Csor.00g074570 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g074570
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Omega-protein
Location	Csor_Chr01: 12284666 .. 12286190 (+)
RNA-Seq Expression	Csor.00g074570
Synteny	Csor.00g074570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACTCAACTTTCTTCTTGTCATCAGGTATATTGCAAAAACATTATATGGCGAGGATGAAGAAGTTGCTCCTCAAGATAACAACAGTATAGAAGAGCCAAAATTCCTTGGTCTTCATCCAGTTTCCAACGAAAAGGTTTCGACGTTTTGCTTGCTGCTGGAATCTATATAAGCATATGAAGCTGACTGCTCTACTAAGTTTTTGTTCTATATGATTTTGTTAATTACTAGAATGTTTTCTTTCAGATTCTTTTGAAAATGGTCCATATGGATTTTACGTGCAACTCGGTGAGGACAGGAAAGGATACTTACCCAAAAGAGCCTCTGCTTCCCAGGTATGAAGTTTTCTTTTCCGTTGACACAGATGTAAGACAGACTTTTTCTGGAATATCTGAAAACTTCCAATCTGATGTACTCATTGTGTTTGATCATGGTTTACTTCATGCAATTTTTATTGCTCAACGAAATTTCTCCTGTGGTTTATTTTTTCTTCCTTGTCTCTGAATGTATCAGAATCTAACCTTGCGTAATCTTTTCGCTCATATATCTTAGTTGTTAGGTTTAGACAACACACCACACATCAGAAATTGAGAGAGAAATTCCATTAGATATGTCGAAATAACTCAGCTTCTTGATCTTTAAATTTATTTTCAAAGATCCTTGTATTCATATAGCACCTTGAAACCTATGGCGAAGCGTACAAGCCTCGAACGATATTTTTCTACAAGTGTTACACTTCTTTTGCATTGCTTCCAGGTTCATAGGCGTATCACAAATAGGATACGGGACCTACTCCATGTATAAGCCTCCTTTTGCACCCATAAGGATTAGCTTCTGTATTTTATAATTTAGACGGAGAAAGTTCTTTGTTTTGCCACAACTTGCCTTTAAAATTCCATTTTGCAAAAGCTATTTTTCTTAATACATGTGAAAATTATTGGGATTGGTTGTCTGTATTAGGAATCACGACTCTCCACAATGGTATGATATTGTTCCACTTTGAACATAAGCTCTTATGGCTCTGCTTTAGACTTCCCAAAAGGCCTCATACCAATGGAAATAGTATTCCTTACTTATAAACCCTTAGCACAAAATGGATAAATGTTCTTTCAATTTTGTGTCAGTTACTGTTTGCCTTACTTGTGTTCTTCCATTTCTGATAAGAAGAAATATATATATATATATATATATATATATATATATATATTATATCAACTGTCAAACATGAATGATTGAAAAAGAAAATGATTGAATCTCTCTACGTGATAAATGTATCTGTAATTTTTTAAGTCATGAATCTTCATTTAAAACTGCACCTTACTCTATTACACTTGAGGTATACTCACATTCTCTGATGTATGATTATGACTTTTTTCCCCAATAAATTGGACTCAATTTTGTTGAGCACTTCTTGACAGGGACATCATCCAAAGGTTGGTCAACCAGTGATACTAAAGATTGCAAAAGCTGGATTCACCGTTAGACATCGGCACACGATGGCTTCCCTTCCTAAGGTCTTTTAA

mRNA sequence

ATGGTACTCAACTTTCTTCTTGTCATCAGGTATATTGCAAAAACATTATATGGCGAGGATGAAGAAGTTGCTCCTCAAGATAACAACAGTATAGAAGAGCCAAAATTCCTTGGTCTTCATCCAGTTTCCAACGAAAAGATTCTTTTGAAAATGGTCCATATGGATTTTACGTGCAACTCGGTGAGGACAGGAAAGGATACTTACCCAAAAGAGCCTCTGCTTCCCAGTCATGAATCTTCATTTAAAACTGCACCTTACTCTATTACACTTGAGGGACATCATCCAAAGGTTGGTCAACCAGTGATACTAAAGATTGCAAAAGCTGGATTCACCGTTAGACATCGGCACACGATGGCTTCCCTTCCTAAGGTCTTTTAA

Coding sequence (CDS)

ATGGTACTCAACTTTCTTCTTGTCATCAGGTATATTGCAAAAACATTATATGGCGAGGATGAAGAAGTTGCTCCTCAAGATAACAACAGTATAGAAGAGCCAAAATTCCTTGGTCTTCATCCAGTTTCCAACGAAAAGATTCTTTTGAAAATGGTCCATATGGATTTTACGTGCAACTCGGTGAGGACAGGAAAGGATACTTACCCAAAAGAGCCTCTGCTTCCCAGTCATGAATCTTCATTTAAAACTGCACCTTACTCTATTACACTTGAGGGACATCATCCAAAGGTTGGTCAACCAGTGATACTAAAGATTGCAAAAGCTGGATTCACCGTTAGACATCGGCACACGATGGCTTCCCTTCCTAAGGTCTTTTAA

Protein sequence

MVLNFLLVIRYIAKTLYGEDEEVAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDTYPKEPLLPSHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMASLPKVF

Homology

[Close]

BLAST of Csor.00g074570 vs. NCBI nr
Match: KAG6608215.1 (hypothetical protein SDJN03_01557, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257 bits (656), Expect = 2.40e-86
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MVLNFLLVIRYIAKTLYGEDEEVAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNS 60
           MVLNFLLVIRYIAKTLYGEDEEVAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNS
Sbjct: 1   MVLNFLLVIRYIAKTLYGEDEEVAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNS 60

Query: 61  VRTGKDTYPKEPLLPSHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMAS 120
           VRTGKDTYPKEPLLPSHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMAS
Sbjct: 61  VRTGKDTYPKEPLLPSHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMAS 120

Query: 121 LPKVF 125
           LPKVF
Sbjct: 121 LPKVF 125

[Close]

BLAST of Csor.00g074570 vs. NCBI nr
Match: XP_022144286.1 (uncharacterized protein LOC111013976 [Momordica charantia])

HSP 1 Score: 125 bits (315), Expect = 1.47e-30
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 10   RYIAKTLYGEDEEVAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDTYP 69
            +YIAKTLYGEDEEV PQ+NNS+EEPK LGLHPVSNEKILLK     F        K   P
Sbjct: 1000 KYIAKTLYGEDEEVTPQNNNSVEEPKLLGLHPVSNEKILLKSGPYGFYVQLGEDRKGYLP 1059

Query: 70   KEPLLP--------SHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMASL 123
            K   +         + E + +   Y ITL G+HPK GQPVI+KIAKAGF+VRHR T+A++
Sbjct: 1060 KRASVSQIKHVDSITLEDALELLRYPITL-GNHPKDGQPVIIKIAKAGFSVRHRRTIATI 1119

[Close]

BLAST of Csor.00g074570 vs. NCBI nr
Match: XP_038897953.1 (DNA topoisomerase 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 123 bits (308), Expect = 1.29e-29
Identity = 69/125 (55.20%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 10   RYIAKTLYGEDEEVAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDT-- 69
            +YIAKT+YGEDEEV PQ+NNS+EEPK LGLHPVSNEK++LK        + V+ G+DT  
Sbjct: 1000 KYIAKTIYGEDEEVTPQNNNSVEEPKLLGLHPVSNEKVILKSGPYG---SYVQLGEDTKG 1059

Query: 70   -YPKEPLLP--------SHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTM 123
              PK   +         + E + +   Y ITL G+HPK GQPVI+KIA+AGFTVRHR T+
Sbjct: 1060 YLPKRASVSQIKDVDSITLEDAVELLRYPITL-GNHPKDGQPVIIKIARAGFTVRHRRTI 1119

[Close]

BLAST of Csor.00g074570 vs. NCBI nr
Match: KAF8035086.1 (hypothetical protein BT93_C1191 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 117 bits (294), Expect = 9.93e-28
Identity = 67/124 (54.03%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 10   RYIAKTLYGEDEE--VAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDT 69
            +YIAKTLYGE+EE    PQ+NNSIEEPKFLGLHP SNEKILLK     +        K  
Sbjct: 990  KYIAKTLYGEEEEEDATPQNNNSIEEPKFLGLHPSSNEKILLKNGPYGYYVQLGEDRKGY 1049

Query: 70   YPKEPLLPSH--------ESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMA 123
             PK   +           E + +   Y +TL G+HPK GQPVILK++K GFTVRHR TMA
Sbjct: 1050 IPKRASISQTKEVDSINLEDALELLRYPVTL-GNHPKDGQPVILKLSKVGFTVRHRRTMA 1109

[Close]

BLAST of Csor.00g074570 vs. NCBI nr
Match: XP_030542417.1 (uncharacterized protein LOC115749652 isoform X2 [Rhodamnia argentea])

HSP 1 Score: 116 bits (290), Expect = 3.42e-27
Identity = 67/124 (54.03%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 10   RYIAKTLYGEDEE--VAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDT 69
            +YIAKTLYGE+EE    PQ NNSIEEPK LGLHPVSNEKILLK     F        K  
Sbjct: 920  KYIAKTLYGEEEEEDANPQTNNSIEEPKLLGLHPVSNEKILLKNGPYGFYVQLGEDRKGY 979

Query: 70   YPKEPLLPSH--------ESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMA 123
             PK   +           E + +   Y +TL G+HPK GQPVILK+++ GFTVRHR TMA
Sbjct: 980  IPKRASISQTKEVDSITIEDALELLRYPVTL-GNHPKDGQPVILKLSRVGFTVRHRRTMA 1039

[Close]

BLAST of Csor.00g074570 vs. ExPASy TrEMBL
Match: A0A6J1CSY4 (Omega-protein OS=Momordica charantia OX=3673 GN=LOC111013976 PE=3 SV=1)

HSP 1 Score: 125 bits (315), Expect = 7.10e-31
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 10   RYIAKTLYGEDEEVAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDTYP 69
            +YIAKTLYGEDEEV PQ+NNS+EEPK LGLHPVSNEKILLK     F        K   P
Sbjct: 1000 KYIAKTLYGEDEEVTPQNNNSVEEPKLLGLHPVSNEKILLKSGPYGFYVQLGEDRKGYLP 1059

Query: 70   KEPLLP--------SHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMASL 123
            K   +         + E + +   Y ITL G+HPK GQPVI+KIAKAGF+VRHR T+A++
Sbjct: 1060 KRASVSQIKHVDSITLEDALELLRYPITL-GNHPKDGQPVIIKIAKAGFSVRHRRTIATI 1119

[Close]

BLAST of Csor.00g074570 vs. ExPASy TrEMBL
Match: A0A059CRC1 (Omega-protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C02139 PE=3 SV=1)

HSP 1 Score: 114 bits (284), Expect = 1.07e-26
Identity = 66/125 (52.80%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 10   RYIAKTLYGEDEE---VAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKD 69
            +YIAKTLYGE+EE     PQ+NNSIEEPK LGLHP SNEKILLK     +        K 
Sbjct: 990  KYIAKTLYGEEEEEENATPQNNNSIEEPKLLGLHPGSNEKILLKNGPYGYYVQLGEDRKG 1049

Query: 70   TYPKEPLLPSH--------ESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTM 123
              PK   +           E +     Y +TL G+HPK GQPVILK++K GFTVRHR TM
Sbjct: 1050 YIPKRASISQTKEVDSITIEDALDLLRYPVTL-GNHPKDGQPVILKLSKVGFTVRHRRTM 1109

[Close]

BLAST of Csor.00g074570 vs. ExPASy TrEMBL
Match: A0A6J1F9K7 (Omega-protein OS=Cucurbita moschata OX=3662 GN=LOC111443338 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.46e-26
Identity = 66/123 (53.66%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 10   RYIAKTLYGEDEE-VAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDTY 69
            +YIAKTLYGEDEE V PQ+N S+EEPK LGLHPVS+EKILLK     F        K   
Sbjct: 971  KYIAKTLYGEDEEEVTPQNNQSVEEPKLLGLHPVSSEKILLKSGPYGFYVQLGEDRKGYM 1030

Query: 70   PKEPLLP--------SHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMAS 123
            PK   +         + E + +   Y ITL G+HPK GQ V++KI KAGFTVRHR T+AS
Sbjct: 1031 PKRTSVSQIKDVDSITLEDALELLRYPITL-GNHPKDGQRVLIKITKAGFTVRHRRTIAS 1090

[Close]

BLAST of Csor.00g074570 vs. ExPASy TrEMBL
Match: A0A6J1F8P8 (Omega-protein OS=Cucurbita moschata OX=3662 GN=LOC111443338 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.46e-26
Identity = 66/123 (53.66%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 10   RYIAKTLYGEDEE-VAPQDNNSIEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDTY 69
            +YIAKTLYGEDEE V PQ+N S+EEPK LGLHPVS+EKILLK     F        K   
Sbjct: 1001 KYIAKTLYGEDEEEVTPQNNQSVEEPKLLGLHPVSSEKILLKSGPYGFYVQLGEDRKGYM 1060

Query: 70   PKEPLLP--------SHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMAS 123
            PK   +         + E + +   Y ITL G+HPK GQ V++KI KAGFTVRHR T+AS
Sbjct: 1061 PKRTSVSQIKDVDSITLEDALELLRYPITL-GNHPKDGQRVLIKITKAGFTVRHRRTIAS 1120

[Close]

BLAST of Csor.00g074570 vs. ExPASy TrEMBL
Match: A0A2I0J503 (zf-C4_Topoisom domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_028801 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 1.52e-26
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 10  RYIAKTLYGEDEEVA-PQDNNS-IEEPKFLGLHPVSNEKILLKMVHMDFTCNSVRTGKDT 69
           +YIAKTLYGE+EE A PQ+NN+ IEEPK LGLHPVSNEKILLK     F        K+ 
Sbjct: 98  KYIAKTLYGEEEEDAVPQNNNTTIEEPKLLGLHPVSNEKILLKNGPYGFYVQLGEDRKNC 157

Query: 70  YPKEPLLP--------SHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMA 123
            PK   +         + E + +   Y ITL G HPK  QPV+LK+AK GFT+RHR T+A
Sbjct: 158 TPKRASIGQLKDVDSITVEDALELLRYPITL-GEHPKDKQPVVLKLAKVGFTIRHRRTIA 217

[Close]

BLAST of Csor.00g074570 vs. TAIR 10
Match: AT4G31210.1 (DNA topoisomerase, type IA, core )

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-21
Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 10   RYIAKTLYGEDE-EVAPQDNNSIEEPKFLGLHPVSNEKILLK--------MVHMDFTCNS 69
            ++IAKTLYGEDE E  P  NN +EEPK LGLHP ++EK++LK         +  D   ++
Sbjct: 1117 KFIAKTLYGEDEDEDDPPKNNCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHT 1176

Query: 70   VRTGKDTYPKEPLLPSHESSFKTAPYSITLEGHHPKVGQPVILKIAKAGFTVRHRHTMAS 124
             +     + K+    + ES+ +   Y +TL G HP+ GQPV+LK++K+GFT++HR  MA+
Sbjct: 1177 PKRANAAHIKDVNSITLESALELLRYPLTL-GTHPEDGQPVVLKLSKSGFTIKHRRNMAT 1236

The following BLAST results are available for this feature:

BLAST of Csor.00g074570 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g074570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608215.1	2.40e-86	100.00	hypothetical protein SDJN03_01557, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022144286.1	1.47e-30	56.56	uncharacterized protein LOC111013976 [Momordica charantia]	[more]
XP_038897953.1	1.29e-29	55.20	DNA topoisomerase 1 isoform X1 [Benincasa hispida]	[more]
KAF8035086.1	9.93e-28	54.03	hypothetical protein BT93_C1191 [Corymbia citriodora subsp. variegata]	[more]
XP_030542417.1	3.42e-27	54.03	uncharacterized protein LOC115749652 isoform X2 [Rhodamnia argentea]	[more]

BLAST of Csor.00g074570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSY4	7.10e-31	56.56	Omega-protein OS=Momordica charantia OX=3673 GN=LOC111013976 PE=3 SV=1	[more]
A0A059CRC1	1.07e-26	52.80	Omega-protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C02139 PE=3 SV=1	[more]
A0A6J1F9K7	1.46e-26	53.66	Omega-protein OS=Cucurbita moschata OX=3662 GN=LOC111443338 PE=3 SV=1	[more]
A0A6J1F8P8	1.46e-26	53.66	Omega-protein OS=Cucurbita moschata OX=3662 GN=LOC111443338 PE=3 SV=1	[more]
A0A2I0J503	1.52e-26	52.42	zf-C4_Topoisom domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_02...	[more]

BLAST of Csor.00g074570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31210.1	4.9e-21	43.09	DNA topoisomerase, type IA, core	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000380	DNA topoisomerase, type IA	PANTHER	PTHR42785	DNA TOPOISOMERASE, TYPE IA, CORE	coord: 10..123
None	No IPR available	PANTHER	PTHR42785:SF4	BNAA01G05990D PROTEIN	coord: 10..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g074570.m01	Csor.00g074570.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006265	DNA topological change
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity