Csor.00g072660 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g072660
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRoot meristem growth factor 9-like protein
LocationCsor_Chr02: 3547047 .. 3547470 (-)
RNA-Seq ExpressionCsor.00g072660
SyntenyCsor.00g072660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCATGCAAACGCCTCGTCCTCGTCCTCCTCGTCCTCCTTGTCCTTCTACGTTGCTTCTCGAACACAGCTATAGGTATATTTCTTTATCTAATTAATTCATTACAATAAATTCAAAGGTTCGTTATTCATTAAAACAAATCAAGGAGCATTCTTTTTTAACACTAAAAATGTCACCATATTGAATTCTTAAGTACAAAGTTCGAATCGGGTCGTTTCATTTTTCAATCGAATCGTTGATTTGTTGTTGGCAGAAGCAAGAAGTTTGGGAGTGGGAGTGCCTCAGATTAAGAAGGATGATCATAGTTTGAAAGTAGATGGTGATCTTAATGTTGATGATGAAGAACATTTTATGAGCACTGTTGATTTGGTGGCTATGGATTATACTCAGGCTTCCAAGAAGCCTCCAATCCACAACTGA

mRNA sequence

ATGGCTCCATGCAAACGCCTCGTCCTCGTCCTCCTCGTCCTCCTTGTCCTTCTACGTTGCTTCTCGAACACAGCTATAGAAGCAAGAAGTTTGGGAGTGGGAGTGCCTCAGATTAAGAAGGATGATCATAGTTTGAAAGTAGATGGTGATCTTAATGTTGATGATGAAGAACATTTTATGAGCACTGTTGATTTGGTGGCTATGGATTATACTCAGGCTTCCAAGAAGCCTCCAATCCACAACTGA

Coding sequence (CDS)

ATGGCTCCATGCAAACGCCTCGTCCTCGTCCTCCTCGTCCTCCTTGTCCTTCTACGTTGCTTCTCGAACACAGCTATAGAAGCAAGAAGTTTGGGAGTGGGAGTGCCTCAGATTAAGAAGGATGATCATAGTTTGAAAGTAGATGGTGATCTTAATGTTGATGATGAAGAACATTTTATGAGCACTGTTGATTTGGTGGCTATGGATTATACTCAGGCTTCCAAGAAGCCTCCAATCCACAACTGA

Protein sequence

MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFMSTVDLVAMDYTQASKKPPIHN
Homology
BLAST of Csor.00g072660 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (391), Expect = 2.60e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM 60
          MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM 60

Query: 61 STVDLVAMDYTQASKKPPIHN 81
          STVDLVAMDYTQASKKPPIHN
Sbjct: 61 STVDLVAMDYTQASKKPPIHN 81

BLAST of Csor.00g072660 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 9.04e-20
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM 60
          MA  KR   VL+++LVLL  FSN  I  RSLGV  PQIKKDDH LK + DL V +EEHF 
Sbjct: 1  MAMNKR---VLVLVLVLLCSFSNKVIATRSLGV--PQIKKDDHKLKGNDDLAVHEEEHFS 60

Query: 61 STVDLVAMDYTQASKKPPIHN 81
          ST DL AMDYT ASKKPPIHN
Sbjct: 61 STDDLGAMDYTPASKKPPIHN 76

BLAST of Csor.00g072660 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 7.21e-17
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVP--QIKKDDHSLKVDGDLNV----- 60
          M PCKR++++ L++L+LL CFSNTAI ARS+GV     +I + +  + ++ D+N      
Sbjct: 3  MLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHNNN 62

Query: 61 DDEEHFMSTVDLVAMDYTQASKKPPIHN 81
          D+E +F ST DL AMDYT ASKKPPIHN
Sbjct: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Csor.00g072660 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 9.18e-15
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKV---DGDL----NV 60
          M PCKR++ + +++LVLL CFSN AI ARS  VGV ++K +  + KV   + D     N 
Sbjct: 3  MLPCKRILTLFVLILVLLCCFSNPAIAARS--VGVAEMKNESQNEKVINMNDDAYKVHNN 62

Query: 61 DDEEHFMSTVDLVAMDYTQASKKPPIHN 81
          D+E +F ST DL AMDYT ASKKPPIHN
Sbjct: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Csor.00g072660 vs. NCBI nr
Match: KAA8546932.1 (hypothetical protein F0562_003361 [Nyssa sinensis])

