Csor.00g075080 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g075080
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 11979519 .. 11979857 (+)
RNA-Seq Expression	Csor.00g075080
Synteny	Csor.00g075080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCTCTATCCCTCAGCAGAAGCGACGCTTTGGCATCATCGAGTCCAGGCCAAACGTCTAGTATCGCCTCCAAGTAACTGTTCACCCAACCATTTCCCGCCATTACCGCAGCGCTCTAGATCTCTCGAACACACTGAAGAACAATGATCCACCAACGAGACGCTATATAAATGAAGTCGCAGTGGATCACGCTGATGCATTGCAGTGCAAAACACAAAGAGAAACAGAGATTCCGCGAAGGTTACGATGAATATGATTCTGGTTCTGATTCTGATTCTGATTTTGATTCAGGTCGTAACCACCACCGGAGCGCCACCGGAGCATATGTAAGTTGA

mRNA sequence

ATGTGTCCTCTATCCCTCAGCAGAAGCGACGCTTTGGCATCATCGAGTCCAGGCCAAACGTCTAGTATCGCCTCCAATGCAAAACACAAAGAGAAACAGAGATTCCGCGAAGGTTACGATGAATATGATTCTGGTTCTGATTCTGATTCTGATTTTGATTCAGGTCGTAACCACCACCGGAGCGCCACCGGAGCATATGTAAGTTGA

Coding sequence (CDS)

ATGTGTCCTCTATCCCTCAGCAGAAGCGACGCTTTGGCATCATCGAGTCCAGGCCAAACGTCTAGTATCGCCTCCAATGCAAAACACAAAGAGAAACAGAGATTCCGCGAAGGTTACGATGAATATGATTCTGGTTCTGATTCTGATTCTGATTTTGATTCAGGTCGTAACCACCACCGGAGCGCCACCGGAGCATATGTAAGTTGA

Protein sequence

MCPLSLSRSDALASSSPGQTSSIASNAKHKEKQRFREGYDEYDSGSDSDSDFDSGRNHHRSATGAYVS

Homology

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BLAST of Csor.00g075080 vs. NCBI nr
Match: KAG6608165.1 (hypothetical protein SDJN03_01507, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (321), Expect = 5.02e-37
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MCPLSLSRSDALASSSPGQTSSIASNAKHKEKQRFREGYDEYDSGSDSDSDFDSGRNHHR 60
          MCPLSLSRSDALASSSPGQTSSIASNAKHKEKQRFREGYDEYDSGSDSDSDFDSGRNHHR
Sbjct: 1  MCPLSLSRSDALASSSPGQTSSIASNAKHKEKQRFREGYDEYDSGSDSDSDFDSGRNHHR 60

Query: 61 SATGAYVS 68
          SATGAYVS
Sbjct: 61 SATGAYVS 68

The following BLAST results are available for this feature:

BLAST of Csor.00g075080 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g075080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608165.1	5.02e-37	100.00	hypothetical protein SDJN03_01507, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g075080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g075080 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g075080.m01	Csor.00g075080.m01	mRNA