Csor.00g073780 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g073780
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L13a
Location	Csor_Chr11: 6599951 .. 6601650 (+)
RNA-Seq Expression	Csor.00g073780
Synteny	Csor.00g073780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATGCACGAGATGTATGCCGCAAGGATCAAAACATGGTTGTCGGGAAGTTCCTGCGAATTCGTGCGCTTCCCTTTGCGCGGTCGGGTCCGTTGATGCCAGGCACCACCATGCTTTGAGGAGGCTGTCTTCTATTCATCGCCAAGGAGCTTCTCAATGGAACCGAGAAGAGTGGTTGTTGTTCACCGCACTGTGAGGAAACTTTGCATTTCTGGAGAATTGGCCTCGTCAGAAGATTTGAAGTACATGAAGCATTCTTTTGAGGAAGCCGTATGAAATACCAAGCACGATCTCATCCGCGTCCCATTCACTTCCCCGTGCTCCCTGCCCAAGGACCTTTTGGCGAACAATCCGTGGGTAATGGTTCTATTCTCGCGATTGTGTTTTCTATTATTGTTTGTAGTTAGTATAGAGATGACAAATGTTTGTTCGTTTGTTTTCGTTTGTTTTGTTTTGTTCCCCCTCCTTGGACGGCTTTTGTTAGTGTCCTCGAATCGTTCAGGACGGCTGCATCTTACATTATGTATATCTTCATTGTGGGTATTCGAGTAACCTGTTTTGTGTCATACCTGAAAGCATTTTGAAGAAAATTTGTGTTTCCGACCTTGTCTTCGTTATTCATTGAAAGGGCATGTATTATAATGAGCTGAATGAATTTATGAGGAGCAAACTAAACTTGTTGCGCAGGATATGTTTTCTGTGATTTTTGTAGCAATCTCTGTTTGGTTTACACCTTATTGTTGATCCCAATTCGCACTGGTTTACTATGTTTACAGTTGGCGTAACTCTTAGGCTTATGAGTGACATATTGACAAACTTCGAATTGATTTGGCATATTTCCATTTCCACAAAGAAACTAATGATTTTTCCAGCCATGATTTTAGCTTAGGCGGTTTGGGTTTCTGAATTTATCTTTTTGCCATTCCTATACGAACGCTATAGGTAGGTCTACAACTTATCTGTTTACCATTTTTTTGTGTTATTGTTAGTATGATCCCACACAAGACAAAGCGTGCGAGCTGCTGCTGCTCTTGCTCGTTTGAAGGCATATGAAGGCGTTCCACCTCCATATGACAAATGGAAAAGGATGGTCATCCCCGACGCTCTCAAGTGAGTTTGAGAATCAGGATCTTATCAGAAACAAAGACCATTATATACAAATTATGGACTAGAATTAAAATTTGAGCTACGTAATTAATCTGTGTTGTTGCAAAAGTCATAAACAAAGCACCATACCGTTATGTTCTAGTGTTTTCTGTATTTATGTTTTCTCCATATATTTTTTGATACTTGGTAGGGTTTTGAGGCTTCATAGCCTGGACACAAATACTGCTTGTTGGGCAGACTCTCACTCCTGAAGTGGGATGGCAACCACTATGACACTAATCAAGGTACAAACGCATTACGATAATGATTATTGAATTGTTGGCTTTTTCTGTTCATAATTTCTTTATTCCAAGTCTATCGAATCATATCATTTTGCCATATGTTTTTTACATTGTGTTTTGTGAGATCATTTCTCTTTATTATGTATTCTGATCTCTGGGTTTTTGTTGTTGTATCACAGGACTTGAAAGGAAGAGGAAGGAGAGGGCTCAGAGCCGTGTACGAGGAAGAAGAAAGCATTTGAAACATAGGTTGAGGGTCAAAAGCCGAGAAGGTTGCGGACAGAGAAGCTCGGTCCCCAGTTGCAAGTAA

mRNA sequence

ATGAGATGCACGAGATGTATGCCGCAAGGATCAAAACATGGTTGTCGGGAAGTTCCTGCGAATTCGTGCGCTTCCCTTTGCGCGGTCGGGTCCGTTGATGCCAGGCACCACCATGCTTTGAGGAGGCTGTCTTCTATTCATCGCCAAGGAGCTTCTCAATGGAACCGAGAAGAGTGGTTGTTGTTCACCGCACTACAAAGCGTGCGAGCTGCTGCTGCTCTTGCTCGTTTGAAGGCATATGAAGGCGTTCCACCTCCATATGACAAATGGAAAAGGATGGTCATCCCCGACGCTCTCAAACTCTCACTCCTGAAGTGGGATGGCAACCACTATGACACTAATCAAGGACTTGAAAGGAAGAGGAAGGAGAGGGCTCAGAGCCGTGTACGAGGAAGAAGAAAGCATTTGAAACATAGGTTGAGGGTCAAAAGCCGAGAAGGTTGCGGACAGAGAAGCTCGGTCCCCAGTTGCAAGTAA