HSP 1 Score: 47.4 bits (111), Expect = 9.32e-05
Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM 60
          M  C+RLVLV  +LL    CF      ARSL   +   +K  H + +  +  V D     
Sbjct: 3  MVACRRLVLVAFLLL----CFIFITARARSLRTDINGAEKG-HDMFIPKEDGVPDS---- 62

Query: 61 STVDLVAMDYTQASKKPPIHN 81
          +T +LVAMDYT A+KKPPIHN
Sbjct: 63 TTEELVAMDYTPATKKPPIHN 74

BLAST of Csor.00g072660 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.49e-17
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVP--QIKKDDHSLKVDGDLNV----- 60
          M PCKR++++ L++L+LL CFSNTAI ARS+GV     +I + +  + ++ D+N      
Sbjct: 3  MLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHNNN 62

Query: 61 DDEEHFMSTVDLVAMDYTQASKKPPIHN 81
          D+E +F ST DL AMDYT ASKKPPIHN
Sbjct: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Csor.00g072660 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.44e-15
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKV---DGDL----NV 60
          M PCKR++ + +++LVLL CFSN AI ARS  VGV ++K +  + KV   + D     N 
Sbjct: 3  MLPCKRILTLFVLILVLLCCFSNPAIAARS--VGVAEMKNESQNEKVINMNDDAYKVHNN 62

Query: 61 DDEEHFMSTVDLVAMDYTQASKKPPIHN 81
          D+E +F ST DL AMDYT ASKKPPIHN
Sbjct: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Csor.00g072660 vs. ExPASy TrEMBL
Match: A0A5J5BZ75 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_003361 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.51e-05
Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM 60
          M  C+RLVLV  +LL    CF      ARSL   +   +K  H + +  +  V D     
Sbjct: 3  MVACRRLVLVAFLLL----CFIFITARARSLRTDINGAEKG-HDMFIPKEDGVPDS---- 62

Query: 61 STVDLVAMDYTQASKKPPIHN 81
          +T +LVAMDYT A+KKPPIHN
Sbjct: 63 TTEELVAMDYTPATKKPPIHN 74

BLAST of Csor.00g072660 vs. ExPASy TrEMBL
Match: A0A2N9HPW7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42164 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 6.83e-05
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM 60
          MA CKR++LV  VLL    CF     EARSL       +    + K   DL   ++E  +
Sbjct: 1  MAICKRVLLVTFVLL----CFIIITAEARSLRGMTTINEATSEAPKGSDDLFTPNQESVV 60

Query: 61 STVDLVAMDYTQASKKPPIHN 81
           T +LV+MDYT   K PPIHN
Sbjct: 61 DTDELVSMDYTPTKKNPPIHN 77

BLAST of Csor.00g072660 vs. ExPASy TrEMBL
Match: A0A498I047 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_039433 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.88e-05
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 0

Query: 3  PCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLN-------VDD 62
          PCK LV+V L LL    CF +   + RSL +GV      D   K   DL+        DD
Sbjct: 5  PCKNLVVVALFLL----CFISITAQGRSLELGVVSKGAADAHQKKSHDLHDTTFKQKQDD 64

Query: 63 EEHFM---STVDLVAMDYTQASKKPPIHN 81
          ++  +    + DL+AMDYT A KKPPIHN
Sbjct: 65 DQGVVLPDESNDLLAMDYTPARKKPPIHN 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605281.12.60e-47100.00hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571377.19.04e-2066.67hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0045905.17.21e-1751.14Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684... [more]
KGN62102.19.18e-1553.41hypothetical protein Csa_006036 [Cucumis sativus][more]
KAA8546932.19.32e-0543.21hypothetical protein F0562_003361 [Nyssa sinensis][more]
Match NameE-valueIdentityDescription
A0A5A7TWX63.49e-1751.14Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0LMV64.44e-1553.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1[more]
A0A5J5BZ754.51e-0543.21Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_003361 PE=4 SV=1[more]
A0A2N9HPW76.83e-0541.98Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42164 PE=4 SV=1[more]
A0A498I0478.88e-0541.57Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_039433 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33743:SF16ROOT MERISTEM GROWTH FACTOR 9coord: 1..81
IPR039337Protein GOLVEN 2PANTHERPTHR33743FAMILY NOT NAMEDcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g072660.m01Csor.00g072660.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity