Csor.00g075330 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTATGGTTCGGCCCAGATAAATCACGAAAGTAGATAATGGGCCGGCTCGACTATAAATAGATGGTCCTGCGGCATTCTTCAATTTCCCGGGCTTTGGAATCGGAGGCGGGAGGCCTCTCGTAAACCATAACATCGAAGAGAAGCAGCGAAGACGAAGGAAAGAGGTTACCGCTTGAATACTCTTCTCCATTTGAATTCTCAAGTTCATTCTCCAGTCTCGAGTTCTCTGCTTTCATGGTGAATTTCTTCCTTTCTTTTTTTTTTTTTTTTCACGAACTCAGTATTGCATTTCTTAGTATTCTCACTGTACGCACGTTTGTTCTTGTTTTACTATTTCGTAGGAGTTACAGCAGGAGCGAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGATGAGCAGCGTCTCGCTGGCCTTTTCTTAGTCACTATAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGCGAAGTTTCTTGATCGGCTTCTCAGGACTGGTATGTTCCTTAACACTTTGGTATCCGCGGTAAACTTGCACATATATGTTCTCAAAATAGCGTTTAAAACTTCTAGGCATTGGTAAGGAATTATTAGTTGACCTGGAGAGGAGAATTGCGATGTGTATTTGTAGCTGTATGTTAGGATTTTGGTTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCCGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTCTTGGTTGCATTTCTACATCAGTCAGTTGATTATTGACGGTAACTAGAACGATGAGTTATCCTCCTTATTCCTTTGACTATTGATGTTCTGATGAGATAATGTGTTAGATTGATCACAAGGCACGACATCAGATTTGCAATATAATTATTTACTTCATTTGTCCTGAATTAACCACGAATTCACTTCTGCTCTGTGGATTTAGGTTCTTCCCATTAGGAAATAATCGATTTAATCGTGGACAAGATTTTCCAGAGAGAGATATACATTATGCTTTCTTTTCTGGTCTGAGCTCCTTGATCGATGTTTCTCTTATTGTTTATGCAAGGTCAGGATCTTCCGTTTTGGAGGAGCGTTTTGAATTTTTATATCTTGTATCAACTGCTTCCGTTGTTGGAGTCTCCATTCTATATAAATCTGGATTCTGAAATTAATGGTGCTAACAGTAAAGATTACGTGCGTAGTTTCTTGACTAATGCATCAATTGTAGGTTGATTTATCCAGTTGGACATTCTTTTTGGTTTTAATTATCTTTCACTAATTGCAGAATTTTCTGTCATGTTAGTTCTTGGTTTTTTCATAATTACAGATTGTTATTGTTTGGCTGATGTGTTATATGTTTCAGACATCACGTTAAAATGTCTTTCGTGTCTAGTGCCCTCCAATGTTTGGTCCAAACATATGCGTGATGGAATTTCAGCTATCCTTCACGCATTTTCTTCAGGCTCTTAGTTTGGCTGTGTCTATGGTATCTATTCTAGGAGAAGTTTAGCTGATAGGCGAAATTGAATTACCTGATGTTCGAGATCCTATTCCATCCGACAGGTATTCAGTGATTGCTACCAGTAATGATGCTTTATTAACTTCTCATGTATATTCTCAGATGTCTAATACTTGTCTTAGAGAAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCTATATGAAATATGACGCTTGA ATGGTTATGGAGTTACAGCAGGAGCGAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGATGAGCAGCGTCTCGCTGGCCTTTTCTTAGTCACTATAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGCGAAGTTTCTTGATCGGCTTCTCAGGACTGGTATGTTCCTTAACACTTTGGTATCCGCGGATTTTGGTTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCCGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTCTTGGTTGCATTTCTACATCAGTTCTTCCCATTAGGAAATAATCGATTTAATCGTGGACAAGATTTTCCAGAGAGAGATATACATTATGCTTTCTTTTCTGGTCTGAGCTCCTTGATCGATGTTTCTCTTATTGTTTATGCAAGATGTCTAATACTTGTCTTAGAGAAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCTATATGAAATATGACGCTTGA ATGGTTATGGAGTTACAGCAGGAGCGAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGATGAGCAGCGTCTCGCTGGCCTTTTCTTAGTCACTATAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGCGAAGTTTCTTGATCGGCTTCTCAGGACTGGTATGTTCCTTAACACTTTGGTATCCGCGGATTTTGGTTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCCGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTCTTGGTTGCATTTCTACATCAGTTCTTCCCATTAGGAAATAATCGATTTAATCGTGGACAAGATTTTCCAGAGAGAGATATACATTATGCTTTCTTTTCTGGTCTGAGCTCCTTGATCGATGTTTCTCTTATTGTTTATGCAAGATGTCTAATACTTGTCTTAGAGAAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCTATATGAAATATGACGCTTGA MVMELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLLRTGMFLNTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQFFPLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYARCLILVLEKSRAEIGMVLNELAYMKYDA Homology
BLAST of Csor.00g075330 vs. NCBI nr
Match: KAG6608140.1 (hypothetical protein SDJN03_01482, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 364 bits (935), Expect = 7.85e-127 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of Csor.00g075330 vs. NCBI nr
Match: KAG7031777.1 (hypothetical protein SDJN02_05818, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 311 bits (796), Expect = 8.91e-103 Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0
BLAST of Csor.00g075330 vs. NCBI nr
Match: XP_038899673.1 (neurochondrin isoform X2 [Benincasa hispida]) HSP 1 Score: 107 bits (267), Expect = 3.51e-23 Identity = 74/134 (55.22%), Postives = 81/134 (60.45%), Query Frame = 0
BLAST of Csor.00g075330 vs. NCBI nr
Match: XP_038899672.1 (neurochondrin isoform X1 [Benincasa hispida]) HSP 1 Score: 107 bits (267), Expect = 3.51e-23 Identity = 74/134 (55.22%), Postives = 81/134 (60.45%), Query Frame = 0
BLAST of Csor.00g075330 vs. NCBI nr
Match: XP_038899675.1 (neurochondrin isoform X3 [Benincasa hispida]) HSP 1 Score: 106 bits (264), Expect = 8.72e-23 Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 0
BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A6J1F631 (uncharacterized protein LOC111442684 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442684 PE=4 SV=1) HSP 1 Score: 104 bits (260), Expect = 1.45e-22 Identity = 65/101 (64.36%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A6J1FC19 (uncharacterized protein LOC111442684 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442684 PE=4 SV=1) HSP 1 Score: 104 bits (260), Expect = 1.46e-22 Identity = 65/101 (64.36%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A0A0L170 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652750 PE=4 SV=1) HSP 1 Score: 103 bits (257), Expect = 3.79e-22 Identity = 64/100 (64.00%), Postives = 70/100 (70.00%), Query Frame = 0
BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A1S3BUW9 (neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1) HSP 1 Score: 103 bits (256), Expect = 4.02e-22 Identity = 64/101 (63.37%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A6J1IMN8 (neurochondrin homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476614 PE=4 SV=1) HSP 1 Score: 103 bits (256), Expect = 5.02e-22 Identity = 64/101 (63.37%), Postives = 69/101 (68.32%), Query Frame = 0
BLAST of Csor.00g075330 vs. TAIR 10
Match: AT4G32050.1 (neurochondrin family protein ) HSP 1 Score: 73.2 bits (178), Expect = 2.6e-13 Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 0
HSP 2 Score: 40.4 bits (93), Expect = 1.8e-03 Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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