Csor.00g075330 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g075330
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionneurochondrin homolog isoform X1
LocationCsor_Chr01: 11816708 .. 11818463 (+)
RNA-Seq ExpressionCsor.00g075330
SyntenyCsor.00g075330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGGTTCGGCCCAGATAAATCACGAAAGTAGATAATGGGCCGGCTCGACTATAAATAGATGGTCCTGCGGCATTCTTCAATTTCCCGGGCTTTGGAATCGGAGGCGGGAGGCCTCTCGTAAACCATAACATCGAAGAGAAGCAGCGAAGACGAAGGAAAGAGGTTACCGCTTGAATACTCTTCTCCATTTGAATTCTCAAGTTCATTCTCCAGTCTCGAGTTCTCTGCTTTCATGGTGAATTTCTTCCTTTCTTTTTTTTTTTTTTTTCACGAACTCAGTATTGCATTTCTTAGTATTCTCACTGTACGCACGTTTGTTCTTGTTTTACTATTTCGTAGGAGTTACAGCAGGAGCGAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGATGAGCAGCGTCTCGCTGGCCTTTTCTTAGTCACTATAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGCGAAGTTTCTTGATCGGCTTCTCAGGACTGGTATGTTCCTTAACACTTTGGTATCCGCGGTAAACTTGCACATATATGTTCTCAAAATAGCGTTTAAAACTTCTAGGCATTGGTAAGGAATTATTAGTTGACCTGGAGAGGAGAATTGCGATGTGTATTTGTAGCTGTATGTTAGGATTTTGGTTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCCGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTCTTGGTTGCATTTCTACATCAGTCAGTTGATTATTGACGGTAACTAGAACGATGAGTTATCCTCCTTATTCCTTTGACTATTGATGTTCTGATGAGATAATGTGTTAGATTGATCACAAGGCACGACATCAGATTTGCAATATAATTATTTACTTCATTTGTCCTGAATTAACCACGAATTCACTTCTGCTCTGTGGATTTAGGTTCTTCCCATTAGGAAATAATCGATTTAATCGTGGACAAGATTTTCCAGAGAGAGATATACATTATGCTTTCTTTTCTGGTCTGAGCTCCTTGATCGATGTTTCTCTTATTGTTTATGCAAGGTCAGGATCTTCCGTTTTGGAGGAGCGTTTTGAATTTTTATATCTTGTATCAACTGCTTCCGTTGTTGGAGTCTCCATTCTATATAAATCTGGATTCTGAAATTAATGGTGCTAACAGTAAAGATTACGTGCGTAGTTTCTTGACTAATGCATCAATTGTAGGTTGATTTATCCAGTTGGACATTCTTTTTGGTTTTAATTATCTTTCACTAATTGCAGAATTTTCTGTCATGTTAGTTCTTGGTTTTTTCATAATTACAGATTGTTATTGTTTGGCTGATGTGTTATATGTTTCAGACATCACGTTAAAATGTCTTTCGTGTCTAGTGCCCTCCAATGTTTGGTCCAAACATATGCGTGATGGAATTTCAGCTATCCTTCACGCATTTTCTTCAGGCTCTTAGTTTGGCTGTGTCTATGGTATCTATTCTAGGAGAAGTTTAGCTGATAGGCGAAATTGAATTACCTGATGTTCGAGATCCTATTCCATCCGACAGGTATTCAGTGATTGCTACCAGTAATGATGCTTTATTAACTTCTCATGTATATTCTCAGATGTCTAATACTTGTCTTAGAGAAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCTATATGAAATATGACGCTTGA

mRNA sequence

ATGGTTATGGAGTTACAGCAGGAGCGAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGATGAGCAGCGTCTCGCTGGCCTTTTCTTAGTCACTATAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGCGAAGTTTCTTGATCGGCTTCTCAGGACTGGTATGTTCCTTAACACTTTGGTATCCGCGGATTTTGGTTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCCGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTCTTGGTTGCATTTCTACATCAGTTCTTCCCATTAGGAAATAATCGATTTAATCGTGGACAAGATTTTCCAGAGAGAGATATACATTATGCTTTCTTTTCTGGTCTGAGCTCCTTGATCGATGTTTCTCTTATTGTTTATGCAAGATGTCTAATACTTGTCTTAGAGAAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCTATATGAAATATGACGCTTGA

Coding sequence (CDS)

ATGGTTATGGAGTTACAGCAGGAGCGAACACCGTCGGAATCCATAGAAGATTCTTTGAAGCTCTTGAAGGATGAGCAGCGTCTCGCTGGCCTTTTCTTAGTCACTATAATTTGCGAGGTGGACGATCGTGCCTCGCTTACTAGAGTTTACTATGCTGTTGGAGCGAAGTTTCTTGATCGGCTTCTCAGGACTGGTATGTTCCTTAACACTTTGGTATCCGCGGATTTTGGTTTGGCTGCGTTTTTTCATGTTCCTGAGATTTCTGGAGATCGTCTCGGAGATTCCGCTGATACTAGAGGCCTAATCCAGCCAATGCGTCGGCTATCCGTATACTTTCTCTTGGTTGCATTTCTACATCAGTTCTTCCCATTAGGAAATAATCGATTTAATCGTGGACAAGATTTTCCAGAGAGAGATATACATTATGCTTTCTTTTCTGGTCTGAGCTCCTTGATCGATGTTTCTCTTATTGTTTATGCAAGATGTCTAATACTTGTCTTAGAGAAGTCAAGAGCTGAGATCGGTATGGTGCTGAATGAACTGGCCTATATGAAATATGACGCTTGA

Protein sequence

MVMELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLLRTGMFLNTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQFFPLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYARCLILVLEKSRAEIGMVLNELAYMKYDA
Homology
BLAST of Csor.00g075330 vs. NCBI nr
Match: KAG6608140.1 (hypothetical protein SDJN03_01482, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364 bits (935), Expect = 7.85e-127
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0

Query: 1   MVMELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDR 60
           MVMELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDR
Sbjct: 1   MVMELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDR 60

Query: 61  LLRTGMFLNTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQ 120
           LLRTGMFLNTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQ
Sbjct: 61  LLRTGMFLNTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQ 120

Query: 121 FFPLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYARCLILVLEKSRAEIGMVLNE 180
           FFPLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYARCLILVLEKSRAEIGMVLNE
Sbjct: 121 FFPLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYARCLILVLEKSRAEIGMVLNE 180

Query: 181 LAYMKYDA 188
           LAYMKYDA
Sbjct: 181 LAYMKYDA 188

BLAST of Csor.00g075330 vs. NCBI nr
Match: KAG7031777.1 (hypothetical protein SDJN02_05818, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311 bits (796), Expect = 8.91e-103
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLL 62
           MELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLL
Sbjct: 27  MELQQERTPSESIEDSLKLLKDEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLL 86

Query: 63  RTGMFLNTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQFF 122
           RTGMFL+TLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQFF
Sbjct: 87  RTGMFLSTLVSADFGLAAFFHVPEISGDRLGDSADTRGLIQPMRRLSVYFLLVAFLHQFF 146

Query: 123 PLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYARCLILVLEK 169
           PLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYAR    VLE+
Sbjct: 147 PLGNNRFNRGQDFPERDIHYAFFSGLSSLIDVSLIVYARSGSSVLEE 193

BLAST of Csor.00g075330 vs. NCBI nr
Match: XP_038899673.1 (neurochondrin isoform X2 [Benincasa hispida])

HSP 1 Score: 107 bits (267), Expect = 3.51e-23
Identity = 74/134 (55.22%), Postives = 81/134 (60.45%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLD 62
           MELQQE+TPS SIED LKLLK   DEQRLAGLFLVT IC+VDD ASL+RVY A+GAKFLD
Sbjct: 1   MELQQEQTPSGSIEDCLKLLKGEKDEQRLAGLFLVTKICKVDDLASLSRVYNAIGAKFLD 60

Query: 63  RLLRTGMFLNTLVSADFG------------LAAFFHVPEISGDRLGDSADTRGLIQPMRR 119
           RLLRTGM   T+                  LAAF HVPEI+      S     L     +
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

BLAST of Csor.00g075330 vs. NCBI nr
Match: XP_038899672.1 (neurochondrin isoform X1 [Benincasa hispida])

HSP 1 Score: 107 bits (267), Expect = 3.51e-23
Identity = 74/134 (55.22%), Postives = 81/134 (60.45%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLD 62
           MELQQE+TPS SIED LKLLK   DEQRLAGLFLVT IC+VDD ASL+RVY A+GAKFLD
Sbjct: 1   MELQQEQTPSGSIEDCLKLLKGEKDEQRLAGLFLVTKICKVDDLASLSRVYNAIGAKFLD 60

Query: 63  RLLRTGMFLNTLVSADFG------------LAAFFHVPEISGDRLGDSADTRGLIQPMRR 119
           RLLRTGM   T+                  LAAF HVPEI+      S     L     +
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIAASEEMVSKIPLILETLSNQ 120

BLAST of Csor.00g075330 vs. NCBI nr
Match: XP_038899675.1 (neurochondrin isoform X3 [Benincasa hispida])

HSP 1 Score: 106 bits (264), Expect = 8.72e-23
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLD 62
           MELQQE+TPS SIED LKLLK   DEQRLAGLFLVT IC+VDD ASL+RVY A+GAKFLD
Sbjct: 1   MELQQEQTPSGSIEDCLKLLKGEKDEQRLAGLFLVTKICKVDDLASLSRVYNAIGAKFLD 60

Query: 63  RLLRTGMFLNTLVSADFG------------LAAFFHVPEIS 88
           RLLRTGM   T+                  LAAF HVPEI+
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIA 101

BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A6J1F631 (uncharacterized protein LOC111442684 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442684 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 1.45e-22
Identity = 65/101 (64.36%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLD 62
           MELQQE+TPS SIED LKLLK   DEQRLAGLFLVT IC+VDD ASLTRVY AVGAKFLD
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVTKICKVDDIASLTRVYNAVGAKFLD 60

Query: 63  RLLRTGMFLNTLVSADFG------------LAAFFHVPEIS 88
           RLLRTGM   T+                  L AF HVP+I+
Sbjct: 61  RLLRTGMGKGTVSGPGEENRDAYLQLSVRILVAFCHVPDIA 101

BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A6J1FC19 (uncharacterized protein LOC111442684 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442684 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 1.46e-22
Identity = 65/101 (64.36%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLD 62
           MELQQE+TPS SIED LKLLK   DEQRLAGLFLVT IC+VDD ASLTRVY AVGAKFLD
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVTKICKVDDIASLTRVYNAVGAKFLD 60

Query: 63  RLLRTGMFLNTLVSADFG------------LAAFFHVPEIS 88
           RLLRTGM   T+                  L AF HVP+I+
Sbjct: 61  RLLRTGMGKGTVSGPGEENRDAYLQLSVRILVAFCHVPDIA 101

BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A0A0L170 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652750 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 3.79e-22
Identity = 64/100 (64.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query: 4   ELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDR 63
           ELQQE+TPS SIED LKLLK   DEQRLAGLFLVT IC+VDD ASL+RVY AVG+KFLDR
Sbjct: 42  ELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVTKICKVDDLASLSRVYNAVGSKFLDR 101

Query: 64  LLRTGMFLNTLVSADFG------------LAAFFHVPEIS 88
           LLRTGM   T+                  LAAF HVPEI+
Sbjct: 102 LLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIA 141

BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A1S3BUW9 (neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 4.02e-22
Identity = 64/101 (63.37%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLD 62
           MELQQE+TPS SIED LKLLK   DEQRLAGLFLV  IC+VDD ASL+RVY AVGAKFL+
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLAGLFLVAKICKVDDLASLSRVYNAVGAKFLE 60

Query: 63  RLLRTGMFLNTLVSADFG------------LAAFFHVPEIS 88
           RLLRTGM   T+                  LAAF HVPEI+
Sbjct: 61  RLLRTGMGKGTVSGPGEDNRDAYLQLSVRILAAFCHVPEIA 101

BLAST of Csor.00g075330 vs. ExPASy TrEMBL
Match: A0A6J1IMN8 (neurochondrin homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476614 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 5.02e-22
Identity = 64/101 (63.37%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 3   MELQQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLD 62
           MELQQE+TPS SIED LKLLK   DEQRL GLFLVT IC+VDD ASLTRVY AVGAKFLD
Sbjct: 1   MELQQEQTPSVSIEDCLKLLKGEKDEQRLVGLFLVTKICKVDDIASLTRVYNAVGAKFLD 60

Query: 63  RLLRTGMFLNTLVSADFG------------LAAFFHVPEIS 88
           RLLRTGM   T+                  L AF HVP+I+
Sbjct: 61  RLLRTGMGKGTVSGPGEENRDAYLQLSVRILVAFCHVPDIA 101

BLAST of Csor.00g075330 vs. TAIR 10
Match: AT4G32050.1 (neurochondrin family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-13
Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 0

Query: 6  QQERTPSESIEDSLKLLK---DEQRLAGLFLVTIICEVDDRASLTRVYYAVGAKFLDRLL 65
          Q+ER+P  S++D LKLLK   DEQRLAGL LVT  C+ DD  SL +VY AVG  FLDRL 
Sbjct: 6  QEERSP--SLDDCLKLLKGERDEQRLAGLLLVTKFCKNDDIVSLNKVYEAVGTHFLDRLF 65

Query: 66 RTG-----------MFLNTLVSADFGLAAFFHVPEIS 89
          RTG           ++L   ++    LAAF  VPEI+
Sbjct: 66 RTGSGSGDGVDNRDVYLQISITV---LAAFCRVPEIA 97


HSP 2 Score: 40.4 bits (93), Expect = 1.8e-03
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0

Query: 161 RCLILVLEKSRAEIGMVLNELAYMKYDA 189
           RCL+LVLE S  EI ++LN+LAY KY+A
Sbjct: 298 RCLLLVLESSHVEISVLLNDLAYKKYEA 325

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6608140.17.85e-127100.00hypothetical protein SDJN03_01482, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031777.18.91e-10396.41hypothetical protein SDJN02_05818, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038899673.13.51e-2355.22neurochondrin isoform X2 [Benincasa hispida][more]
XP_038899672.13.51e-2355.22neurochondrin isoform X1 [Benincasa hispida][more]
XP_038899675.18.72e-2364.36neurochondrin isoform X3 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1F6311.45e-2264.36uncharacterized protein LOC111442684 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FC191.46e-2264.36uncharacterized protein LOC111442684 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0L1703.79e-2264.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652750 PE=4 SV=1[more]
A0A1S3BUW94.02e-2263.37neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1[more]
A0A6J1IMN85.02e-2263.37neurochondrin homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476614 PE=... [more]
Match NameE-valueIdentityDescription
AT4G32050.12.6e-1350.52neurochondrin family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008709NeurochondrinPFAMPF05536Neurochondrincoord: 12..65
e-value: 4.0E-12
score: 45.3
IPR008709NeurochondrinPANTHERPTHR13109NEUROCHONDRINcoord: 6..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g075330.m01Csor.00g075330.m01mRNA