Coding sequence (CDS)

ATGAGATGCACGAGATGTATGCCGCAAGGATCAAAACATGGTTGTCGGGAAGTTCCTGCGAATTCGTGCGCTTCCCTTTGCGCGGTCGGGTCCGTTGATGCCAGGCACCACCATGCTTTGAGGAGGCTGTCTTCTATTCATCGCCAAGGAGCTTCTCAATGGAACCGAGAAGAGTGGTTGTTGTTCACCGCACTACAAAGCGTGCGAGCTGCTGCTGCTCTTGCTCGTTTGAAGGCATATGAAGGCGTTCCACCTCCATATGACAAATGGAAAAGGATGGTCATCCCCGACGCTCTCAAACTCTCACTCCTGAAGTGGGATGGCAACCACTATGACACTAATCAAGGACTTGAAAGGAAGAGGAAGGAGAGGGCTCAGAGCCGTGTACGAGGAAGAAGAAAGCATTTGAAACATAGGTTGAGGGTCAAAAGCCGAGAAGGTTGCGGACAGAGAAGCTCGGTCCCCAGTTGCAAGTAA

Protein sequence

MRCTRCMPQGSKHGCREVPANSCASLCAVGSVDARHHHALRRLSSIHRQGASQWNREEWLLFTALQSVRAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLKWDGNHYDTNQGLERKRKERAQSRVRGRRKHLKHRLRVKSREGCGQRSSVPSCK

Homology

[Close]

BLAST of Csor.00g073780 vs. ExPASy Swiss-Prot
Match: Q9SVR0 (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLK +EG+PPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSREGCGQR 152
           T + LE KRKER+Q  V   RK   ++LR K+ +   +R
Sbjct: 159 TIKELETKRKERSQ--VMYERKKQLNKLRTKAEKVAEER 193

[Close]

BLAST of Csor.00g073780 vs. ExPASy Swiss-Prot
Match: Q9LRX8 (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13AB PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.8e-12
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLK +EGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE KRKER+Q+ +  R+K L  +LR K+ +
Sbjct: 159 TIKELEVKRKERSQA-LYERKKQLT-KLRAKAEK 188

[Close]

BLAST of Csor.00g073780 vs. ExPASy Swiss-Prot
Match: Q9FKC0 (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.8e-12
Identity = 50/94 (53.19%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLK YEGVP PYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE KRKERA   V   RK   ++LRVK+ +
Sbjct: 159 TIKELETKRKERA--HVVYERKKQLNKLRVKAEK 188

[Close]

BLAST of Csor.00g073780 vs. ExPASy Swiss-Prot
Match: Q9SFU1 (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-11
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R A ALARLK +EGVP PYDK KRMV+PDALK+  L+                W  NHYD
Sbjct: 99  RGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE KRKERAQ+ V  R+K L  +LR K+ +
Sbjct: 159 TIKELENKRKERAQA-VYERKKQLS-KLRAKAEK 188

[Close]

BLAST of Csor.00g073780 vs. ExPASy Swiss-Prot
Match: O49885 (60S ribosomal protein L13a OS=Lupinus luteus OX=3873 GN=RPL13A PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R   ALARLK YEG+PPP+DK KR+V+PDALK+  L+                W  N+YD
Sbjct: 98  RGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGW--NYYD 157

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE+KRKER+Q  V   RK   ++LRVK+ +
Sbjct: 158 TIKELEKKRKERSQ--VVYERKKQLNKLRVKAEQ 187

[Close]

BLAST of Csor.00g073780 vs. NCBI nr
Match: KAG6588455.1 (60S ribosomal protein L13a-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323 bits (828), Expect = 1.67e-111
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MRCTRCMPQGSKHGCREVPANSCASLCAVGSVDARHHHALRRLSSIHRQGASQWNREEWL 60
           MRCTRCMPQGSKHGCREVPANSCASLCAVGSVDARHHHALRRLSSIHRQGASQWNREEWL
Sbjct: 1   MRCTRCMPQGSKHGCREVPANSCASLCAVGSVDARHHHALRRLSSIHRQGASQWNREEWL 60

Query: 61  LFTALQSVRAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLKWDGNHYDTNQGLERK 120
           LFTALQSVRAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLKWDGNHYDTNQGLERK
Sbjct: 61  LFTALQSVRAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLKWDGNHYDTNQGLERK 120

Query: 121 RKERAQSRVRGRRKHLKHRLRVKSREGCGQRSSVPSCK 158
           RKERAQSRVRGRRKHLKHRLRVKSREGCGQRSSVPSCK
Sbjct: 121 RKERAQSRVRGRRKHLKHRLRVKSREGCGQRSSVPSCK 158

[Close]

BLAST of Csor.00g073780 vs. NCBI nr
Match: TYK18889.1 (60S ribosomal protein L13a-4 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 3.43e-16
Identity = 51/92 (55.43%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 8   RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 67

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKER+Q+     RK   ++LR+K+
Sbjct: 68  TIKELERKRKERSQAAYE--RKKQLNKLRIKA 95

[Close]

BLAST of Csor.00g073780 vs. NCBI nr
Match: XP_038878195.1 (60S ribosomal protein L13a-4-like [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 5.16e-16
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCFLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKERAQ+   G++K L  +LRVK+
Sbjct: 159 TIKELERKRKERAQAAY-GKKKQLT-KLRVKA 186

[Close]

BLAST of Csor.00g073780 vs. NCBI nr
Match: XP_023521847.1 (60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 7.24e-16
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKERAQ+ V  ++K L ++LRVK+
Sbjct: 159 TIKELERKRKERAQA-VYEKKKQL-NKLRVKA 186

[Close]

BLAST of Csor.00g073780 vs. NCBI nr
Match: XP_022936364.1 (60S ribosomal protein L13a-4-like [Cucurbita moschata] >XP_022974876.1 60S ribosomal protein L13a-4-like isoform X1 [Cucurbita maxima] >XP_022974877.1 60S ribosomal protein L13a-4-like isoform X2 [Cucurbita maxima] >XP_022974992.1 60S ribosomal protein L13a-4-like [Cucurbita maxima] >XP_022975471.1 60S ribosomal protein L13a-4-like [Cucurbita maxima] >XP_023521593.1 60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo] >XP_023539498.1 60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo] >KAG7028760.1 60S ribosomal protein L13a-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 7.24e-16
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKERAQ+ V  ++K L ++LRVK+
Sbjct: 159 TIKELERKRKERAQA-VYEKKKQL-NKLRVKA 186

[Close]

BLAST of Csor.00g073780 vs. ExPASy TrEMBL
Match: A0A5D3D5Q4 (60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00990 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.66e-16
Identity = 51/92 (55.43%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 8   RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 67

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKER+Q+     RK   ++LR+K+
Sbjct: 68  TIKELERKRKERSQAAYE--RKKQLNKLRIKA 95

[Close]

BLAST of Csor.00g073780 vs. ExPASy TrEMBL
Match: A0A6J1ICM6 (60S ribosomal protein L13a-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473648 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.51e-16
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKERAQ+ V  ++K L ++LRVK+
Sbjct: 159 TIKELERKRKERAQA-VYEKKKQL-NKLRVKA 186

[Close]

BLAST of Csor.00g073780 vs. ExPASy TrEMBL
Match: A0A6J1F834 (60S ribosomal protein L13a-4-like OS=Cucurbita moschata OX=3662 GN=LOC111443004 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.51e-16
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKERAQ+ V  ++K L ++LRVK+
Sbjct: 159 TIKELERKRKERAQA-VYEKKKQL-NKLRVKA 186

[Close]

BLAST of Csor.00g073780 vs. ExPASy TrEMBL
Match: A0A059B1E3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02787 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.92e-16
Identity = 55/92 (59.78%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKAYEGVPPPYDKTKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKS 144
           T + LERKRKERAQ  V  R+K L ++LRVK+
Sbjct: 159 TIKELERKRKERAQL-VYERKKQL-NKLRVKA 186

[Close]

BLAST of Csor.00g073780 vs. ExPASy TrEMBL
Match: A0A6J1IZ77 (60S ribosomal protein L13a-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479788 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.68e-16
Identity = 47/75 (62.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 127
           R AAALARLKAYEGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

[Close]

BLAST of Csor.00g073780 vs. TAIR 10
Match: AT4G13170.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLK +EG+PPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSREGCGQR 152
           T + LE KRKER+Q  V   RK   ++LR K+ +   +R
Sbjct: 159 TIKELETKRKERSQ--VMYERKKQLNKLRTKAEKVAEER 193

[Close]

BLAST of Csor.00g073780 vs. TAIR 10
Match: AT3G24830.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-13
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLK +EGVPPPYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE KRKER+Q+ +  R+K L  +LR K+ +
Sbjct: 159 TIKELEVKRKERSQA-LYERKKQLT-KLRAKAEK 188

[Close]

BLAST of Csor.00g073780 vs. TAIR 10
Match: AT5G48760.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-13
Identity = 50/94 (53.19%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLK YEGVP PYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE KRKERA   V   RK   ++LRVK+ +
Sbjct: 159 TIKELETKRKERA--HVVYERKKQLNKLRVKAEK 188

[Close]

BLAST of Csor.00g073780 vs. TAIR 10
Match: AT5G48760.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-13
Identity = 50/94 (53.19%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R AAALARLK YEGVP PYDK KRMVIPDALK+  L+                W  NHYD
Sbjct: 99  RGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE KRKERA   V   RK   ++LRVK+ +
Sbjct: 159 TIKELETKRKERA--HVVYERKKQLNKLRVKAEK 188

[Close]

BLAST of Csor.00g073780 vs. TAIR 10
Match: AT3G07110.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 69  RAAAALARLKAYEGVPPPYDKWKRMVIPDALKLSLLK----------------WDGNHYD 128
           R A ALARLK +EGVP PYDK KRMV+PDALK+  L+                W  NHYD
Sbjct: 99  RGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGW--NHYD 158

Query: 129 TNQGLERKRKERAQSRVRGRRKHLKHRLRVKSRE 147
           T + LE KRKERAQ+ V  R+K L  +LR K+ +
Sbjct: 159 TIKELENKRKERAQA-VYERKKQLS-KLRAKAEK 188

The following BLAST results are available for this feature:

BLAST of Csor.00g073780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVR0	2.3e-12	49.49	60S ribosomal protein L13a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13AC PE=2 SV=...	[more]
Q9LRX8	8.8e-12	52.13	60S ribosomal protein L13a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13AB PE=2 SV=...	[more]
Q9FKC0	8.8e-12	53.19	60S ribosomal protein L13a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=...	[more]
Q9SFU1	3.3e-11	51.06	60S ribosomal protein L13a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13AA PE=2 SV=...	[more]
O49885	1.3e-10	46.81	60S ribosomal protein L13a OS=Lupinus luteus OX=3873 GN=RPL13A PE=2 SV=1	[more]

BLAST of Csor.00g073780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588455.1	1.67e-111	100.00	60S ribosomal protein L13a-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
TYK18889.1	3.43e-16	55.43	60S ribosomal protein L13a-4 [Cucumis melo var. makuwa]	[more]
XP_038878195.1	5.16e-16	58.70	60S ribosomal protein L13a-4-like [Benincasa hispida]	[more]
XP_023521847.1	7.24e-16	58.70	60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936364.1	7.24e-16	58.70	60S ribosomal protein L13a-4-like [Cucurbita moschata] >XP_022974876.1 60S ribos...	[more]

BLAST of Csor.00g073780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5Q4	1.66e-16	55.43	60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1ICM6	3.51e-16	58.70	60S ribosomal protein L13a-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473648 PE...	[more]
A0A6J1F834	3.51e-16	58.70	60S ribosomal protein L13a-4-like OS=Cucurbita moschata OX=3662 GN=LOC111443004 ...	[more]
A0A059B1E3	4.92e-16	59.78	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02787 PE=3 SV...	[more]
A0A6J1IZ77	9.68e-16	62.67	60S ribosomal protein L13a-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479788 PE...	[more]

BLAST of Csor.00g073780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13170.1	1.6e-13	49.49	Ribosomal protein L13 family protein	[more]
AT3G24830.1	6.2e-13	52.13	Ribosomal protein L13 family protein	[more]
AT5G48760.1	6.2e-13	53.19	Ribosomal protein L13 family protein	[more]
AT5G48760.2	6.2e-13	53.19	Ribosomal protein L13 family protein	[more]
AT3G07110.1	2.4e-12	51.06	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 64..116 e-value: 3.7E-7 score: 32.1
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 66..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..158
None	No IPR available	PANTHER	PTHR11545:SF29	60S RIBOSOMAL PROTEIN L13A-4-LIKE	coord: 67..146
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 67..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g073780.m01	Csor.00g073780.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome