ED KQKEV HLQLRKALFLVSEK FDEEP A+ 
Sbjct: 121 ENDGDIAKLKNKEDKDSPPVEDAKQKEVSHLQLRKALFLVSEKIFDEEPEADG 172

[Close]

BLAST of Csor.00g075660 vs. NCBI nr
Match: XP_004136236.1 (KH domain-containing protein HEN4 [Cucumis sativus] >XP_011652608.1 KH domain-containing protein HEN4 [Cucumis sativus] >XP_031737869.1 KH domain-containing protein HEN4 [Cucumis sativus] >KAE8651408.1 hypothetical protein Csa_002321 [Cucumis sativus])

HSP 1 Score: 243 bits (621), Expect = 2.29e-73
Identity = 132/173 (76.30%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDRS VK NGKGKW K  G    +NQSFKLSPGYAVFRVLF VSRI SL
Sbjct: 1   MSAPLTPSKRSRDRSSVKSNGKGKWQKSSGSRSRRNQSFKLSPGYAVFRVLFPVSRIDSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           +G DGD LS+IREETGVEIRVE+T+ G +E+I VI G NQETEVNPE+ +KED KNSEVE
Sbjct: 61  VGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNPEKKSKEDNKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  DIA+ KKKEDKDSPP+ED KQKEV H QLRKALFLVSEK FDEEP A+ 
Sbjct: 121 ENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFDEEPEADG 173

[Close]

BLAST of Csor.00g075660 vs. NCBI nr
Match: XP_022159704.1 (KH domain-containing protein HEN4-like [Momordica charantia])

HSP 1 Score: 241 bits (615), Expect = 1.74e-72
Identity = 134/174 (77.01%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDR+FVKPNGKGKW K   GSRS+NQS KLSPGYAVFRVLF  SRIGSL
Sbjct: 1   MSAPLTPSKRSRDRNFVKPNGKGKWQKS-SGSRSKNQSLKLSPGYAVFRVLFPASRIGSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           IG DG+VLSQIREETGVE+RVE+ + G +E+IVV+ G NQETEVNPEQN+KED KNSEVE
Sbjct: 61  IGRDGNVLSQIREETGVEVRVEDPIPGCDERIVVVGGSNQETEVNPEQNSKEDNKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGK-QKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  DIAE KKKEDKDS P+ED K +KEV +LQL+KALFLVSEK FDEEP  + 
Sbjct: 121 ENEGDIAEQKKKEDKDSLPVEDAKFRKEVTNLQLQKALFLVSEKIFDEEPEVDG 173

[Close]

BLAST of Csor.00g075660 vs. ExPASy TrEMBL
Match: A0A0A0LJT9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894490 PE=4 SV=1)

HSP 1 Score: 243 bits (621), Expect = 2.77e-73
Identity = 132/173 (76.30%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDRS VK NGKGKW K  G    +NQSFKLSPGYAVFRVLF VSRI SL
Sbjct: 53  MSAPLTPSKRSRDRSSVKSNGKGKWQKSSGSRSRRNQSFKLSPGYAVFRVLFPVSRIDSL 112

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           +G DGD LS+IREETGVEIRVE+T+ G +E+I VI G NQETEVNPE+ +KED KNSEVE
Sbjct: 113 VGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNPEKKSKEDNKNSEVE 172

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  DIA+ KKKEDKDSPP+ED KQKEV H QLRKALFLVSEK FDEEP A+ 
Sbjct: 173 ENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFDEEPEADG 225

[Close]

BLAST of Csor.00g075660 vs. ExPASy TrEMBL
Match: A0A6J1E343 (KH domain-containing protein HEN4-like OS=Momordica charantia OX=3673 GN=LOC111026043 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 8.44e-73
Identity = 134/174 (77.01%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDR+FVKPNGKGKW K   GSRS+NQS KLSPGYAVFRVLF  SRIGSL
Sbjct: 1   MSAPLTPSKRSRDRNFVKPNGKGKWQKS-SGSRSKNQSLKLSPGYAVFRVLFPASRIGSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           IG DG+VLSQIREETGVE+RVE+ + G +E+IVV+ G NQETEVNPEQN+KED KNSEVE
Sbjct: 61  IGRDGNVLSQIREETGVEVRVEDPIPGCDERIVVVGGSNQETEVNPEQNSKEDNKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGK-QKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  DIAE KKKEDKDS P+ED K +KEV +LQL+KALFLVSEK FDEEP  + 
Sbjct: 121 ENEGDIAEQKKKEDKDSLPVEDAKFRKEVTNLQLQKALFLVSEKIFDEEPEVDG 173

[Close]

BLAST of Csor.00g075660 vs. ExPASy TrEMBL
Match: A0A5A7T8U8 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005240 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 2.93e-72
Identity = 130/173 (75.14%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDRS VK NGKGKW K       +NQ FKLSPGYAVFRVLF VSRI SL
Sbjct: 1   MSAPLTPSKRSRDRSSVKSNGKGKWQKSSSSRSRRNQPFKLSPGYAVFRVLFPVSRIDSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           +G DGD LS+IREETGVEIRVE+T+ G +E+I VI G NQETEVNPE+ +KED KNSEVE
Sbjct: 61  VGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNPEKKSKEDNKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  DIA+ KKKEDKDSPP+ED KQKEV H QLRKALFLVSEK FDEEP A+ 
Sbjct: 121 ENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFDEEPEADG 173

[Close]

BLAST of Csor.00g075660 vs. ExPASy TrEMBL
Match: A0A1S3CRU9 (KH domain-containing protein At4g18375-like OS=Cucumis melo OX=3656 GN=LOC103503624 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 4.57e-72
Identity = 130/173 (75.14%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDRS VK NGKGKW K       +NQ FKLSPGYAVFRVLF VSRI SL
Sbjct: 1   MSAPLTPSKRSRDRSSVKSNGKGKWQKSSSSRSRRNQPFKLSPGYAVFRVLFPVSRIDSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           +G DGD LS+IREETGVEIRVE+T+ G +E+I VI G NQETEVNPE+ +KED KNSEVE
Sbjct: 61  VGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNPEKKSKEDNKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  DIA+ KKKEDKDSPP+ED KQKEV H QLRKALFLVSEK FDEEP A+ 
Sbjct: 121 ENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFDEEPEADG 173

[Close]

BLAST of Csor.00g075660 vs. ExPASy TrEMBL
Match: A0A6J1F912 (KH domain-containing protein HEN4-like OS=Cucurbita moschata OX=3662 GN=LOC111443416 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 9.14e-72
Identity = 133/173 (76.88%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MSAPLTPSKRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSL 60
           MSAPLTPSKRSRDR+ VK NGKGKW K   GSRS  QSFKLSPGYAVFRVLF VSRI SL
Sbjct: 1   MSAPLTPSKRSRDRNIVKSNGKGKWQK-TSGSRSHKQSFKLSPGYAVFRVLFPVSRIDSL 60

Query: 61  IGGDGDVLSQIREETGVEIRVEETVHGSNEKIVVIAGPNQETEVNPEQNNKEDKKNSEVE 120
           +GGDGDVLS+I EETGVEIRVE+T+ G +E+IVVI G NQETEVNPE+ NKED KNSEVE
Sbjct: 61  VGGDGDVLSKISEETGVEIRVEDTIPGCDERIVVIGGSNQETEVNPEEKNKEDNKNSEVE 120

Query: 121 ENGDDIAECKKKEDKDSPPMEDGKQKEVPHLQLRKALFLVSEKFFDEEPVAEN 173
           EN  D AE  KKEDK S P E+ KQKEVP+LQLRKALFLVSEK FDEEP A+ 
Sbjct: 121 ENEGDNAEWTKKEDKVSLPGEESKQKEVPYLQLRKALFLVSEKIFDEEPEADG 172

[Close]

BLAST of Csor.00g075660 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 9   KRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSLIGGDGDVL 68
           KRSR +S    NG G   +  G  R    S  +     VFR L  V +IGS+IG  GD++
Sbjct: 17  KRSRPQSDYDDNG-GSKRRYRGDDR---DSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIV 76

Query: 69  SQIREETGVEIRVEETVHGSNEKIVVIAGPNQET 103
            Q+R +T  +IR+ E + G +E+++ I  P+ ET
Sbjct: 77  KQLRNDTRSKIRIGEAIPGCDERVITIYSPSDET 106

[Close]

BLAST of Csor.00g075660 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 9   KRSRDRSFVKPNGKGKWHKPLGGSRSQNQSFKLSPGYAVFRVLFHVSRIGSLIGGDGDVL 68
           KRSR +S    NG G   +  G  R    S  +     VFR L  V +IGS+IG  GD++
Sbjct: 17  KRSRPQSDYDDNG-GSKRRYRGDDR---DSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIV 76

Query: 69  SQIREETGVEIRVEETVHGSNEKIVVIAGPNQET 103
            Q+R +T  +IR+ E + G +E+++ I  P+ ET
Sbjct: 77  KQLRNDTRSKIRIGEAIPGCDERVITIYSPSDET 106

[Close]

BLAST of Csor.00g075660 vs. TAIR 10
Match: AT5G64390.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-07
Identity = 31/82 (37.80%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 44  GYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSNEKIV-VIAGPNQET 103
           G+A FR+L  +S +G++IG  G+V+ Q+++ TG +IRVEE   GS ++++ +IA  + ++
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 104 EV----NPEQNNKEDKKNSEVE 121
            V    N   N + +KK  EVE
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVE 126

[Close]

BLAST of Csor.00g075660 vs. TAIR 10
Match: AT5G64390.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-07
Identity = 31/82 (37.80%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 44  GYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSNEKIV-VIAGPNQET 103
           G+A FR+L  +S +G++IG  G+V+ Q+++ TG +IRVEE   GS ++++ +IA  + ++
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 104 EV----NPEQNNKEDKKNSEVE 121
            V    N   N + +KK  EVE
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVE 126

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BLAST of Csor.00g075660 vs. TAIR 10
Match: AT5G64390.3 (RNA-binding KH domain-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-07
Identity = 31/82 (37.80%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 44  GYAVFRVLFHVSRIGSLIGGDGDVLSQIREETGVEIRVEETVHGSNEKIV-VIAGPNQET 103
           G+A FR+L  +S +G++IG  G+V+ Q+++ TG +IRVEE   GS ++++ +IA  + ++
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 104 EV----NPEQNNKEDKKNSEVE 121
            V    N   N + +KK  EVE
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVE 126

The following BLAST results are available for this feature:

BLAST of Csor.00g075660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KDN0	1.0e-05	37.80	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
Q9SR13	2.6e-04	35.29	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
Q8W4B1	7.5e-04	32.84	RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Csor.00g075660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608107.1	1.18e-117	100.00	KH domain-containing protein HEN4, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031745.1	6.50e-108	98.82	KH domain-containing protein HEN4, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038896749.1	7.78e-75	78.03	KH domain-containing protein HEN4-like [Benincasa hispida]	[more]
XP_004136236.1	2.29e-73	76.30	KH domain-containing protein HEN4 [Cucumis sativus] >XP_011652608.1 KH domain-co...	[more]
XP_022159704.1	1.74e-72	77.01	KH domain-containing protein HEN4-like [Momordica charantia]	[more]

BLAST of Csor.00g075660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJT9	2.77e-73	76.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894490 PE=4 SV=1	[more]
A0A6J1E343	8.44e-73	77.01	KH domain-containing protein HEN4-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5A7T8U8	2.93e-72	75.14	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CRU9	4.57e-72	75.14	KH domain-containing protein At4g18375-like OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A6J1F912	9.14e-72	76.88	KH domain-containing protein HEN4-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of Csor.00g075660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15270.2	2.3e-08	37.23	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	2.3e-08	37.23	RNA-binding KH domain-containing protein	[more]
AT5G64390.2	7.4e-07	37.80	RNA-binding KH domain-containing protein	[more]
AT5G64390.1	7.4e-07	37.80	RNA-binding KH domain-containing protein	[more]
AT5G64390.3	7.4e-07	37.80	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 44..121 e-value: 6.7E-5 score: 32.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 48..101 e-value: 5.0E-9 score: 35.9
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 46..105 e-value: 2.3E-10 score: 42.0
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 41..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..149
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 1..172
None	No IPR available	PANTHER	PTHR10288:SF148	KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE	coord: 1..172
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 45..111 score: 11.92973

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g075660.m01	Csor.00g075660.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding